Psychrobacillus glaciei strain PB01 plasmid pPB01, complete sequence.
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Psychrobacillus.
Complete genome sequence of Psychrobacillus sp. PB01, isolated from iceberg, and comparative genome analysis of Psychrobacillus strains
Submitted (24-JUL-2018) Molecular Science and Technology, Ajou University, Worldcup-ro 206, Suwon 16944, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP031224.1.\nBacteria and source DNA available from Prof. Pyung Cheon Lee.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: canu v. 1.2\nAssembly Name :: AJOU_Psychr_1.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 386.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/27/2022 02:21:53\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,182\nCDSs (total) :: 4,067\nGenes (coding) :: 3,974\nCDSs (with protein) :: 3,974\nGenes (RNA) :: 115\nrRNAs :: 11, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 11, 11 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 5\nPseudo Genes (total) :: 93\nCDSs (without protein) :: 93\nPseudo Genes (ambiguous residues) :: 0 of 93\nPseudo Genes (frameshifted) :: 49 of 93\nPseudo Genes (incomplete) :: 45 of 93\nPseudo Genes (internal stop) :: 34 of 93\nPseudo Genes (multiple problems) :: 30 of 93\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_000253872.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014537.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
replication initiation factor domain-containing protein
COORDINATES: protein motif:HMM:NF013670.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024249.2
COORDINATES: protein motif:HMM:NF022597.2
COORDINATES: protein motif:HMM:NF019487.2
COORDINATES: protein motif:HMM:NF013235.2
COORDINATES: similar to AA sequence:RefSeq:WP_016991691.1
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: protein motif:HMM:NF013964.2
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019680697.1
COORDINATES: similar to AA sequence:RefSeq:WP_011962896.1
COORDINATES: protein motif:HMM:NF021106.2
COORDINATES: similar to AA sequence:RefSeq:WP_017175017.1
GO:0003886 - DNA (cytosine-5-)-methyltransferase activity [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]