Tolypothrix tenuis PCC 7101 plasmid plasmid1 DNA, complete genome.
Bacteria; Cyanobacteriota; Cyanophyceae; Nostocales; Tolypothrichaceae; Tolypothrix.
Genome sequencing of cyanobaciteial culture collection at National Institute for Environmental Studies (NIES)
Submitted (23-JUN-2017) Contact:Yuu Hirose Toyohashi University of Technology, Department of Environmental and Life Sciences; Hibarigaoka-1-1 Tenpakucho, Toyohashi, Aichi 441-8122, Japan
REFSEQ INFORMATION: The reference sequence was derived from\nAP018249.\nNBRP Genome Information Upgrading Program.: Genome sequencing of\ncyanobaciteial culture collection at National Institute for\nEnvironmental Studies (NIES).\n\nAnnotated using prokka 1.11 from http://www.vicbioinformatics.com.\nAnnotated at D-FAST https://dfast.nig.ac.jp\n\nAnnotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (released 2013). Information about the Pipeline can be\nfound here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: GS De Novo Assembler v. 2.9\nGenome Coverage :: 55x\nSequencing Technology :: Ilumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Date :: 09/28/2017 13:20:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS+\nAnnotation Software revision :: 4.2\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 7,460\nCDS (total) :: 7,369\nGenes (coding) :: 7,118\nCDS (coding) :: 7,118\nGenes (RNA) :: 91\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 72\nncRNAs :: 4\nPseudo Genes (total) :: 251\nPseudo Genes (ambiguous residues) :: 7 of 251\nPseudo Genes (frameshifted) :: 42 of 251\nPseudo Genes (incomplete) :: 186 of 251\nPseudo Genes (internal stop) :: 48 of 251\nPseudo Genes (multiple problems) :: 30 of 251\nCRISPR Arrays :: 18\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016863657.1
incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016876776.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013193295.1
COORDINATES: similar to AA sequence:RefSeq:WP_015179641.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019496204.1
incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012412535.1
COORDINATES: similar to AA sequence:RefSeq:WP_019496605.1
COORDINATES: protein motif:HMM:PF12770.5,HMM:PF13424.4
COORDINATES: similar to AA sequence:RefSeq:WP_006103464.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197923.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864606.1
COORDINATES: similar to AA sequence:RefSeq:WP_016864605.1
COORDINATES: protein motif:HMM:PF13176.4,HMM:PF13424.4,HMM:PF14938.4
COORDINATES: similar to AA sequence:RefSeq:WP_015197915.1
COORDINATES: ab initio prediction:GeneMarkS+
Derived by automated computational analysis using gene prediction method: GeneMarkS+.
COORDINATES: similar to AA sequence:RefSeq:WP_015197913.1
CHAT domain-containing tetratricopeptide repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_015197912.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197911.1
frameshifted; incomplete; partial in the middle of a contig; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012413001.1
COORDINATES: similar to AA sequence:RefSeq:WP_015197909.1
COORDINATES: protein motif:HMM:PF00656.20
COORDINATES: similar to AA sequence:RefSeq:WP_017286106.1
COORDINATES: similar to AA sequence:RefSeq:WP_016872226.1
COORDINATES: similar to AA sequence:RefSeq:WP_016918868.1
COORDINATES: protein motif:HMM:PF00005.25,HMM:PF12698.5
ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:PF02368.16
COORDINATES: similar to AA sequence:RefSeq:WP_006278331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011713019.1
COORDINATES: protein motif:HMM:PF00270.27,HMM:PF00271.29
COORDINATES: similar to AA sequence:RefSeq:WP_011713017.1
COORDINATES: protein motif:HMM:PF13087.4
COORDINATES: protein motif:HMM:PF13086.4
COORDINATES: similar to AA sequence:RefSeq:WP_012412318.1
phospholipase D-like domain-containing protein
COORDINATES: protein motif:HMM:PF00325.18
COORDINATES: similar to AA sequence:RefSeq:WP_016864608.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012413262.1
alpha-ketoglutarate-dependent dioxygenase AlkB
COORDINATES: similar to AA sequence:RefSeq:WP_010999692.1
COORDINATES: similar to AA sequence:RefSeq:WP_015939434.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012412971.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948754.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006194164.1
COORDINATES: protein motif:HMM:PF10544.7
COORDINATES: similar to AA sequence:RefSeq:WP_017741192.1
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019495413.1
peptidase domain-containing ABC transporter
COORDINATES: similar to AA sequence:RefSeq:WP_017746185.1
COORDINATES: similar to AA sequence:RefSeq:WP_017743366.1
COORDINATES: protein motif:HMM:PF03160.12
COORDINATES: protein motif:HMM:PF00801.18
COORDINATES: similar to AA sequence:RefSeq:WP_015183267.1
COORDINATES: protein motif:HMM:PF01223.21
COORDINATES: similar to AA sequence:RefSeq:WP_013334633.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217687.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316571.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197189.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197194.1
COORDINATES: similar to AA sequence:RefSeq:WP_006197195.1
COORDINATES: similar to AA sequence:RefSeq:WP_004163435.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316567.1
COORDINATES: similar to AA sequence:RefSeq:WP_015115663.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316540.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278078.1
COORDINATES: protein motif:HMM:PF13577.4
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:PF00355.24
COORDINATES: similar to AA sequence:RefSeq:WP_009342510.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999580.1
COORDINATES: similar to AA sequence:RefSeq:WP_015111611.1
RNA polymerase sigma factor, RpoD/SigA family
COORDINATES: similar to AA sequence:RefSeq:WP_011316397.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953837.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364284.1
COORDINATES: similar to AA sequence:RefSeq:WP_015364290.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948733.1
COORDINATES: similar to AA sequence:RefSeq:YP_001386455.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015217644.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217642.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217641.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217640.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217639.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217638.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159384.1
AAC(3)-I family aminoglycoside N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019497266.1
COORDINATES: similar to AA sequence:RefSeq:WP_015126641.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016948835.1
plasmid mobilization relaxosome protein MobC
COORDINATES: similar to AA sequence:RefSeq:WP_015217636.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015217621.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948824.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211752.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211893.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948823.1
COORDINATES: similar to AA sequence:RefSeq:WP_006100957.1
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016948797.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948792.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217603.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217602.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217601.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217600.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948786.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217598.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217597.1
COORDINATES: similar to AA sequence:RefSeq:WP_020586463.1
COORDINATES: protein motif:HMM:PF00072.22,HMM:PF02518.24,HMM:PF08448.8, HMM:PF13493.4
COORDINATES: similar to AA sequence:RefSeq:WP_016948768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186392.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186393.1
COORDINATES: similar to AA sequence:RefSeq:WP_016953813.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316559.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186395.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186396.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217569.1
COORDINATES: similar to AA sequence:RefSeq:WP_015213412.1
COORDINATES: similar to AA sequence:RefSeq:WP_015213411.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994062.1
COORDINATES: similar to AA sequence:RefSeq:WP_017307369.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217594.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217558.1
COORDINATES: similar to AA sequence:RefSeq:WP_017314043.1
COORDINATES: similar to AA sequence:RefSeq:WP_015200037.1
COORDINATES: similar to AA sequence:RefSeq:WP_010994124.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217554.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016863801.1
COORDINATES: similar to AA sequence:RefSeq:WP_015183911.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217552.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217551.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217550.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217549.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217548.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217696.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217695.1
bifunctional 3'-5' exonuclease/DNA polymerase
COORDINATES: similar to AA sequence:RefSeq:WP_006275939.1
internal stop; incomplete; partial in the middle of a contig; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012413313.1
COORDINATES: similar to AA sequence:RefSeq:WP_016948799.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877563.1
COORDINATES: similar to AA sequence:RefSeq:WP_002617591.1
COORDINATES: similar to AA sequence:RefSeq:WP_012413004.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217662.1
COORDINATES: similar to AA sequence:RefSeq:WP_017653107.1
COORDINATES: similar to AA sequence:RefSeq:WP_015217660.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015117840.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599531.1
COORDINATES: similar to AA sequence:RefSeq:WP_015188067.1
COORDINATES: similar to AA sequence:RefSeq:WP_006276853.1
frameshifted; incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015145542.1
COORDINATES: protein motif:HMM:PF00109.24,HMM:PF16197.3
COORDINATES: similar to AA sequence:RefSeq:WP_008191793.1
COORDINATES: similar to AA sequence:RefSeq:WP_008191784.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080904.1
COORDINATES: similar to AA sequence:RefSeq:WP_009454428.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080902.1
COORDINATES: similar to AA sequence:RefSeq:WP_017742677.1
COORDINATES: similar to AA sequence:RefSeq:WP_015153660.1
COORDINATES: similar to AA sequence:RefSeq:WP_017317477.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080897.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080896.1
COORDINATES: similar to AA sequence:RefSeq:WP_015080895.1
aspartyl/asparaginyl beta-hydroxylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015080894.1
COORDINATES: protein motif:HMM:PF10111.7
COORDINATES: similar to AA sequence:RefSeq:WP_015080907.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412934.1
COORDINATES: similar to AA sequence:RefSeq:WP_006196382.1
reverse transcriptase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_016875671.1