Psychrobacillus glaciei strain PB01 plasmid pPB01, complete sequence.
type: Entry
definition: Psychrobacillus glaciei strain PB01 plasmid pPB01, complete sequence.
sequence version: NZ_CP031224.1
sequence date: 2022-10-27
sequence: sequence
division: CON
label: NZ_CP031224.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN09708448
keyword: RefSeq
source: Psychrobacillus glaciei
organism: Psychrobacillus glaciei
taxonomy: Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Psychrobacillus.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP031224.1.\nBacteria and source DNA available from Prof. Pyung Cheon Lee.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.2\nAssembly Name :: AJOU_Psychr_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 386.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/27/2022 02:21:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,182\nCDSs (total) :: 4,067\nGenes (coding) :: 3,974\nCDSs (with protein) :: 3,974\nGenes (RNA) :: 115\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 49 of 93\nPseudo Genes (incomplete) :: 45 of 93\nPseudo Genes (internal stop) :: 34 of 93\nPseudo Genes (multiple problems) :: 30 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 19243
topology: circular
so has quality: SO_0000988
location: 1..19243
location: region:1-19243:1
RO_0002162: 2283160

NZ_CP031224
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN09708448
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Psychrobacillus sp. PB01, isolated from iceberg, and comparative genome analysis of Psychrobacillus strains
author: Lee, P.C.
journal: Unpublished

2
title: Direct Submission
author: Lee, P.C.
journal: Submitted (24-JUL-2018) Molecular Science and Technology, Ajou University, Worldcup-ro 206, Suwon 16944, South Korea

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19243:1
position: 19243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19243:1:source
so part of: sequence
organism: Psychrobacillus glaciei
mol type: genomic DNA
strain: PB01
isolation source: Antarctic iceberg
type material: type strain of Psychrobacillus glaciei
plasmid: pPB01
country: Antarctica
collection date: 2011

2283160
type: Taxonomy
SIO_000068: taxonomy

PB01_RS20625
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20625
old locus tag: PB01_20840
so part of: sequence
location: 1..828
location: region:1-828:1
so has part: feature:1-828:1:exon
subclass of: SO_0000010

position:828:1
position: 828
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-828:1:exon

PB01_RS20625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20625
old locus tag: PB01_20840
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000253872.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3800 domain-containing protein
translation: MRDKKKYVLFIDETGSVDDQGTFGMTGVIFEYKYSVSDDERSSELKKRLDLYKLSCFNDKNLTIHLNDISRGKKEFEGFTADERALFIKSMPEVLGSLEFQIISVTIDKGKLNSYFSPSKNPYIIAFTHILEAFYLFIEKVDAESARIVIEARDDKKNLTVQKAFFDVYSNGTIHVDCEKYKDKIAGFIVAEKGTGKYQYGLEIADMVCNPIHRVRQGKIELAPKCFRYPRDNKIFSVIKSKIFSPSSDPTDIRNWGFKMVPVLKKKKVWSDTPS
SIO_010081: PB01_RS20625
subclass of: SO_0000673
so part of: PB01_RS20625
location: 1..828
location: region:1-828:1
so has part: feature:1-828:1:exon

WP_225986294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-828:1:exon

PB01_RS20630
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20630
old locus tag: PB01_20845
so part of: sequence
location: complement(1252..2133)
location: region:1252-2133:-1
so has part: feature:1252-2133:-1:exon
subclass of: SO_0000010

position:1252:-1
position: 1252
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2133:-1
position: 2133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1252-2133:-1:exon

PB01_RS20630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20630
old locus tag: PB01_20845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADKTFGVKVSEEMYEKAKLVIDESGVSAKDWFEKAIALYETNSIKLGSTDYTQDLTELESHTTRIYELIVNMMKRSVYLKEDAVKEIATKLESKEAIITDFQQKNAALKEQVIQKHEETVALQEQLKQLNESFETNQTMLENNQALIIEYKEKNDVLNGLVAQYKGYGDENEALKVELSEVQSTLTVRAVTAEQQANEFAKNLEDAIADAQKAQTQYKENLQMSIEKKDIEREKALLDLERQQQEKLAKQNVTHNEEIRSLYDEVAELRKVNEQNREKHQAEIDALKKQKDK
SIO_010081: PB01_RS20630
subclass of: SO_0000673
so part of: PB01_RS20630
location: complement(1252..2133)
location: region:1252-2133:-1
so has part: feature:1252-2133:-1:exon

WP_151702152.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1252-2133:-1:exon

PB01_RS20635
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20635
old locus tag: PB01_20850
so part of: sequence
location: 2368..3021
location: region:2368-3021:1
so has part: feature:2368-3021:1:exon
subclass of: SO_0000010

position:2368:1
position: 2368
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3021:1
position: 3021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2368-3021:1:exon

PB01_RS20635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20635
old locus tag: PB01_20850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVKFSFEMTIKELVDEMNSGGTQKDLYALSKIHKDVLPFLFKAAGYTREKQKYVAEDGANTNITIENLLPLAKELHKQAKIAKLTNESVAPKVVVLEAQKPQKKVEIQALTETNVGANVIDFSNKEQMQNAILEVLDLTMEDLEAVRSIGQHSEVAATTEKVSIFEEIKKLSGRDRANKTYFMSKELSGNIKEYADDNNIKVSQIIEIAIIDFLKKY
SIO_010081: PB01_RS20635
subclass of: SO_0000673
so part of: PB01_RS20635
location: 2368..3021
location: region:2368-3021:1
so has part: feature:2368-3021:1:exon

WP_151702153.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2368-3021:1:exon

PB01_RS20640
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20640
old locus tag: PB01_20855
so part of: sequence
location: 3046..3426
location: region:3046-3426:1
so has part: feature:3046-3426:1:exon
subclass of: SO_0000010

position:3046:1
position: 3046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3426:1
position: 3426
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3046-3426:1:exon

PB01_RS20640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20640
old locus tag: PB01_20855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNVYAINFNTKTFKIEADVHEIEYNNLDEQYEKLVELLNAEGLDVIDYNDDIAILVDDRGFEKKNNPVFEVKTEDNISCQLAGKLLFVRNIYNEESTDFGSITPQDVFHLKNNLLIALTGVLENTL
SIO_010081: PB01_RS20640
subclass of: SO_0000673
so part of: PB01_RS20640
location: 3046..3426
location: region:3046-3426:1
so has part: feature:3046-3426:1:exon

WP_151702154.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3046-3426:1:exon

PB01_RS20645
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20645
old locus tag: PB01_20860
so part of: sequence
location: complement(3534..4019)
location: region:3534-4019:-1
so has part: feature:3534-4019:-1:exon
subclass of: SO_0000010

position:3534:-1
position: 3534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4019:-1
position: 4019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3534-4019:-1:exon

PB01_RS20645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20645
old locus tag: PB01_20860
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRIKLLIYSMVVFSTLCITGCSNNSSEIDKEVKASENEFPPSMTGSISVNDKEYEIVVGNYRWERKQGLDTQVVETDAASPYQIAENFSAIMVEPNTNINIEIEENPRISLYLWNENGREKEVTLKNNQLLAPTSKGQYIYEILAEWSNGEVSYTFVVEVL
SIO_010081: PB01_RS20645
subclass of: SO_0000673
so part of: PB01_RS20645
location: complement(3534..4019)
location: region:3534-4019:-1
so has part: feature:3534-4019:-1:exon

WP_151702155.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3534-4019:-1:exon

PB01_RS20650
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20650
old locus tag: PB01_20865
so part of: sequence
location: complement(4214..4465)
location: region:4214-4465:-1
so has part: feature:4214-4465:-1:exon
subclass of: SO_0000010

position:4214:-1
position: 4214
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4465:-1
position: 4465
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4214-4465:-1:exon

PB01_RS20650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20650
old locus tag: PB01_20865
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKMEQLEFTVLPTALLNDTGFDYPIDKLLVICLFAYNDEGEGEPTKKILADMTSTCEEVVHDSLIRLVNNGMIELQEGSRLLD
SIO_010081: PB01_RS20650
subclass of: SO_0000673
so part of: PB01_RS20650
location: complement(4214..4465)
location: region:4214-4465:-1
so has part: feature:4214-4465:-1:exon

WP_151702156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4214-4465:-1:exon

PB01_RS20655
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20655
old locus tag: PB01_20870
so part of: sequence
location: complement(4509..5570)
location: region:4509-5570:-1
so has part: feature:4509-5570:-1:exon
subclass of: SO_0000010

position:4509:-1
position: 4509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5570:-1
position: 5570
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4509-5570:-1:exon

PB01_RS20655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20655
old locus tag: PB01_20870
inference: COORDINATES: protein motif:HMM:NF014537.2
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation factor domain-containing protein
translation: MDNAENIATIESTNSQANLTALIDWLEFTVHDLAVDTIINLILKLDPKDFMEVKKGRFGYQKQKLWNAGTLFLLYNLESGNDKMGVHIILTGQACRQYEANKSIVNIISNSKKTMARHNFTRVDIAIDDKKDSVINFDKFLRYSEDGHVSSLWYKYSLIMERRISDTETLGRTLYYGSKKSKIFMRVYDKKLEQIKKAKANQQKKEELLKVQNEWTRMELVFREERAGMAADYILMSKEIGILIRGVLNQYIRFVEPNPNSTNQQKRRWDTAPWWQDIIEDVEKIKLSQKKADRRIEDMKDWVKKQISPTLATILEATEGDMSWLVNVIVGGSSRLKNKHKQAIHQYMTERKK
SIO_010081: PB01_RS20655
subclass of: SO_0000673
so part of: PB01_RS20655
location: complement(4509..5570)
location: region:4509-5570:-1
so has part: feature:4509-5570:-1:exon

WP_151702157.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4509-5570:-1:exon

PB01_RS20660
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20660
old locus tag: PB01_20875
so part of: sequence
location: complement(5675..6238)
location: region:5675-6238:-1
so has part: feature:5675-6238:-1:exon
subclass of: SO_0000010

position:5675:-1
position: 5675
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6238:-1
position: 6238
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5675-6238:-1:exon

PB01_RS20660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20660
old locus tag: PB01_20875
inference: COORDINATES: protein motif:HMM:NF013670.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-acetylmuramoyl-L-alanine amidase
translation: MLDYGHGGSDPGAVYKNRKEANDNLILGQAVAKLLRAAGIQVDETRTTDKTMSLIERSNAEKKKKYDYFISFHRNAFQPEKAAGVETFIFSMDNSKSKGLATAIQNSIVQCGFVDRGVKTANYHVLEKTNSAALLLEVGFIDNTSDNKLFDSKFDTIAKMIAEAIILNFGIKTLEYCIKCGQKVLNN
SIO_010081: PB01_RS20660
subclass of: SO_0000673
so part of: PB01_RS20660
location: complement(5675..6238)
location: region:5675-6238:-1
so has part: feature:5675-6238:-1:exon

WP_151702172.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5675-6238:-1:exon

PB01_RS20665
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20665
old locus tag: PB01_20880
so part of: sequence
location: complement(6603..7043)
location: region:6603-7043:-1
so has part: feature:6603-7043:-1:exon
subclass of: SO_0000010

position:6603:-1
position: 6603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7043:-1
position: 7043
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6603-7043:-1:exon

PB01_RS20665
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20665
old locus tag: PB01_20880
inference: COORDINATES: protein motif:HMM:TIGR00621.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: single-stranded DNA-binding protein
translation: MNKIVLLGRLAADPEIKYAPNGTAVARFTLAVSRENDRDKADFFYCTAFGKLAQSLSDYCQKGRQVLLDGRVEINVVPDQQTNGKKTYVNVIVNSCEFLAKPQQQGELINSFNSQESNKQNQQPTNNRQQQYQQNMDSFKQNGQPY
SIO_010081: PB01_RS20665
subclass of: SO_0000673
so part of: PB01_RS20665
location: complement(6603..7043)
location: region:6603-7043:-1
so has part: feature:6603-7043:-1:exon

WP_151702158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6603-7043:-1:exon

PB01_RS20670
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20670
old locus tag: PB01_20885
so part of: sequence
location: complement(7048..7860)
location: region:7048-7860:-1
so has part: feature:7048-7860:-1:exon
subclass of: SO_0000010

position:7048:-1
position: 7048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7860:-1
position: 7860
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7048-7860:-1:exon

PB01_RS20670
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20670
old locus tag: PB01_20885
inference: COORDINATES: protein motif:HMM:NF012798.2
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MLEGKTLNTVTTYGFHLNAFNRWLKFEKQTLDGMKAMDLLGFKEWMLKKGKSERTFNAVISCLRGYFDFLILHEVVKTNPVSNLLRIKVKSYKQERLTDEQIHEFYTYIDQLKPNIRTAFYLMIGSGARVGEVAHLTKEDITIEKEGRIFVDIQDAKWGSDRKIPIVFEKSALIVHDYLQSVDTSSLPVFRVSKRTLQTHATTFMQKTNIPFSCHVLRHTFATLLLEKSVPIEKIQYLLGHKTPSATAHYTQSAHINVLDLAPSIWQGER
SIO_010081: PB01_RS20670
subclass of: SO_0000673
so part of: PB01_RS20670
location: complement(7048..7860)
location: region:7048-7860:-1
so has part: feature:7048-7860:-1:exon

WP_151702159.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7048-7860:-1:exon

PB01_RS20675
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20675
old locus tag: PB01_20890
so part of: sequence
location: complement(7969..8109)
location: region:7969-8109:-1
so has part: feature:7969-8109:-1:exon
subclass of: SO_0000010

position:7969:-1
position: 7969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8109:-1
position: 8109
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7969-8109:-1:exon

PB01_RS20675
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20675
old locus tag: PB01_20890
inference: COORDINATES: protein motif:HMM:NF024249.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: YvrJ family protein
translation: MNELIQYIADYGFAVIISVYLLVRMEKKIDTLSKSIDRLSQKNSND
SIO_010081: PB01_RS20675
subclass of: SO_0000673
so part of: PB01_RS20675
location: complement(7969..8109)
location: region:7969-8109:-1
so has part: feature:7969-8109:-1:exon

WP_151702160.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7969-8109:-1:exon

PB01_RS20680
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20680
old locus tag: PB01_20895
so part of: sequence
location: complement(8102..8338)
location: region:8102-8338:-1
so has part: feature:8102-8338:-1:exon
subclass of: SO_0000010

position:8102:-1
position: 8102
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8338:-1
position: 8338
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8102-8338:-1:exon

PB01_RS20680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20680
old locus tag: PB01_20895
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTDEHLKISTLAHTIYKKCECCNRVKDIFFKMMVKDAKTGNLLVGDFDLCKNCGQNFGDILNLEVTTENVVTDFKFNE
SIO_010081: PB01_RS20680
subclass of: SO_0000673
so part of: PB01_RS20680
location: complement(8102..8338)
location: region:8102-8338:-1
so has part: feature:8102-8338:-1:exon

WP_225986295.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8102-8338:-1:exon

PB01_RS20685
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20685
old locus tag: PB01_20900
so part of: sequence
location: complement(8410..8649)
location: region:8410-8649:-1
so has part: feature:8410-8649:-1:exon
subclass of: SO_0000010

position:8410:-1
position: 8410
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8649:-1
position: 8649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8410-8649:-1:exon

PB01_RS20685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20685
old locus tag: PB01_20900
inference: COORDINATES: protein motif:HMM:NF022597.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2922 domain-containing protein
translation: MSEKTRKVLQMQFNTAENKDVSIRLTDPKPDLTATTVQAAMELFNDLKVFNSISLMGPARLKGAKTVETVTSDFGITVG
SIO_010081: PB01_RS20685
subclass of: SO_0000673
so part of: PB01_RS20685
location: complement(8410..8649)
location: region:8410-8649:-1
so has part: feature:8410-8649:-1:exon

WP_151702161.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8410-8649:-1:exon

PB01_RS20690
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20690
old locus tag: PB01_20905
so part of: sequence
location: complement(8686..8907)
location: region:8686-8907:-1
so has part: feature:8686-8907:-1:exon
subclass of: SO_0000010

position:8686:-1
position: 8686
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8907:-1
position: 8907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8686-8907:-1:exon

PB01_RS20690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20690
old locus tag: PB01_20905
inference: COORDINATES: protein motif:HMM:NF019487.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF1659 domain-containing protein
translation: MAASLNFNRLDLVLSFVFDDGTGTGKMQTKRITLSKVRADITADEILQVATAFESLSSNEFIGVERVQRDSVL
SIO_010081: PB01_RS20690
subclass of: SO_0000673
so part of: PB01_RS20690
location: complement(8686..8907)
location: region:8686-8907:-1
so has part: feature:8686-8907:-1:exon

WP_151702162.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8686-8907:-1:exon

PB01_RS20700
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20700
old locus tag: PB01_20910
so part of: sequence
location: complement(10518..11510)
location: region:10518-11510:-1
so has part: feature:10518-11510:-1:exon
subclass of: SO_0000010

position:10518:-1
position: 10518
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11510:-1
position: 11510
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10518-11510:-1:exon

PB01_RS20700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20700
old locus tag: PB01_20910
inference: COORDINATES: protein motif:HMM:NF013235.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MRKNTKKIMISNESSIKKSNELSMAKLNAGLTLNQVQLLAFAIYTTQQKNVTTFQRRDFLKRFELVQYTTTEINDDVEVIFNLHFSTLDLEKDKFTYQHIFQSISYDKGTFEFKWADSVLPHILSLKNNYVVTDLNITSQFKSSFSWALYEYLKAHYGYWHKEVSKEALLRLFGVDKKKSYVGNTALFKKYVLDVAIKEIVKFTEIEVSYKEIKKGRSITGFDLIWSIGELTGSATRKQIDELERILTIISDDALEFMDLKEDENRKRASELIRESAKLKIHTEKPVSITIERADFLIKKANEYLKELQYLKENAEADKVPFYNWLEERE
SIO_010081: PB01_RS20700
subclass of: SO_0000673
so part of: PB01_RS20700
location: complement(10518..11510)
location: region:10518-11510:-1
so has part: feature:10518-11510:-1:exon

WP_151702164.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10518-11510:-1:exon

PB01_RS20705
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20705
old locus tag: PB01_20915
so part of: sequence
location: complement(12152..12727)
location: region:12152-12727:-1
so has part: feature:12152-12727:-1:exon
subclass of: SO_0000010

position:12152:-1
position: 12152
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12727:-1
position: 12727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12152-12727:-1:exon

PB01_RS20705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20705
old locus tag: PB01_20915
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016991691.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MARLIGYARVSTDEQNLDMQQQAIEKYAAEKGLDFIMYVEKISTRKTDRKELENALKAAAKGDVFVVYKLDRLARSTKELYQLTEQLKEKGVEFVSIHDSFDTTTPTGKAMFGMLAVFAEFERDIIQQRTLAGLEAARKRGKTGGRPKVDSKTKQRVITLYRANESATDIAKEYGISRATVYNIINENRNT
SIO_010081: PB01_RS20705
subclass of: SO_0000673
so part of: PB01_RS20705
location: complement(12152..12727)
location: region:12152-12727:-1
so has part: feature:12152-12727:-1:exon

WP_151702165.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12152-12727:-1:exon

PB01_RS20710
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20710
old locus tag: PB01_20920
so part of: sequence
location: 12986..13981
location: region:12986-13981:1
so has part: feature:12986-13981:1:exon
subclass of: SO_0000010

position:12986:1
position: 12986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13981:1
position: 13981
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12986-13981:1:exon

PB01_RS20710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20710
old locus tag: PB01_20920
inference: COORDINATES: protein motif:HMM:NF019371.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MNLIVSVIQLPYKAKKTANQLIKDVFKENGVQFKLISENDAIPYLEERNYYYKFACYRKNFSRNKKNKYIDLDFQYLISLSKLDKELRYILLQMTLEIEHFLKVKILKDISYNNQVDGYEIVSDYITSYNDKHSRPISIDLLIDRGKSQNSVSHGIYTKVINNQKYIAIWQLIELMQMYELQYFFDYYFTRFQQSDIKVNTYKSLIVSSSYIRNAAAHNSPLLVNLASCPSDAFTSKGINNRYINSLLKPHLKDAAIDLAVKPTYRFKDIAAVLKLYKLLRVSPTSSIDPIIDSLRNLLDSINNKPPCPKLNNDVMTFFTNLQKLFVDIYK
SIO_010081: PB01_RS20710
subclass of: SO_0000673
so part of: PB01_RS20710
location: 12986..13981
location: region:12986-13981:1
so has part: feature:12986-13981:1:exon

WP_151702166.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12986-13981:1:exon

PB01_RS20715
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20715
old locus tag: PB01_20925
so part of: sequence
location: complement(14156..14923)
location: region:14156-14923:-1
so has part: feature:14156-14923:-1:exon
subclass of: SO_0000010

position:14156:-1
position: 14156
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14923:-1
position: 14923
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14156-14923:-1:exon

PB01_RS20715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20715
old locus tag: PB01_20925
inference: COORDINATES: protein motif:HMM:NF013964.2
GO function: GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HNH endonuclease
translation: MEWMISANSKMYNFISAFDELSHVDWRQNANYQVGDIIYIYATKPYKRVMFKTEVKQVNLSPNEVIDDKKYWVNIDEYDKSLEGKYTRLKLLDYVNSEALTLERLREQGLKWAPQGPVKIRGEQLSQYLAINFNDYYSEGFFNDIDEDDIYEGHKRTVTVNKYERSSIARKNCVEKYGYNCAVCDMNFEDAYGDLGKSFIHVHHIVPLEQIGREYKVDYEKDLIPVCPNCHAMLHRKIDANYLSIAELKKKFNKR
SIO_010081: PB01_RS20715
subclass of: SO_0000673
so part of: PB01_RS20715
location: complement(14156..14923)
location: region:14156-14923:-1
so has part: feature:14156-14923:-1:exon

WP_151702167.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14156-14923:-1:exon

PB01_RS20720
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20720
old locus tag: PB01_20930
so part of: sequence
location: complement(14969..15232)
location: region:14969-15232:-1
so has part: feature:14969-15232:-1:exon
subclass of: SO_0000010

position:14969:-1
position: 14969
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15232:-1
position: 15232
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14969-15232:-1:exon

PB01_RS20720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20720
old locus tag: PB01_20930
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019680697.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: metal-binding protein
translation: MKTYKLLNSVGDTYSSETPGLLGGHRKLKIYGRLDCSSALSFIQKGHYVKYRVFFADEKTAISAGYRPCARCMKEAYQLWKSSHTIV
SIO_010081: PB01_RS20720
subclass of: SO_0000673
so part of: PB01_RS20720
location: complement(14969..15232)
location: region:14969-15232:-1
so has part: feature:14969-15232:-1:exon

WP_151702174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14969-15232:-1:exon

PB01_RS20725
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20725
old locus tag: PB01_20935
so part of: sequence
location: complement(15384..16052)
location: region:15384-16052:-1
so has part: feature:15384-16052:-1:exon
subclass of: SO_0000010

position:15384:-1
position: 15384
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16052:-1
position: 16052
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15384-16052:-1:exon

PB01_RS20725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20725
old locus tag: PB01_20935
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNITNFNRDLIAEQVLGQYLDKFYYPRQDFTEFERIIDQSQQYQGIDTTVVTSNNDKLLIDEKGLMSIPKPISTFALELSYLNPSGARNIGWLYNDYKRSTHYLFCWIKREEVPVQNVQLKDIHYVTAMLVSRTRLQQHLLNTYGIDAASTQTKVNQILAASKPDDLDRLENLSPSSDSRYHFSKDLPEQPINIVMTRDELIQSGAVDSYHLVKRSGLSVI
SIO_010081: PB01_RS20725
subclass of: SO_0000673
so part of: PB01_RS20725
location: complement(15384..16052)
location: region:15384-16052:-1
so has part: feature:15384-16052:-1:exon

WP_151702168.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15384-16052:-1:exon

PB01_RS20730
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20730
old locus tag: PB01_20940
so part of: sequence
location: complement(16090..16719)
location: region:16090-16719:-1
so has part: feature:16090-16719:-1:exon
subclass of: SO_0000010

position:16090:-1
position: 16090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16719:-1
position: 16719
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16090-16719:-1:exon

PB01_RS20730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20730
old locus tag: PB01_20940
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011962896.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEYRMYSHRYAAAILNTDREFADIWLEVQEVIHSITEEQIINSFEAKGYRRGKSISTTINELLKVGFIARGWRSESPIFQNPDYTGDTWRLDFAKDNISIEVAFNHGTVIAWNLLKPVLASELNHVQKAIQTKLGIIICVTEEMKVAGGFDGAIGTYEKFIEYLPPLNNQLSVPLLIIGLEAPQSFSITHVPNPQKANSKMGIVERILI
SIO_010081: PB01_RS20730
subclass of: SO_0000673
so part of: PB01_RS20730
location: complement(16090..16719)
location: region:16090-16719:-1
so has part: feature:16090-16719:-1:exon

WP_151702169.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16090-16719:-1:exon

PB01_RS20735
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
locus tag: PB01_RS20735
old locus tag: PB01_20945
so part of: sequence
location: complement(16754..17755)
location: region:16754-17755:-1
so has part: feature:16754-17755:-1:exon
subclass of: SO_0000010

position:16754:-1
position: 16754
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17755:-1
position: 17755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16754-17755:-1:exon

PB01_RS20735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
locus tag: PB01_RS20735
old locus tag: PB01_20945
inference: COORDINATES: protein motif:HMM:NF021106.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MKVLSSDLKQQLFNEFPQMLSSLIIVSPYISLWTIEQLLEKIQKYNEPVKITVITTFERNNFLNGASSLEAIQLLVKNDIQVYALNNLHTKAYIFNDSKCIVGSANFTRNGLLFNHELLIVLDQVHDSEPIVEYTHKLLDDIQKNGDWLITEDLIKIELDALQEISPRVDVEQVPTKFIWGANLDTQIQSQNIVLSIPAGDTIHLIESFHIHAHPVKKGYNYKETDFITFRRNKGGIMTNVYKIHQKFELDMEEWQDSINTLPISSVLKKNLSNYILNRWKGFGFEQTLTYKFYILEEHTILNNEPRPEINNTGNRYYDLKHLMDGNPYVYTL
SIO_010081: PB01_RS20735
subclass of: SO_0000673
so part of: PB01_RS20735
location: complement(16754..17755)
location: region:16754-17755:-1
so has part: feature:16754-17755:-1:exon

WP_151702170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16754-17755:-1:exon

PB01_RS20740
type: Gene
subclass of: SO_0000704
RO_0002162: 2283160
gene: dcm
locus tag: PB01_RS20740
old locus tag: PB01_20950
so part of: sequence
location: 17903..19159
location: region:17903-19159:1
so has part: feature:17903-19159:1:exon
subclass of: SO_0000010

position:17903:1
position: 17903
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19159:1
position: 19159
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17903-19159:1:exon

PB01_RS20740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2283160
gene: dcm
locus tag: PB01_RS20740
old locus tag: PB01_20950
EC number: 2.1.1.37
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017175017.1
GO function: GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO process: GO:0006304 - DNA modification [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA (cytosine-5-)-methyltransferase
translation: MSNQLNVVELFAGVGGFRLGLETADKSFFKTVWANQWEPSKKAQHAFDCYASHFKEGINSNSNTDISEVEDSFFQQLNINFLVGGFPCQDYSVARSLSGEQGIHGKKGVLFWEIKRILENSNPNYVLLENVDRLIKSPAKQRGRDFAVMLATFRDLGYIVEWRVINASEYGNAQRRRRVFIFAYKKNLGYAQQQMSLTKEELLFKDGFFARIFPVKDKAFKGRNIPDELPTDIVKISEEYSFNFHTAGIMIDGFFQTMQPEAKEPQPVPLNKILLPEVEIEEEYYLTEAEVEKFSYLRGSKKIERTSADGHKYIYAEGGMSPVDDINLPGRTMLTSEGSVNRSTHIVEVNGRKRYLTPIECERLNGFEDNWTEGMPKRMRYFCMGNALVVNLIRDMGNRIKEIELEEQNKSTQSKVPM
SIO_010081: PB01_RS20740
subclass of: SO_0000673
so part of: PB01_RS20740
location: 17903..19159
location: region:17903-19159:1
so has part: feature:17903-19159:1:exon

WP_151702171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17903-19159:1:exon