Desulfobacter hydrogenophilus strain AcRS1 plasmid unnamed1.
Bacteria; Thermodesulfobacteriota; Desulfobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacter.
Complete genome sequence of Desulfobacter hydrogenophilus AcRS1
Submitted (19-FEB-2019) Center for Geomicrobiology, Aarhus University, Ny Munkegade 114, Aarhus 8000, Denmark
REFSEQ INFORMATION: The reference sequence is identical to\nCP036314.1.\nBacteria and source DNA available from DSMZ\nChromosome and plasmids not circularized.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: FEB-2019\nAssembly Method :: Racon v. FEBRUARY-2019\nGenome Representation :: Full\nExpected Final Version :: Yes\nReference-guided Assembly :: SUB5204593\nGenome Coverage :: 1000.0x\nSequencing Technology :: Oxford Nanopore; Illumina MiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/11/2023 02:39:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,628\nCDSs (total) :: 4,560\nGenes (coding) :: 4,507\nCDSs (with protein) :: 4,507\nGenes (RNA) :: 68\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 10 of 53\nPseudo Genes (incomplete) :: 40 of 53\nPseudo Genes (internal stop) :: 12 of 53\nPseudo Genes (multiple problems) :: 8 of 53\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##
type strain of Desulfobacter hydrogenophilus
COORDINATES: similar to AA sequence:RefSeq:WP_020589558.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_020589557.1
COORDINATES: similar to AA sequence:RefSeq:WP_020589556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004072125.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004072228.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR01056.1
GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]; GO:0098847 - sequence-specific single stranded DNA binding [Evidence IEA]
GO:0051304 - chromosome separation [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]; GO:0006261 - DNA-templated DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004072116.1
COORDINATES: similar to AA sequence:RefSeq:WP_020586447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004072214.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_004072212.1
COORDINATES: similar to AA sequence:RefSeq:WP_004072210.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_004072206.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_011190373.1
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_020586468.1
COORDINATES: protein motif:HMM:NF019315.2
7TM diverse intracellular signaling domain-containing protein
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF036299.2
COORDINATES: similar to AA sequence:RefSeq:WP_005134413.1
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: similar to AA sequence:RefSeq:WP_003244657.1
excalibur calcium-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: similar to AA sequence:RefSeq:WP_013648933.1
COORDINATES: protein motif:HMM:NF025001.2
COORDINATES: similar to AA sequence:RefSeq:WP_012662428.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003494154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012174597.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010233592.1
COORDINATES: similar to AA sequence:RefSeq:WP_007527015.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017327289.1
COORDINATES: protein motif:HMM:NF025030.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020589560.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_020589559.1