Pseudoalteromonas carrageenovora strain KCTC 22325 plasmid pKCTC22325, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.
Genome sequencing of Pseudoalteromonas carrageenovora KCTC 22325
Submitted (06-MAR-2018) Korean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology, 181 Ipsin-gil, Jeongeup 56212, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP027525.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Genome sequencing of Pseudoalteromonas\n carrageenovora KCTC 22325\nlat_lon :: 44.63 N 63.43 W\ndepth :: 0 m\nalt_elev :: 0 m\ncountry :: Canada\nenvironment :: Seawater\ngeo_loc_name :: Canada: Cow bay, Novo Scotia\ncollection_date :: 1953\nenv_biome :: plant-associated habitat\nenv_feature :: oceanic zone\nenv_material :: sea water\nploidy :: haploid\nnum_replicons :: 3\nextrachrom_elements :: 1\nref_biomaterial :: PMID:13269093\nsource_mat_id :: KCTC 22325\nbiotic_relationship :: free living\ntrophic_level :: chemoheterotroph\nrel_to_oxygen :: aerobic\nisol_growth_condt :: PMID:13269093\nsequencing_meth :: PacBio RS II sequencing\nassembly :: SMRT Analysis v2.3.0\nfinishing_strategy :: complete; 198.06x coverage; 3 contigs\nannot_source :: prodigal v2.6.3\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.3.0\nGenome Coverage :: 198.06x\nSequencing Technology :: PacBio RS II with P6-C4 chemistry\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 04:57:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,110\nCDSs (total) :: 3,976\nGenes (coding) :: 3,943\nCDSs (with protein) :: 3,943\nGenes (RNA) :: 134\nrRNAs :: 10, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 10, 9, 9 (5S, 16S, 23S)\ntRNAs :: 102\nncRNAs :: 4\nPseudo Genes (total) :: 33\nCDSs (without protein) :: 33\nPseudo Genes (ambiguous residues) :: 0 of 33\nPseudo Genes (frameshifted) :: 15 of 33\nPseudo Genes (incomplete) :: 17 of 33\nPseudo Genes (internal stop) :: 11 of 33\nPseudo Genes (multiple problems) :: 8 of 33\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_016706542.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007375145.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007375144.1
GO:0008484 - sulfuric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007375143.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375142.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375141.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007375140.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014427.2
COORDINATES: similar to AA sequence:RefSeq:WP_011573766.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024907.2
COORDINATES: protein motif:HMM:NF012801.2
GO:0009279 - cell outer membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007378530.1
COORDINATES: similar to AA sequence:RefSeq:WP_007378529.1
COORDINATES: similar to AA sequence:RefSeq:WP_009491270.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: protein motif:HMM:NF020039.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007378526.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0051119 - sugar transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007378525.1
COORDINATES: similar to AA sequence:RefSeq:WP_007378523.1
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_007378522.1
COORDINATES: protein motif:HMM:NF016894.2
COORDINATES: similar to AA sequence:RefSeq:WP_007378520.1
GO:0008674 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase activity [Evidence IEA]
GO:0034194 - D-galactonate catabolic process [Evidence IEA]
2-dehydro-3-deoxy-6-phosphogalactonate aldolase
COORDINATES: similar to AA sequence:RefSeq:WP_017446801.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007378518.1
COORDINATES: similar to AA sequence:RefSeq:WP_007378517.1
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012925.2
COORDINATES: similar to AA sequence:RefSeq:WP_007378513.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_013463098.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004589566.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013463100.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016707550.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004589569.1
COORDINATES: similar to AA sequence:RefSeq:WP_011328765.1
COORDINATES: similar to AA sequence:RefSeq:WP_010558039.1
COORDINATES: similar to AA sequence:RefSeq:WP_011328763.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004589246.1
COORDINATES: similar to AA sequence:RefSeq:WP_011328760.1
COORDINATES: similar to AA sequence:RefSeq:WP_004589248.1
COORDINATES: similar to AA sequence:RefSeq:WP_019933752.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012323886.1
COORDINATES: similar to AA sequence:RefSeq:WP_013551260.1
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011467169.1
LacI family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:NF024742.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017086151.1
NADH:flavin oxidoreductase/NADH oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016798105.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_010552919.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583926.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007583928.1
GO:0004518 - nuclease activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007583929.1
COORDINATES: similar to AA sequence:RefSeq:WP_007583930.1
COORDINATES: protein motif:HMM:NF017539.2
COORDINATES: similar to AA sequence:RefSeq:WP_017091813.1
COORDINATES: similar to AA sequence:RefSeq:WP_017091812.1
COORDINATES: similar to AA sequence:RefSeq:WP_000226089.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420198.1
reverse transcriptase domain-containing protein
COORDINATES: protein motif:HMM:NF021576.2
COORDINATES: protein motif:HMM:NF025687.2
COORDINATES: similar to AA sequence:RefSeq:WP_008134442.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375502.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008134300.1
COORDINATES: protein motif:HMM:NF027483.2
COORDINATES: similar to AA sequence:RefSeq:WP_005365712.1
COORDINATES: similar to AA sequence:RefSeq:WP_004739424.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004726255.1
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF003472.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004335 - galactokinase activity [Evidence IEA]
GO:0046835 - carbohydrate phosphorylation [Evidence IEA]; GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007280066.1
COORDINATES: similar to AA sequence:RefSeq:WP_017444845.1
COORDINATES: protein motif:HMM:TIGR01782.1
COORDINATES: similar to AA sequence:RefSeq:WP_015809177.1
COORDINATES: similar to AA sequence:RefSeq:WP_012587005.1
COORDINATES: similar to AA sequence:RefSeq:WP_016710373.1
COORDINATES: similar to AA sequence:RefSeq:WP_016710616.1
COORDINATES: similar to AA sequence:RefSeq:WP_008139370.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376644.1
COORDINATES: similar to AA sequence:RefSeq:WP_010555224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376646.1
COORDINATES: similar to AA sequence:RefSeq:WP_006793320.1
COORDINATES: similar to AA sequence:RefSeq:WP_008166962.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376649.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008110750.1
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002959141.1
COORDINATES: similar to AA sequence:RefSeq:WP_007376652.1