Campylobacter novaezeelandiae strain W441b plasmid pCNZW441b2, complete sequence.
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter.
Complete genome sequencing of Campylobacter and Arcobacter type strains
Submitted (11-JUN-2021) Produce Safety and Microbiology, USDA, ARS, WRRC, 800 Buchanan St., Albany, CA 94710, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP076659.1.\nBacteria and source DNA available from Massey University, New\nZealand.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Newbler v. 2.6\nGenome Coverage :: 249x\nSequencing Technology :: Illumina MiSeq; 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/29/2023 03:53:06\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,629\nCDSs (total) :: 1,574\nGenes (coding) :: 1,547\nCDSs (with protein) :: 1,547\nGenes (RNA) :: 55\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 3\nPseudo Genes (total) :: 27\nCDSs (without protein) :: 27\nPseudo Genes (ambiguous residues) :: 0 of 27\nPseudo Genes (frameshifted) :: 10 of 27\nPseudo Genes (incomplete) :: 18 of 27\nPseudo Genes (internal stop) :: 1 of 27\nPseudo Genes (multiple problems) :: 2 of 27\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002815211.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
TrbM/KikA/MpfK family conjugal transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_002957415.1
COORDINATES: protein motif:HMM:NF020419.2
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: protein motif:HMM:NF024554.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002815410.1
COORDINATES: similar to AA sequence:RefSeq:YP_002344838.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002815078.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117593.1
COORDINATES: similar to AA sequence:RefSeq:WP_002815082.1
COORDINATES: similar to AA sequence:RefSeq:WP_002815096.1
COORDINATES: similar to AA sequence:RefSeq:WP_002815097.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117549.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_011117550.1
DNA type IV secretion system protein ComB10
COORDINATES: similar to AA sequence:RefSeq:WP_011117552.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117553.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF019997.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: similar to AA sequence:RefSeq:WP_011117558.1
GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_011117566.1
COORDINATES: similar to AA sequence:RefSeq:WP_002899137.1
COORDINATES: similar to AA sequence:RefSeq:WP_011117572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014517459.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002815209.1
COORDINATES: similar to AA sequence:RefSeq:WP_014517461.1