Levilactobacillus suantsaii strain CBA3634 plasmid pCBA3634-04.
type: Entry
definition: Levilactobacillus suantsaii strain CBA3634 plasmid pCBA3634-04.
sequence version: NZ_CP059607.1
sequence date: 2022-12-08
sequence: sequence
division: CON
label: NZ_CP059607.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN15659520
keyword: RefSeq
source: Levilactobacillus suantsaii
organism: Levilactobacillus suantsaii
taxonomy: Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP059607.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 273.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 06:34:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,568\nCDSs (total) :: 2,477\nGenes (coding) :: 2,405\nCDSs (with protein) :: 2,405\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 36 of 72\nPseudo Genes (incomplete) :: 21 of 72\nPseudo Genes (internal stop) :: 23 of 72\nPseudo Genes (multiple problems) :: 8 of 72\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 9353
topology: linear
so has quality: SO_0000987
location: 1..9353
location: region:1-9353:1
RO_0002162: 2292255

NZ_CP059607
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN15659520
type: BioSample
SIO_000068: biosample

1
title: Culture-independent analysis of the bacterial communities in Chinese fermented vegetables and genomic analysis of lactic acid bacteria
author: Roh, S.W.
author: Song, H.S.
journal: Unpublished

2
title: Direct Submission
author: Roh, S.W.
author: Song, H.S.
journal: Submitted (28-JUL-2020) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition
type: FuzzyPosition

position:9353:1
position: 9353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9353:1:source
so part of: sequence
organism: Levilactobacillus suantsaii
mol type: genomic DNA
strain: CBA3634
plasmid: pCBA3634-04
country: South Korea
collection date: 2019-07

2292255
type: Taxonomy
SIO_000068: taxonomy

H3M12_RS12655
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12655
old locus tag: H3M12_12655
so part of: sequence
location: <1..247
location: region:1-247:1
so has part: feature:1-247:1:exon
subclass of: SO_0000010

position:247:1
position: 247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-247:1:exon

H3M12_RS12655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12655
old locus tag: H3M12_12655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015083018.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 2
transl table: 11
product: hypothetical protein
translation: HLPQLLSREDLKIRWQMNSRQSVHQVTSKPGFPQPVFTFNHGKTPLYLATEIQIFEINHPWVITPGARLAYSHWILRNVID
SIO_010081: H3M12_RS12655
subclass of: SO_0000673
so part of: H3M12_RS12655
location: <1..247
location: region:1-247:1
so has part: feature:1-247:1:exon

WP_182151159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-247:1:exon

H3M12_RS12660
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12660
old locus tag: H3M12_12660
pseudo: true
so part of: sequence
location: 622..835
location: region:622-835:1
so has part: feature:622-835:1:exon
subclass of: SO_0000010

position:622:1
position: 622
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:835:1
position: 835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:622-835:1:exon

H3M12_RS12660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12660
old locus tag: H3M12_12660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010620841.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: H3M12_RS12660
subclass of: SO_0000673
so part of: H3M12_RS12660
location: 622..835
location: region:622-835:1
so has part: feature:622-835:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:622-835:1:exon

H3M12_RS12665
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12665
old locus tag: H3M12_12665
so part of: sequence
location: 1555..2490
location: region:1555-2490:1
so has part: feature:1555-2490:1:exon
subclass of: SO_0000010

position:1555:1
position: 1555
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2490:1
position: 2490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1555-2490:1:exon

H3M12_RS12665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12665
old locus tag: H3M12_12665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016526818.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MSNELVKYDPELNTIPLRKFTPIEMNLFFSIVSRMRDQGNKTVRFSFDQLKELSNYKPTANKRFIDDIENTYQKILSLRFGRRSKSGLNREFFVMFTEFEIKGEAEEPYVDIQIYPKALHLLNDLESWVRYALTEFRNLKSSYAKTMFRLIKQFRTTGYSYFSKEDFFELLDIPKSYWNSPSNVDKKVIKPIREELTPLFRGLTIRKKYGKGRGKPVIGYSFTWKPERKDANDFSQGKFQDERQKLFNIQHNDELSDKEKWRAIDKVKCLPLGTTEKQVLAEKQAEHDQKIRDQARQEALAELRKGFGKHA
SIO_010081: H3M12_RS12665
subclass of: SO_0000673
so part of: H3M12_RS12665
location: 1555..2490
location: region:1555-2490:1
so has part: feature:1555-2490:1:exon

WP_063490264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1555-2490:1:exon

H3M12_RS12670
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12670
old locus tag: H3M12_12670
so part of: sequence
location: 2483..2998
location: region:2483-2998:1
so has part: feature:2483-2998:1:exon
subclass of: SO_0000010

position:2483:1
position: 2483
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2998:1
position: 2998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2483-2998:1:exon

H3M12_RS12670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12670
old locus tag: H3M12_12670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005918556.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF536 domain-containing protein
translation: MPKTIRELADELKVSKQTIQYHYQRLPAKNRQKDNQGTNMISLTAERIIRGKVTKPLVAKTQQTGSKKVTKTSKENNELIATLRREVTDLKSQRNKQIATKDRQIAHLIRLIDQQQQLQLTTLEENRELKAHIQKISGLLETSGPFQKRQNSTSEEDVSKNKSNKNWWHFW
SIO_010081: H3M12_RS12670
subclass of: SO_0000673
so part of: H3M12_RS12670
location: 2483..2998
location: region:2483-2998:1
so has part: feature:2483-2998:1:exon

WP_097558019.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2483-2998:1:exon

H3M12_RS12675
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12675
old locus tag: H3M12_12675
so part of: sequence
location: 3231..4022
location: region:3231-4022:1
so has part: feature:3231-4022:1:exon
subclass of: SO_0000010

position:3231:1
position: 3231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4022:1
position: 4022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3231-4022:1:exon

H3M12_RS12675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12675
old locus tag: H3M12_12675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016527214.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAIINTVFLISFIAFLYFIGRGTLKFLTNKDTKHSFKYGLLSLLVSLVFMVIGIIFDPAIKSSSESNNYNSVNSDSTTSKKSTDSTSQSHSSKSSSSKKYDFSKVKLGMTKSQVTAIMGKPTEENSSTLMYGSDDLDFENDKLFDGSPNEIHKAAIKKDQTEAKESSKKRVNEGQLKSFAKVFGQKDVETLQKYVGSAYSSIETSQGMAYGWKTDYGMLYRLDDSSTGITHVYKDGLGDSGTQLYVGQTIKQKQRRNYYYYN
SIO_010081: H3M12_RS12675
subclass of: SO_0000673
so part of: H3M12_RS12675
location: 3231..4022
location: region:3231-4022:1
so has part: feature:3231-4022:1:exon

WP_053566834.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3231-4022:1:exon

H3M12_RS12680
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12680
old locus tag: H3M12_12680
so part of: sequence
location: 4032..4286
location: region:4032-4286:1
so has part: feature:4032-4286:1:exon
subclass of: SO_0000010

position:4032:1
position: 4032
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4286:1
position: 4286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4032-4286:1:exon

H3M12_RS12680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12680
old locus tag: H3M12_12680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003642782.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIILTWLIIIIAIMYWILNKFVKFMTVGHLKLKDLIRAGLWSMIGIFIWKKLHPNEDIPDRFNSEINKYKELLAQTQKNHDKN
SIO_010081: H3M12_RS12680
subclass of: SO_0000673
so part of: H3M12_RS12680
location: 4032..4286
location: region:4032-4286:1
so has part: feature:4032-4286:1:exon

WP_003642782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4032-4286:1:exon

H3M12_RS12685
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12685
old locus tag: H3M12_12685
so part of: sequence
location: 4366..4734
location: region:4366-4734:1
so has part: feature:4366-4734:1:exon
subclass of: SO_0000010

position:4366:1
position: 4366
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4734:1
position: 4734
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4366-4734:1:exon

H3M12_RS12685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12685
old locus tag: H3M12_12685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003642781.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTKNLALTNGIVGLVGGLILLFGGWFVAGGALSDAATGSATSTSGTVALLNILKIAILALGIIALIYYKGDSRVNTAPGVLLIVGGAIALIPFLGWIGGIIAIIGGSLYLAALKNFSRPQQ
SIO_010081: H3M12_RS12685
subclass of: SO_0000673
so part of: H3M12_RS12685
location: 4366..4734
location: region:4366-4734:1
so has part: feature:4366-4734:1:exon

WP_182151161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4366-4734:1:exon

H3M12_RS12690
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12690
old locus tag: H3M12_12690
so part of: sequence
location: complement(5154..5456)
location: region:5154-5456:-1
so has part: feature:5154-5456:-1:exon
subclass of: SO_0000010

position:5154:-1
position: 5154
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5456:-1
position: 5456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5154-5456:-1:exon

H3M12_RS12690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12690
old locus tag: H3M12_12690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010625626.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MQIKQTKSFERELKKLVKKHFPITVLKPCLEAIVEQDVLVLNQIKDHALKGNWRGYREFHPARYGNYGKNYDNWIVIYQLDHDELILLLVATGSHEILNQ
SIO_010081: H3M12_RS12690
subclass of: SO_0000673
so part of: H3M12_RS12690
location: complement(5154..5456)
location: region:5154-5456:-1
so has part: feature:5154-5456:-1:exon

WP_015474715.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5154-5456:-1:exon

H3M12_RS12695
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12695
old locus tag: H3M12_12695
so part of: sequence
location: complement(5446..5724)
location: region:5446-5724:-1
so has part: feature:5446-5724:-1:exon
subclass of: SO_0000010

position:5446:-1
position: 5446
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5724:-1
position: 5724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5446-5724:-1:exon

H3M12_RS12695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12695
old locus tag: H3M12_12695
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003625288.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelB/DinJ family antitoxin
translation: MSNTIIKNKTISTRVTPDISERAKANLAKQGLTVSEYIRLSLVKAANNEVRLVSFLDSPEALAAKKEAETGQVKNIGSLTDFEDWIDKLDAN
SIO_010081: H3M12_RS12695
subclass of: SO_0000673
so part of: H3M12_RS12695
location: complement(5446..5724)
location: region:5446-5724:-1
so has part: feature:5446-5724:-1:exon

WP_003625288.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5446-5724:-1:exon

H3M12_RS12700
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12700
old locus tag: H3M12_12700
pseudo: true
so part of: sequence
location: complement(<6088..6276)
location: region:6088-6276:-1
so has part: feature:6088-6276:-1:exon
subclass of: SO_0000010

position:6088:-1
position: 6088
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:6276:-1
position: 6276
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6088-6276:-1:exon

H3M12_RS12700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12700
old locus tag: H3M12_12700
inference: COORDINATES: similar to AA sequence:RefSeq:WP_086558186.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS3 family transposase
SIO_010081: H3M12_RS12700
subclass of: SO_0000673
so part of: H3M12_RS12700
location: complement(<6088..6276)
location: region:6088-6276:-1
so has part: feature:6088-6276:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6088-6276:-1:exon

H3M12_RS12705
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12705
old locus tag: H3M12_12705
so part of: sequence
location: 6402..7454
location: region:6402-7454:1
so has part: feature:6402-7454:1:exon
subclass of: SO_0000010

position:6402:1
position: 6402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7454:1
position: 7454
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6402-7454:1:exon

H3M12_RS12705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12705
old locus tag: H3M12_12705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003608391.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter permease
translation: MFLAIREIKKEKLRYGLILTVVVLISYLIFILSALALGLATANTAAVDSWQSKSFVMTKDANGNAGQSLLTTKQVDQLSDDKTATLGITPVNMKIGGKRESAQFVGMNNDEYIAKNLQLTKGHLPKAANEVVLADSVDKDIYGMGDKISIGLSDTKYKIVGYAKNATYNTAPVIYGALAQWRVIKGVSDQFQGSVVTSKTSQSVDDKALKTYSYQAFINKLPGYTPQKATFGLMIGFLIVISLIVITIFLYILTVQKLPNLAVLRAQGIPNRFLAQNTLFETFFIMATGIVVGAVLSALTEFGIPDSVPMAFDWGLMGLIAAGLMVTGLLGAIIPIRVISKIDPVSVIGG
SIO_010081: H3M12_RS12705
subclass of: SO_0000673
so part of: H3M12_RS12705
location: 6402..7454
location: region:6402-7454:1
so has part: feature:6402-7454:1:exon

WP_046811107.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6402-7454:1:exon

H3M12_RS12710
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12710
old locus tag: H3M12_12710
so part of: sequence
location: 7459..8139
location: region:7459-8139:1
so has part: feature:7459-8139:1:exon
subclass of: SO_0000010

position:7459:1
position: 7459
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8139:1
position: 8139
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7459-8139:1:exon

H3M12_RS12710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12710
old locus tag: H3M12_12710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014294397.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MREEKLALEHVTKQFGQKTNLVTALEDVSLAFKAGEVSLIIGPSGSGKSTLLTILGGLQTPTDGSVRLNGHDISDLSTKEAEKTRLEQIGFVLQAYNLVPYLTVADQFKLVDQVKPNNNLSQDGFDKIIETLGIQKLLNKYPGELSGGQQQRVAIARALYTDPAIILADEPTAALDTARVKEVGQLFANIAHDEEKAVVIVTHDDRLREFSDNVYKIVDGKLSNTD
SIO_010081: H3M12_RS12710
subclass of: SO_0000673
so part of: H3M12_RS12710
location: 7459..8139
location: region:7459-8139:1
so has part: feature:7459-8139:1:exon

WP_046811108.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7459-8139:1:exon

H3M12_RS12715
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12715
old locus tag: H3M12_12715
so part of: sequence
location: complement(8709..9065)
location: region:8709-9065:-1
so has part: feature:8709-9065:-1:exon
subclass of: SO_0000010

position:8709:-1
position: 8709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9065:-1
position: 9065
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8709-9065:-1:exon

H3M12_RS12715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12715
old locus tag: H3M12_12715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002834562.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system YafQ family toxin
translation: MKKLRFKPRATFNADLKRLASLDKSIIDEVRAAIDLLLEQQQLPPEFEDHELNRRMSGYNEFHLRDTPKNKTPSETNDVLVVYTIDKDELVLIGIRVGSHDRLFPGQNRSKRYRKNDE
SIO_010081: H3M12_RS12715
subclass of: SO_0000673
so part of: H3M12_RS12715
location: complement(8709..9065)
location: region:8709-9065:-1
so has part: feature:8709-9065:-1:exon

WP_002834562.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8709-9065:-1:exon

H3M12_RS12720
type: Gene
subclass of: SO_0000704
RO_0002162: 2292255
locus tag: H3M12_RS12720
old locus tag: H3M12_12720
so part of: sequence
location: complement(9065..9343)
location: region:9065-9343:-1
so has part: feature:9065-9343:-1:exon
subclass of: SO_0000010

position:9343:-1
position: 9343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9065-9343:-1:exon

H3M12_RS12720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2292255
locus tag: H3M12_RS12720
old locus tag: H3M12_12720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003586674.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MTLALTQSDFRANLKKYLDQVNDEDETVYIARSNSRAVAIVSQEKMDWLERALKAKEGSLEYAIARDQLIKRHVLPDDEIVESDDGYWGQFK
SIO_010081: H3M12_RS12720
subclass of: SO_0000673
so part of: H3M12_RS12720
location: complement(9065..9343)
location: region:9065-9343:-1
so has part: feature:9065-9343:-1:exon

WP_010620850.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9065-9343:-1:exon