Levilactobacillus suantsaii strain CBA3634 plasmid pCBA3634-01, complete sequence.
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Levilactobacillus.
Culture-independent analysis of the bacterial communities in Chinese fermented vegetables and genomic analysis of lactic acid bacteria
Submitted (28-JUL-2020) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP059604.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2019\nAssembly Method :: HGAP v. 3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 273.0x\nSequencing Technology :: PacBio RSII; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 06:34:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,568\nCDSs (total) :: 2,477\nGenes (coding) :: 2,405\nCDSs (with protein) :: 2,405\nGenes (RNA) :: 91\nrRNAs :: 6, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 6, 6 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 3\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 36 of 72\nPseudo Genes (incomplete) :: 21 of 72\nPseudo Genes (internal stop) :: 23 of 72\nPseudo Genes (multiple problems) :: 8 of 72\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019803487.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002834008.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014567995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011102207.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_003645671.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003645670.1
COORDINATES: similar to AA sequence:RefSeq:WP_053338758.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013727908.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_041092043.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004166596.1
COORDINATES: similar to AA sequence:RefSeq:WP_011674571.1
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF017515.2
COORDINATES: similar to AA sequence:RefSeq:WP_016366257.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017650132.1
PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_015474641.1
COORDINATES: similar to AA sequence:RefSeq:WP_008459746.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003712731.1
COORDINATES: similar to AA sequence:RefSeq:WP_015007096.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015007097.1
COORDINATES: similar to AA sequence:RefSeq:WP_013855348.1
COORDINATES: similar to AA sequence:RefSeq:WP_015007099.1
COORDINATES: protein motif:HMM:NF037025.2
COORDINATES: similar to AA sequence:RefSeq:WP_016370339.1
COORDINATES: similar to AA sequence:RefSeq:WP_003680243.1
COORDINATES: similar to AA sequence:RefSeq:WP_016381866.1
TrsD/TraD family conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_014216295.1
COORDINATES: similar to AA sequence:RefSeq:WP_014216294.1
CagC family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_003680239.1
COORDINATES: similar to AA sequence:RefSeq:WP_015007070.1
COORDINATES: similar to AA sequence:RefSeq:WP_014386868.1
COORDINATES: similar to AA sequence:RefSeq:WP_015474621.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007124583.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003691009.1
COORDINATES: similar to AA sequence:RefSeq:WP_016527414.1
COORDINATES: similar to AA sequence:RefSeq:WP_016370331.1
COORDINATES: similar to AA sequence:RefSeq:WP_016527412.1
COORDINATES: similar to AA sequence:RefSeq:WP_017866971.1
COORDINATES: similar to AA sequence:RefSeq:WP_013355080.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.