Levilactobacillus suantsaii strain CBA3634 plasmid pCBA3634-02, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus.
Culture-independent analysis of the bacterial communities in Chinese fermented vegetables and genomic analysis of lactic acid bacteria
Submitted (28-JUL-2020) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP059605.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 273.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 06:34:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,568\nCDSs (total) :: 2,477\nGenes (coding) :: 2,405\nCDSs (with protein) :: 2,405\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 36 of 72\nPseudo Genes (incomplete) :: 21 of 72\nPseudo Genes (internal stop) :: 23 of 72\nPseudo Genes (multiple problems) :: 8 of 72\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015380482.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002833128.1
COORDINATES: similar to AA sequence:RefSeq:WP_015380480.1
COORDINATES: similar to AA sequence:RefSeq:WP_015380479.1
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008470458.1
COORDINATES: protein motif:HMM:TIGR01725.1
COORDINATES: similar to AA sequence:RefSeq:WP_008214381.1
COORDINATES: similar to AA sequence:RefSeq:WP_003636428.1
COORDINATES: protein motif:HMM:NF018589.2
COORDINATES: similar to AA sequence:RefSeq:WP_020282073.1
COORDINATES: protein motif:HMM:NF017520.2
COORDINATES: similar to AA sequence:RefSeq:WP_020282070.1
COORDINATES: similar to AA sequence:RefSeq:WP_003558826.1
COORDINATES: similar to AA sequence:RefSeq:WP_008214406.1
GO:0003796 - lysozyme activity [Evidence IEA]
GO:0016998 - cell wall macromolecule catabolic process [Evidence IEA]; GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003558832.1
COORDINATES: similar to AA sequence:RefSeq:WP_004466180.1
COORDINATES: similar to AA sequence:RefSeq:WP_010623287.1
COORDINATES: similar to AA sequence:RefSeq:WP_017262788.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020089731.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF012920.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005724925.1
phage antirepressor KilAC domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003644550.1
COORDINATES: protein motif:HMM:NF024835.2
COORDINATES: protein motif:HMM:NF019000.2
host-nuclease inhibitor Gam family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003638307.1
COORDINATES: similar to AA sequence:RefSeq:WP_003219228.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002831826.1
COORDINATES: similar to AA sequence:RefSeq:WP_001037655.1
COORDINATES: similar to AA sequence:RefSeq:WP_016058311.1
COORDINATES: similar to AA sequence:RefSeq:WP_015380172.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003644538.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_005716170.1
COORDINATES: similar to AA sequence:RefSeq:WP_013355638.1
COORDINATES: similar to AA sequence:RefSeq:WP_010623267.1
HNH endonuclease signature motif containing protein
COORDINATES: protein motif:HMM:NF019106.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002833133.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_011674571.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015380484.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.