Desulfobacter hydrogenophilus strain AcRS1 plasmid unnamed2.
type: Entry
definition: Desulfobacter hydrogenophilus strain AcRS1 plasmid unnamed2.
sequence version: NZ_CP036315.1
sequence date: 2023-04-11
sequence: sequence
division: CON
label: NZ_CP036315.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN10963609
keyword: RefSeq
source: Desulfobacter hydrogenophilus
organism: Desulfobacter hydrogenophilus
taxonomy: Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP036315.1.\nBacteria and source DNA available from DSMZ\nChromosome and plasmids not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2019\nAssembly Method :: Racon v. FEBRUARY-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: SUB5204593\nGenome Coverage :: 1000.0x\nSequencing Technology :: Oxford Nanopore; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 02:39:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,628\nCDSs (total) :: 4,560\nGenes (coding) :: 4,507\nCDSs (with protein) :: 4,507\nGenes (RNA) :: 68\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 10 of 53\nPseudo Genes (incomplete) :: 40 of 53\nPseudo Genes (internal stop) :: 12 of 53\nPseudo Genes (multiple problems) :: 8 of 53\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000155
sequence length: 6989
topology: circular
so has quality: SO_0000988
location: 1..6989
location: region:1-6989:1
RO_0002162: 2291

NZ_CP036315
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN10963609
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Desulfobacter hydrogenophilus AcRS1
author: Marietou, A.
author: Lund, M.B.
author: Marshall, I.P.G.
author: Schreiber, L.
author: Jorgensen, B.
journal: Unpublished

2
title: Direct Submission
author: Marietou, A.
author: Lund, M.B.
author: Marshall, I.P.G.
author: Schreiber, L.
author: Jorgensen, B.
journal: Submitted (19-FEB-2019) Center for Geomicrobiology, Aarhus University, Ny Munkegade 114, Aarhus 8000, Denmark

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6989:1
position: 6989
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6989:1:source
so part of: sequence
organism: Desulfobacter hydrogenophilus
mol type: genomic DNA
strain: AcRS1
isolation source: marine sediment (ENVO:00002113)
type material: type strain of Desulfobacter hydrogenophilus
plasmid: unnamed2
country: Italy: Venice
collection date: 1984

2291
type: Taxonomy
SIO_000068: taxonomy

EYB58_RS22980
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS22980
old locus tag: EYB58_22980
so part of: sequence
location: 229..1170
location: region:229-1170:1
so has part: feature:229-1170:1:exon
subclass of: SO_0000010

position:229:1
position: 229
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1170:1
position: 1170
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:229-1170:1:exon

EYB58_RS22980
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS22980
old locus tag: EYB58_22980
inference: COORDINATES: protein motif:HMM:NF013235.2
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MDKSIIMNRNQIVKKSNALCRARHTTDSIWIGRLAAIVAAQVRKDDKEFQIYKIPVQQMLAAAGISRTGSIYRDLLPIAEKAMQKTIRIEEEGEWVLYTLFSKCRYKRGDGFVTVRFDPDLKLHFLNLGEKVNFTEYALIEYMSLQSTYSQHLFEYLMSWNDRPIVEIELAELHEKLATPPGSRVRKNFYDFERKILALAHKEIQKITSLRFEYEILNNKGQIRKKGQAAKIIRFVFSKGKVAKIAKRQKQADQKKQSAKNNTLFLSAVQCAQAHKDQGGCGKLRGTQECCKACMESKKTVETELDLFNQKKN
SIO_010081: EYB58_RS22980
subclass of: SO_0000673
so part of: EYB58_RS22980
location: 229..1170
location: region:229-1170:1
so has part: feature:229-1170:1:exon

WP_111960739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:229-1170:1:exon

EYB58_RS22985
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS22985
old locus tag: EYB58_22985
so part of: sequence
location: complement(1212..3641)
location: region:1212-3641:-1
so has part: feature:1212-3641:-1:exon
subclass of: SO_0000010

position:1212:-1
position: 1212
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3641:-1
position: 3641
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1212-3641:-1:exon

EYB58_RS22985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS22985
old locus tag: EYB58_22985
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toprim domain-containing protein
translation: MHIKFLKHGTGSAKGAADYLTQAQDSQGHDREVIQVLEGDPHQVAAVADALTFKHKYRSGVISWSPEDKPTPEQIKAVLGDYKKMAFAGLEPDQYAFSAVLHHEKDKGIHIHTLTARVDLVSGKSMNPAPPGWQKYFDTVRDMHNHANGWARPDDPDRARMVQPGFRAYVDAVKLKAGMQVESDPRQLVTEYLAHKIDTGEIENRQDVLTALHEAGLETPRAGKNYITVKDPETGEKFRMKGVLFNDNFQRGEFERQAQSQDGGRPGADRRPNQRAFERAKREFERLYQRRVEFNQDKFRVRNRPAEPGISQVKNSLDQGMDQAPGGRSGTLSGHLRRELGTDAIPVVERDQFHGRKSPGRVADQDRPGDVKRHENIGNRVKEAGWQVLYRDARGGHDRDRGHVRKKRSPENHKEIINGTDRVGTESNQYRNRIAETASRNYRKLAETSQQLDQASGKINRSLQRYSPGAVRDRTRELMTDELSRFKREINLAEFASTYGFALDKKKSGRQMRVMRTESGGKIGVFMGSGGDQMYHDFRNGKNGSVIDFCQYQTGKNLGHVRKELRSYLGSPRPTVQITPPRPKPTKETQAQELAQEKAKIRILKNVKYLANRGIDQRVLMDLRFLGAVVGDDRQNVCFPHHNEQGFSGLEKKNTDFTGFSKAGEKGLWFSKAPGDFEKIVICESGIDALSHAQLHPHNKAVYVSLAGQMSHAQDEQLAALVERNRGKAIIGAFDNDEAGKRYSSDLERICQKAGAKFEENLPQRKGQDWNDVLKKTPERVINQRWDDPEKAQKPLESQRQRRGMSAGM
SIO_010081: EYB58_RS22985
subclass of: SO_0000673
so part of: EYB58_RS22985
location: complement(1212..3641)
location: region:1212-3641:-1
so has part: feature:1212-3641:-1:exon

WP_111960741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1212-3641:-1:exon

EYB58_RS22990
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS22990
old locus tag: EYB58_22990
so part of: sequence
location: complement(3673..3984)
location: region:3673-3984:-1
so has part: feature:3673-3984:-1:exon
subclass of: SO_0000010

position:3673:-1
position: 3673
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3984:-1
position: 3984
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3673-3984:-1:exon

EYB58_RS22990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS22990
old locus tag: EYB58_22990
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008278942.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobC family plasmid mobilization relaxosome protein
translation: MAISKPKFLQIRISEEEKTALKKIADDSGQTMTELITKAIHRVRPFKVKDRKIQKEKILHLARIGNNLNQIARWCNTHKSGADAVQVIQHLAAIEHELKKAMT
SIO_010081: EYB58_RS22990
subclass of: SO_0000673
so part of: EYB58_RS22990
location: complement(3673..3984)
location: region:3673-3984:-1
so has part: feature:3673-3984:-1:exon

WP_111960743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3673-3984:-1:exon

EYB58_RS22995
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS22995
old locus tag: EYB58_22995
so part of: sequence
location: complement(4197..4454)
location: region:4197-4454:-1
so has part: feature:4197-4454:-1:exon
subclass of: SO_0000010

position:4197:-1
position: 4197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4454:-1
position: 4454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4197-4454:-1:exon

EYB58_RS22995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS22995
old locus tag: EYB58_22995
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEIKTKLEKLARLEAGNRERVKRYLNRVKKDGKKQISAIVSANAYNELNRLRDASIQAGKPSSFGQIIELALACYADSLRSKSG
SIO_010081: EYB58_RS22995
subclass of: SO_0000673
so part of: EYB58_RS22995
location: complement(4197..4454)
location: region:4197-4454:-1
so has part: feature:4197-4454:-1:exon

WP_111960745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4197-4454:-1:exon

EYB58_RS23000
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS23000
old locus tag: EYB58_23000
so part of: sequence
location: 4800..5150
location: region:4800-5150:1
so has part: feature:4800-5150:1:exon
subclass of: SO_0000010

position:4800:1
position: 4800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5150:1
position: 5150
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4800-5150:1:exon

EYB58_RS23000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS23000
old locus tag: EYB58_23000
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAFEKFTKTGTRPGVPKISIWTRGQIGFNNTAMLKHKVSDFKYSILFFDKDRNRIGIELTNDGKQDGVCKLIHRKGGGVSFSARAFLNTYKIDYSETKQYNFEYDEENKMFIVDLN
SIO_010081: EYB58_RS23000
subclass of: SO_0000673
so part of: EYB58_RS23000
location: 4800..5150
location: region:4800-5150:1
so has part: feature:4800-5150:1:exon

WP_111960733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4800-5150:1:exon

EYB58_RS23005
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS23005
old locus tag: EYB58_23005
so part of: sequence
location: complement(5205..5429)
location: region:5205-5429:-1
so has part: feature:5205-5429:-1:exon
subclass of: SO_0000010

position:5205:-1
position: 5205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5429:-1
position: 5429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5205-5429:-1:exon

EYB58_RS23005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS23005
old locus tag: EYB58_23005
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTSWPQNATYGQQRNHKLHFGQQAAISPIADRLFPIFLVPTSNIGAAEYKKGAFPNALFLFNVMLIMIEKMPKF
SIO_010081: EYB58_RS23005
subclass of: SO_0000673
so part of: EYB58_RS23005
location: complement(5205..5429)
location: region:5205-5429:-1
so has part: feature:5205-5429:-1:exon

WP_131072149.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5205-5429:-1:exon

EYB58_RS23010
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS23010
old locus tag: EYB58_23010
so part of: sequence
location: complement(5971..6195)
location: region:5971-6195:-1
so has part: feature:5971-6195:-1:exon
subclass of: SO_0000010

position:5971:-1
position: 5971
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6195:-1
position: 6195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5971-6195:-1:exon

EYB58_RS23010
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS23010
old locus tag: EYB58_23010
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSRGGFRPGAGRKPDGLVPKKKVSVSISQEATEALKNLEVVLSAKNQSQAVEFLLLEAWGKYENLDPDQRPKLS
SIO_010081: EYB58_RS23010
subclass of: SO_0000673
so part of: EYB58_RS23010
location: complement(5971..6195)
location: region:5971-6195:-1
so has part: feature:5971-6195:-1:exon

WP_131072150.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5971-6195:-1:exon

EYB58_RS23015
type: Gene
subclass of: SO_0000704
RO_0002162: 2291
locus tag: EYB58_RS23015
old locus tag: EYB58_23015
so part of: sequence
location: complement(6192..6416)
location: region:6192-6416:-1
so has part: feature:6192-6416:-1:exon
subclass of: SO_0000010

position:6192:-1
position: 6192
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6416:-1
position: 6416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6192-6416:-1:exon

EYB58_RS23015
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2291
locus tag: EYB58_RS23015
old locus tag: EYB58_23015
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRIENTVKEAHETPYAQAEGDLELGLAVRITYACTDHVENRHELMVEAVFEKIAQDLGEDAARNLFVKVVGGL
SIO_010081: EYB58_RS23015
subclass of: SO_0000673
so part of: EYB58_RS23015
location: complement(6192..6416)
location: region:6192-6416:-1
so has part: feature:6192-6416:-1:exon

WP_111960737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6192-6416:-1:exon