Tolypothrix tenuis PCC 7101 plasmid plasmid3 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Tolypothrichaceae; Tolypothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan
REFSEQ INFORMATION: The reference sequence was derived from\nAP018251.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 55x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 13:20:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,460\nCDS (total) :: 7,369\nGenes (coding) :: 7,118\nCDS (coding) :: 7,118\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 251\nPseudo Genes (ambiguous residues) :: 7 of 251\nPseudo Genes (frameshifted) :: 42 of 251\nPseudo Genes (incomplete) :: 186 of 251\nPseudo Genes (internal stop) :: 48 of 251\nPseudo Genes (multiple problems) :: 30 of 251\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_010993952.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009629945.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876069.1
COORDINATES: protein motif:HMM:PF01420.17
COORDINATES: similar to AA sequence:RefSeq:WP_017786093.1
COORDINATES: similar to AA sequence:RefSeq:WP_017747074.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016873556.1
COORDINATES: similar to AA sequence:RefSeq:WP_016866385.1
COORDINATES: similar to AA sequence:RefSeq:WP_015183508.1
COORDINATES: similar to AA sequence:RefSeq:WP_005987898.1
COORDINATES: similar to AA sequence:RefSeq:WP_017287361.1
type I restriction-modification system endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_015954472.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006098790.1
COORDINATES: protein motif:HMM:PF03235.12
COORDINATES: protein motif:HMM:PF00072.22
COORDINATES: protein motif:HMM:PF02518.24
COORDINATES: similar to AA sequence:RefSeq:WP_006622250.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017307401.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948799.1
COORDINATES: similar to AA sequence:RefSeq:WP_010997645.1
formylglycine-generating enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006194993.1
SAV_2336 N-terminal domain-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_017748255.1
COORDINATES: similar to AA sequence:RefSeq:WP_017741351.1
trypsin-like peptidase domain-containing protein
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016879869.1
COORDINATES: similar to AA sequence:RefSeq:WP_016879868.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876053.1
COORDINATES: similar to AA sequence:RefSeq:WP_016876052.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217746.1
COORDINATES: similar to AA sequence:RefSeq:WP_015201135.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016879864.1
COORDINATES: protein motif:HMM:PF13481.4
COORDINATES: similar to AA sequence:RefSeq:WP_017308292.1
COORDINATES: similar to AA sequence:RefSeq:WP_007307247.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020261651.1
COORDINATES: similar to AA sequence:RefSeq:WP_015210958.1