Rhizobium oryzihabitans strain M15 plasmid p4, complete sequence.
type: Entry
definition: Rhizobium oryzihabitans strain M15 plasmid p4, complete sequence.
sequence version: NZ_CP048636.1
sequence date: 2023-05-06
sequence: sequence
division: CON
label: NZ_CP048636.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14048699
keyword: RefSeq
source: Rhizobium oryzihabitans
organism: Rhizobium oryzihabitans
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP048636.1.\nBacteria and source DNA available from Key Laboratory of Microbial\nResources Collection and Preservation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: HGAP4 v. 2018-06; CANU v. 1.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina miseq+Pacbio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:03:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,749\nCDSs (total) :: 5,670\nGenes (coding) :: 5,255\nCDSs (with protein) :: 5,255\nGenes (RNA) :: 79\nrRNAs :: 6, 4, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 4, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 415\nCDSs (without protein) :: 415\nPseudo Genes (ambiguous residues) :: 0 of 415\nPseudo Genes (frameshifted) :: 352 of 415\nPseudo Genes (incomplete) :: 76 of 415\nPseudo Genes (internal stop) :: 8 of 415\nPseudo Genes (multiple problems) :: 21 of 415\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 30620
topology: circular
so has quality: SO_0000988
location: 1..30620
location: region:1-30620:1
RO_0002162: 2267833

NZ_CP048636
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14048699
type: BioSample
SIO_000068: biosample

1
title: Plant-Promoting Endophytic Bacterium Rhizobium oryzihabitans sp. nov., Isolated from the Root of Rice
author: zhao, J.
author: Zhang, G.
journal: Unpublished

2
title: Direct Submission
author: zhao, J.
author: Zhang, G.
journal: Submitted (06-FEB-2020) Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, zhongguancunnandajie, beijing, beijing 100081, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30620:1
position: 30620
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-30620:1:source
so part of: sequence
organism: Rhizobium oryzihabitans
mol type: genomic DNA
strain: M15
isolation source: the root of rice
type material: type material of Rhizobium oryzihabitans
plasmid: p4
country: China
collection date: 2017
collected by: zhaojuanjuan
identified by: zhaojuanjuan

2267833
type: Taxonomy
SIO_000068: taxonomy

G3A56_RS25490
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25490
old locus tag: G3A56_25490
so part of: sequence
location: complement(join(29948..30620,1..131))
location: region:1-30620:-1
so has part: feature:1-131:-1:exon
so has part: feature:29948-30620:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:30620:-1
position: 30620
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-131:-1:exon

position:131:-1
position: 131
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:29948-30620:-1:exon

position:29948:-1
position: 29948
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

G3A56_RS25490
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25490
old locus tag: G3A56_25490
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO process: GO:0015803 - branched-chain amino acid transport [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: branched-chain amino acid ABC transporter permease
translation: MRLHDLPDVIQATQLDVFSASLLAGGAGALAALVAGIPLLRLTGISASIGTFAVLIVTISIAGNWDGLTGGRGSLIGLPVYVTPLVACAWSIVALIIAWAFTRSRLGLMIRASRGDEIAARASGVNVYRQRLIALVVSGFVMGVGGSLYGHFLGILSANAFFLDLTFITLAMLVVGGMESLSGAVIGTLLVSLLLEILRRFEGGFSIAGVSVGEMPGLAEVGLAVIMLCVLIARPSGIMRGRDLMFRRPRAGADTPLTTAIPAERNA
SIO_010081: G3A56_RS25490
subclass of: SO_0000673
so part of: G3A56_RS25490
location: complement(join(29948..30620,1..131))
location: region:1-30620:-1
so has part: feature:1-131:-1:exon
so has part: feature:29948-30620:-1:exon

WP_164056889.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-131:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:29948-30620:-1:exon

G3A56_RS25495
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25495
old locus tag: G3A56_25495
so part of: sequence
location: complement(118..324)
location: region:118-324:-1
so has part: feature:118-324:-1:exon
subclass of: SO_0000010

position:118:-1
position: 118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:324:-1
position: 324
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:118-324:-1:exon

G3A56_RS25495
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25495
old locus tag: G3A56_25495
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALTFLSPGSFDRTVTDWLIKLIVVVGLFIFIGNTGVISFGHMSFMAIGAYVSAWLTIAPMMKEDAPA
SIO_010081: G3A56_RS25495
subclass of: SO_0000673
so part of: G3A56_RS25495
location: complement(118..324)
location: region:118-324:-1
so has part: feature:118-324:-1:exon

WP_164056883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:118-324:-1:exon

G3A56_RS29080
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS29080
so part of: sequence
location: complement(850..1275)
location: region:850-1275:-1
so has part: feature:850-1275:-1:exon
subclass of: SO_0000010

position:850:-1
position: 850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1275:-1
position: 1275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:850-1275:-1:exon

G3A56_RS29080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS29080
inference: COORDINATES: protein motif:HMM:NF014684.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENLVQSLVDAISMGSLFALMALGIGLVFGIMRLVNFAHGELVMIGGYGLLLLSGAPDAIAAVLVIALVVLVALVMERCAFRPLRQRSTPTLLIGSFTVSFLLQNLVLMTIAPRLAASISDRHCCRASASARSLYLTYRSS
SIO_010081: G3A56_RS29080
subclass of: SO_0000673
so part of: G3A56_RS29080
location: complement(850..1275)
location: region:850-1275:-1
so has part: feature:850-1275:-1:exon

WP_246231449.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:850-1275:-1:exon

G3A56_RS25505
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25505
old locus tag: G3A56_25505
so part of: sequence
location: complement(1275..1994)
location: region:1275-1994:-1
so has part: feature:1275-1994:-1:exon
subclass of: SO_0000010

position:1994:-1
position: 1994
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1275-1994:-1:exon

G3A56_RS25505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25505
old locus tag: G3A56_25505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012190539.1
GO function: GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter ATP-binding protein
translation: MLEIRNLFVRYGSIVALRGISLDVSRGEIVSVVGPNGAGKSSLMLSLTGITRSEGEITLDGKSLSGLSPEAIAERGLSLVPEDRGIFSSLTVRENLSLGSTLPRARADFERRLDEVFELFPILKERLHGSAGKLSGGEQQQLAIGRALMSLPRLLLLDEPSLGLAPVVIDRVYDAITLLRQKGLSILVVEQNAERALSVSNRTFVLSTGSVVLSGPSAQLRDDPNFREAYFGNLTVEAI
SIO_010081: G3A56_RS25505
subclass of: SO_0000673
so part of: G3A56_RS25505
location: complement(1275..1994)
location: region:1275-1994:-1
so has part: feature:1275-1994:-1:exon

WP_113451771.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1275-1994:-1:exon

G3A56_RS25510
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25510
old locus tag: G3A56_25510
so part of: sequence
location: complement(1987..2409)
location: region:1987-2409:-1
so has part: feature:1987-2409:-1:exon
subclass of: SO_0000010

position:1987:-1
position: 1987
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2409:-1
position: 2409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1987-2409:-1:exon

G3A56_RS25510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25510
old locus tag: G3A56_25510
inference: COORDINATES: protein motif:HMM:NF012235.2
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding cassette domain-containing protein
translation: MDGASRKDAREQANAIMQWLDLASVADVAVTALPYGIERRVGIARAFAMQPRFLLLDEPAAGLTMGEADDLVKIILNVRDRIGCGVVIIEHNIRLIMKLCDRIQVLARGQTIAEGSAADIRANVVVTEAYLGRSVSKDHA
SIO_010081: G3A56_RS25510
subclass of: SO_0000673
so part of: G3A56_RS25510
location: complement(1987..2409)
location: region:1987-2409:-1
so has part: feature:1987-2409:-1:exon

WP_281357805.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1987-2409:-1:exon

G3A56_RS25520
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25520
old locus tag: G3A56_25520
so part of: sequence
location: complement(2792..3979)
location: region:2792-3979:-1
so has part: feature:2792-3979:-1:exon
subclass of: SO_0000010

position:2792:-1
position: 2792
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3979:-1
position: 3979
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2792-3979:-1:exon

G3A56_RS25520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25520
old locus tag: G3A56_25520
inference: COORDINATES: protein motif:HMM:NF024850.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ABC transporter substrate-binding protein
translation: MKNFGRNVLAVALASGTIASAASASAADSIVVGAAVARSGWMVQYDEGPLNAAQLAIEEINAKGGVLGRPLSLVVSDSKTDPAGSARAASEVLAQGAQLVIASCDFDYGAPAALTANAQKVVSFGTCAADPKFDAFAIGPYAFSMATATPGLGALSAEWAFKKAGWRTAYVMLDTMLDYNKSVCSSFTKVWTELAGTDSIIGSDTFNGNDMSYPAQISRLKNLPKQPDFVMFCSAGGGAVAMLRQIRSAGVETQILASDSMDGDNWLESVPKLSNFQYGAYGSLFGDDPNPKVREFVDKYTAKFGTKPISSQALTGYSVIQAYALAVERAKSLNADAVVAELEKFQAEPLLVGQTTFTKDRHINYDRGQLIMKVEDGKHKAVEWQVPTSVPNPFK
SIO_010081: G3A56_RS25520
subclass of: SO_0000673
so part of: G3A56_RS25520
location: complement(2792..3979)
location: region:2792-3979:-1
so has part: feature:2792-3979:-1:exon

WP_162762000.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2792-3979:-1:exon

G3A56_RS25525
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25525
old locus tag: G3A56_25525
so part of: sequence
location: 4803..5360
location: region:4803-5360:1
so has part: feature:4803-5360:1:exon
subclass of: SO_0000010

position:4803:1
position: 4803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5360:1
position: 5360
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4803-5360:1:exon

G3A56_RS25525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25525
old locus tag: G3A56_25525
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010220034.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYARVSTDDQTLDQQRAALKAIGCKRIFEEKVSGAKRDRPQLAALVNQLRDGDVVVVTRLDRLARSTRDLLDIAEQLEAAKAGLRSLAEPWADTTSPAGRMVLTIFAGIAEFERSLIHDRTSTGRAAAKAKGVRFGRPPALSVEQVNVARNLVNEGQSPRNVAKMLRVHPATLYRHLAEIAS
SIO_010081: G3A56_RS25525
subclass of: SO_0000673
so part of: G3A56_RS25525
location: 4803..5360
location: region:4803-5360:1
so has part: feature:4803-5360:1:exon

WP_113451768.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4803-5360:1:exon

G3A56_RS25530
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25530
old locus tag: G3A56_25530
pseudo: true
so part of: sequence
location: 5927..6636
location: region:5927-6636:1
so has part: feature:5927-6636:1:exon
subclass of: SO_0000010

position:5927:1
position: 5927
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6636:1
position: 6636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6636:1:exon

G3A56_RS25530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25530
old locus tag: G3A56_25530
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845952.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
SIO_010081: G3A56_RS25530
subclass of: SO_0000673
so part of: G3A56_RS25530
location: 5927..6636
location: region:5927-6636:1
so has part: feature:5927-6636:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:5927-6636:1:exon

G3A56_RS25535
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25535
old locus tag: G3A56_25535
so part of: sequence
location: 6916..7587
location: region:6916-7587:1
so has part: feature:6916-7587:1:exon
subclass of: SO_0000010

position:6916:1
position: 6916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7587:1
position: 7587
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6916-7587:1:exon

G3A56_RS25535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25535
old locus tag: G3A56_25535
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845951.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVISFVSSKGGVGKTTSAVVLAGEFAAAGRRVVLIDADPNRPLEAWARLKGTPDTVRLMIDDSAETIIDTIEEARANADFVIVDLEGTATDRIGFAIARSDLVLIPLQSSVLDASEAAKSVKLVHQMRKVANRDIPYRVFFTRVPPAIRERTARDIDRQFSDAAIPVLPATLIDRAAYRALFSLGGILRDLEASDVSGLQSAKENSREFAQAVINALRGEGA
SIO_010081: G3A56_RS25535
subclass of: SO_0000673
so part of: G3A56_RS25535
location: 6916..7587
location: region:6916-7587:1
so has part: feature:6916-7587:1:exon

WP_113451766.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6916-7587:1:exon

G3A56_RS25540
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25540
old locus tag: G3A56_25540
so part of: sequence
location: 7584..7922
location: region:7584-7922:1
so has part: feature:7584-7922:1:exon
subclass of: SO_0000010

position:7584:1
position: 7584
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7922:1
position: 7922
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7584-7922:1:exon

G3A56_RS25540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25540
old locus tag: G3A56_25540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012457146.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: stability/partitioning determinant
translation: MSTEDKKRATLDFGGLDNTPAPPVDNNAVKAATRAAGFRETPKAASSEAAPTIRAMRRTRRKTGRTEQFATRLRAETIEAIYNYADHHEITLAETIERAIEALEGRNEALEG
SIO_010081: G3A56_RS25540
subclass of: SO_0000673
so part of: G3A56_RS25540
location: 7584..7922
location: region:7584-7922:1
so has part: feature:7584-7922:1:exon

WP_164056885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7584-7922:1:exon

G3A56_RS25545
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25545
old locus tag: G3A56_25545
so part of: sequence
location: 7959..8333
location: region:7959-8333:1
so has part: feature:7959-8333:1:exon
subclass of: SO_0000010

position:7959:1
position: 7959
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8333:1
position: 8333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7959-8333:1:exon

G3A56_RS25545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25545
old locus tag: G3A56_25545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019200205.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MRVFKNGWFQKFARKEKISDAMLCEAIARAERGQIDADLGSGLIKQRLARPGAGKSGGFRTLVFFRTQQRAVFAFGFAKSNMANLDDADEAYLKKAAKLVLGFSDEQIDAEIAAGRMSEVKCDE
SIO_010081: G3A56_RS25545
subclass of: SO_0000673
so part of: G3A56_RS25545
location: 7959..8333
location: region:7959-8333:1
so has part: feature:7959-8333:1:exon

WP_113451765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7959-8333:1:exon

G3A56_RS25550
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25550
old locus tag: G3A56_25550
so part of: sequence
location: 8326..8643
location: region:8326-8643:1
so has part: feature:8326-8643:1:exon
subclass of: SO_0000010

position:8326:1
position: 8326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8643:1
position: 8643
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8326-8643:1:exon

G3A56_RS25550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25550
old locus tag: G3A56_25550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010969960.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding transcriptional regulator
translation: MSKTYKSEALAAVHEMMEGFYESGAIDKKTMREFDEGCLTTVASLTPEEIRSIRERESISQPVFARYLNVSKGLVSDWERGVKRPSGPALRLLTVVRNKGLQAIA
SIO_010081: G3A56_RS25550
subclass of: SO_0000673
so part of: G3A56_RS25550
location: 8326..8643
location: region:8326-8643:1
so has part: feature:8326-8643:1:exon

WP_164056886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8326-8643:1:exon

G3A56_RS29085
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS29085
so part of: sequence
location: complement(9339..10403)
location: region:9339-10403:-1
so has part: feature:9339-10403:-1:exon
subclass of: SO_0000010

position:9339:-1
position: 9339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10403:-1
position: 10403
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9339-10403:-1:exon

G3A56_RS29085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS29085
inference: COORDINATES: protein motif:HMM:NF013676.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transposase
translation: MRQLAWAHDWHIREEGYTAAHAILVNAQRQLPLASLWGDGTTSSSDGQYFPAGGHAEAIGDLNGRYGPNPGAKFYRFTSDQYGAFYIIAMNANASEAIYVLDGLLYHGSDLAIETHYVDTGGVSDMSFALCHLVGFQIVPRLRGLKDRKLYLFPGDTPPENLASLVGEHINVERIKANWNDILRLVTTIRSGQVRPSTLLAKLSAFPRQNGLALALRDLGRINRSIFLPQWWQNPEMRRNATAGLNKSESQNTLARALFFNRLGELRDRTFESQFYRASGLNLLINAIVYWNTLYLEPAFAELNREGIATPPDLVKHITPLGWQHISLTVDYIWTSTESLDLRPLRRETSILAA
SIO_010081: G3A56_RS29085
subclass of: SO_0000673
so part of: G3A56_RS29085
location: complement(9339..10403)
location: region:9339-10403:-1
so has part: feature:9339-10403:-1:exon

WP_246231450.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9339-10403:-1:exon

G3A56_RS29090
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS29090
pseudo: true
so part of: sequence
location: complement(<10469..10636)
location: region:10469-10636:-1
so has part: feature:10469-10636:-1:exon
subclass of: SO_0000010

position:10469:-1
position: 10469
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

position:10636:-1
position: 10636
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10469-10636:-1:exon

G3A56_RS29090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS29090
inference: COORDINATES: protein motif:HMM:NF013676.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: hypothetical protein
SIO_010081: G3A56_RS29090
subclass of: SO_0000673
so part of: G3A56_RS29090
location: complement(<10469..10636)
location: region:10469-10636:-1
so has part: feature:10469-10636:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10469-10636:-1:exon

G3A56_RS25560
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25560
old locus tag: G3A56_25560
so part of: sequence
location: complement(11677..12198)
location: region:11677-12198:-1
so has part: feature:11677-12198:-1:exon
subclass of: SO_0000010

position:11677:-1
position: 11677
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12198:-1
position: 12198
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11677-12198:-1:exon

G3A56_RS25560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25560
old locus tag: G3A56_25560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012654892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MKRVLIVGCPGAGKSTLAKELAEATRLPVVHLDRHYWQPGWQRPDSASWQKTVEKLAAQSEWIMDGNYSGTLEQRLASADTLIHLDYTTSLCLWRVIRRTVSGLGRNRGDQLAPGCPERFDWAFFRFVINYRKEQRQRDLARMEGFAGRVFRFTSPAELLGFVAAIKKAAQKA
SIO_010081: G3A56_RS25560
subclass of: SO_0000673
so part of: G3A56_RS25560
location: complement(11677..12198)
location: region:11677-12198:-1
so has part: feature:11677-12198:-1:exon

WP_082186265.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11677-12198:-1:exon

G3A56_RS25565
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25565
old locus tag: G3A56_25565
so part of: sequence
location: complement(12195..12824)
location: region:12195-12824:-1
so has part: feature:12195-12824:-1:exon
subclass of: SO_0000010

position:12195:-1
position: 12195
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12824:-1
position: 12824
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12195-12824:-1:exon

G3A56_RS25565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25565
old locus tag: G3A56_25565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012654893.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTALIGYARVSKADGSQVHDLQRDALAQAGVDANNVYEDAASGKKEDRPGLTACLKALRRGDTLVVWKLDRLGRDLRHLVNLVDDLTQRHIGLKVLAGEGASIDTSTANGRLVFGIFAALAEFERALIIERTKAGLAAARARGRNGGAPFKMTPAKLRLAQAAMGKPETKVADLCAELGITRQTLYRFVDPKGALRTDGERLLMRKAKK
SIO_010081: G3A56_RS25565
subclass of: SO_0000673
so part of: G3A56_RS25565
location: complement(12195..12824)
location: region:12195-12824:-1
so has part: feature:12195-12824:-1:exon

WP_082186264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12195-12824:-1:exon

G3A56_RS25570
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25570
old locus tag: G3A56_25570
pseudo: true
so part of: sequence
location: 12954..>15479
location: region:12954-15479:1
so has part: feature:12954-15479:1:exon
subclass of: SO_0000010

position:12954:1
position: 12954
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15479:1
position: 15479
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12954-15479:1:exon

G3A56_RS25570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25570
old locus tag: G3A56_25570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_043765841.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: Tn3 family transposase
SIO_010081: G3A56_RS25570
subclass of: SO_0000673
so part of: G3A56_RS25570
location: 12954..>15479
location: region:12954-15479:1
so has part: feature:12954-15479:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:12954-15479:1:exon

G3A56_RS25575
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25575
old locus tag: G3A56_25575
so part of: sequence
location: 15666..16271
location: region:15666-16271:1
so has part: feature:15666-16271:1:exon
subclass of: SO_0000010

position:15666:1
position: 15666
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16271:1
position: 16271
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16271:1:exon

G3A56_RS25575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25575
old locus tag: G3A56_25575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019087712.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MLIGYMRVSSSDERQSVALQRDALLAAGVDERHLHQDRASGARDDRPGLKACLGELREGDVLVVWKIDRLGRSLSHLIRIVEDLKERGVAFRSLTEAIDTTNSHGAFLFNLFGSLAEYERVLITERVNAGLAAARRRGRKGGRPPTIDAEKVEQVLAALEAGASKASVCRTFKVARSTLIDTLKRTGWTGPGKTGTPETVV
SIO_010081: G3A56_RS25575
subclass of: SO_0000673
so part of: G3A56_RS25575
location: 15666..16271
location: region:15666-16271:1
so has part: feature:15666-16271:1:exon

WP_003501158.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15666-16271:1:exon

G3A56_RS25580
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25580
old locus tag: G3A56_25580
so part of: sequence
location: 16288..19257
location: region:16288-19257:1
so has part: feature:16288-19257:1:exon
subclass of: SO_0000010

position:16288:1
position: 16288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19257:1
position: 19257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16288-19257:1:exon

G3A56_RS25580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25580
old locus tag: G3A56_25580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000008826.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MAFLDEQSRAVLFEPPEAYEDAQARYALTSEDIVFVKEHRRSHNRLGFAIQLALVRDLGRLLRIGEVPPQAVVSVVADQLGIDPAVFEFYAQRDETRREHAREIVSALELQPVRTSDYRELITAAAREAAATEQGAPIAKAVIEALKERKLLVPMPELLIRLALAGRAAARRQAYRELIRDLEQPSIEALDQLLAERAGDRSHLGWIAEAPEGAKLKNLKGLIARLEVLRSAAIPDDRRKTIHANRYGIIARDARILHAREIRRLTSERRYATLAAFVIERQASITDLTIDMFCKMIGSNRRKAEISRTERRLKEAEVLDGVALEHLKLGEALLAARASKTDLASAIAASLGWDGLVASMAAARSVVHPDRSNEFDELIKRHKSLRKLGRLMFRTFSFRSFRADDPILVAVDHLRALYGGRKLPAQVPLAFLTRKWRRCVRPNSADIDLRAWEVAVLVHLRERLRAGDIWVEGSRAWRSFEDYLLPRPIFELMRAEGRLGLALPDSFAEWRAERTATLDAKLKELAKAAAANAIPDAAISDKGLSISPIREEERDSIVALSRRLYVLVPRIRITSLLAEVQSWTKFLDSFTHYRTGETANDEAALMAAILADATNAGAERMAESSRGVTIHQMMLMVDRHMRSETYATATAVLVDAQQAHPFAAIWGDGHISSSDGQFFPAGGRGEASLDYNAKYGKRPGASIYGFLSNRFASFFSRMIQASEGEAPYVLDGLLHNESSVEIYEHATDTAGATETTFSMFHAFGYRLIPRIRNLGNRRLFVIDRDPAYEPLDALIAGTVNMDVVEHHWDEVLRLKASIAAGLVPPSVILKKLAASPRQNRLNQALREMGRIERSIFICDWLLDTKLRRRSHAILNKGESRHALARAIFLHQLGELRNRVAETMAYRASGLNLVVNAIILWNTVYLSRAVDYISSQGIIIPDELLSQVAPLPWAHIALTGDYLWNEIDRPLERFRPIRANRFNPNNFKFP
SIO_010081: G3A56_RS25580
subclass of: SO_0000673
so part of: G3A56_RS25580
location: 16288..19257
location: region:16288-19257:1
so has part: feature:16288-19257:1:exon

WP_003501156.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16288-19257:1:exon

G3A56_RS25585
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25585
old locus tag: G3A56_25585
so part of: sequence
location: complement(19292..19591)
location: region:19292-19591:-1
so has part: feature:19292-19591:-1:exon
subclass of: SO_0000010

position:19292:-1
position: 19292
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19591:-1
position: 19591
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19292-19591:-1:exon

G3A56_RS25585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25585
old locus tag: G3A56_25585
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845947.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: mobilization protein
translation: MARKTIEQRLAELDAQRSALKARLGKQERANDTRRKVLLGALVLHRLENAGDPEFTKRLADWLRRELPGFLTRDGDKALFADLLGAERPIMEGTPEKSA
SIO_010081: G3A56_RS25585
subclass of: SO_0000673
so part of: G3A56_RS25585
location: complement(19292..19591)
location: region:19292-19591:-1
so has part: feature:19292-19591:-1:exon

WP_113451759.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19292-19591:-1:exon

G3A56_RS25590
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25590
old locus tag: G3A56_25590
so part of: sequence
location: complement(19596..20060)
location: region:19596-20060:-1
so has part: feature:19596-20060:-1:exon
subclass of: SO_0000010

position:19596:-1
position: 19596
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20060:-1
position: 20060
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19596-20060:-1:exon

G3A56_RS25590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25590
old locus tag: G3A56_25590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013845945.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTERTYAKSAITQLKQASSRRPPWQLSMIGNTDEPVHLSVETVNALTRIFDLMPALGGVSIKTEHGDISASRNFPSGYMETVDALIGSVFKNDADITGIVFPATSTRPEHMATAENPHFLQSGKEIAAITASHEAGEMSSEEALRRIKDVYSEE
SIO_010081: G3A56_RS25590
subclass of: SO_0000673
so part of: G3A56_RS25590
location: complement(19596..20060)
location: region:19596-20060:-1
so has part: feature:19596-20060:-1:exon

WP_164056887.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19596-20060:-1:exon

G3A56_RS25595
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
gene: traA
locus tag: G3A56_RS25595
old locus tag: G3A56_25595
so part of: sequence
location: 20316..23861
location: region:20316-23861:1
so has part: feature:20316-23861:1:exon
subclass of: SO_0000010

position:20316:1
position: 20316
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23861:1
position: 23861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20316-23861:1:exon

G3A56_RS25595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
gene: traA
locus tag: G3A56_RS25595
old locus tag: G3A56_25595
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010399291.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Ti-type conjugative transfer relaxase TraA
translation: MAIYHLSAKPISRSSGRSAVASAAYRSAVKLTNERDGLVHDFTRKEGVQHTEIVLPEPGAGATGSAEWALDRSALWNAAEFAEKRKDARVAREFEVGLPHELSAEGRIEATRTFAQDLANRYGAAVDFAIHAPHEKGDVRNYHAHVLMTTRQVGEGGLGEKTYLEHKNARLLSNGMATTDMQLRDIRQSWESIANSQLQREGLDIRIDHRSHQERGLELSPTEHVGVHATQMQRQGMGVERARLDAEAAQKNADLIREKPEQVLTIISQEKSVFDRRDVARALHRYINDDAQTFQNAFASVMASPGLAELQPERIDPQTGEIELAKYSTREMVNLESGMARSAERMADDRSHGVDRRHVVGAIGRQDAAIQKASGDGAARLSDEQRQAIEHVTGPERISAVVGFAGAGKSTMLAAAREAWEAQGYRVHGAALSGKAAEGLEESSGIESRTLASWSHGWERDRGTLSRGDVFVIDEAGMVGSRQLSGFIGEAEKRGAKIVLVGDHEQLQAIGAGAPFRAIAERIGHAELSEIRRQHEGWQREASVSFATHKTADGLAAYRDHGDVHFAADGDAARAAIVQDYLADREDRPDGSRVAMAHRRVDVRAINDAIRSGLQERGELARVAPGGAGVDELSIGKGRGEERPRALTYQTNDGKRDFAEGDRIVFLENDRDLGVKNGMLGKVLSVEQDAIQVQLDGRTADRSDIINVPVNSYQAIDHGYATTIHKNQGATVDRAFVLASGTMDRHLTYVAMTRHRDGAQLYADSQEFTDKRAGRLVAHGVAPYEHKAGNRDSYFVTLENANGERSTTWGVDLGRAMAEASPEIGATIGLRHEGAVPVTLPDGTQTHRNGWRVQDVAELAYDQLESRLSRSGAKETTLDYARDFAERRGIAEAIGVRSEIDLGDAAIKGHEAPSLAGSTAGAVQDRSHSERSAYEERTPSQADPERMERAPRRGMFDGLKLKSGRGAAQAERPARDGERREDRGERDRLAERVRPMSGFEQAVDRYAQAYSSVDRQLSQDLPVLDAQKQAYRTAAADMDQVRPGSHALVRSAMHYDPHTADAMTQLSGRERVGQLVSGMDRERALQADPNVRADRFIERWNELRSERQELRGWNNDEARGKVDAEMRGMSQRLGGDPQLETTLRNRAQEMGISYIGRDQTISHEMERQLTQGRSQSMGLER
SIO_010081: G3A56_RS25595
subclass of: SO_0000673
so part of: G3A56_RS25595
location: 20316..23861
location: region:20316-23861:1
so has part: feature:20316-23861:1:exon

WP_164056888.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20316-23861:1:exon

G3A56_RS25600
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25600
old locus tag: G3A56_25600
so part of: sequence
location: 23876..24649
location: region:23876-24649:1
so has part: feature:23876-24649:1:exon
subclass of: SO_0000010

position:23876:1
position: 23876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24649:1
position: 24649
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23876-24649:1:exon

G3A56_RS25600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25600
old locus tag: G3A56_25600
inference: COORDINATES: protein motif:HMM:NF039997.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF6118 family protein
translation: MTDDDRNHHPEDMEPAAFHDEDDAGDPAAAFEALRDTVEDLAADLGREMTTIRKGVESAFDQLERQGAVVDYSAELGRMTQQLAIVGEHLQAIHQAPVLRQGAEHYARVLERSGDGLVRSAVQKLEQQSSDLERISSVLASHTKSALYRKDQDFRMWMMAGIGVVVGAFLLVVVPRFLPFSVDSRVAALVMGGDRVSAGRAMIQAADPQGGRDFVTAGWVYDTNREALDKCISDMFKTQKEQRCGLTLPVVQSSGHP
SIO_010081: G3A56_RS25600
subclass of: SO_0000673
so part of: G3A56_RS25600
location: 23876..24649
location: region:23876-24649:1
so has part: feature:23876-24649:1:exon

WP_246231448.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23876-24649:1:exon

G3A56_RS25605
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
gene: hydA
locus tag: G3A56_RS25605
old locus tag: G3A56_25605
so part of: sequence
location: complement(25103..26560)
location: region:25103-26560:-1
so has part: feature:25103-26560:-1:exon
subclass of: SO_0000010

position:25103:-1
position: 25103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:26560:-1
position: 26560
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25103-26560:-1:exon

G3A56_RS25605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
gene: hydA
locus tag: G3A56_RS25605
old locus tag: G3A56_25605
EC number: 3.5.2.2
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010658170.1
GO function: GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO process: GO:0008152 - metabolic process [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: dihydropyrimidinase
translation: MSTVIKGGTIIAADRTYKADIRIEGETIQAIAPDLSGDTVIDATDAYIMPGGIDPHTHFEMPFMGTTAAETWETGSFAALSGGTTTVLDFVIPGESGMLAALAEWESRAAHQTSCDYSYHMCVTGWSETHFDEMAKIVDLGINTFKHFMAYKGALMVNDDEMFASFQRCAALGALPLVHAENGDIIASLQQKLLGEGTTGPEGHAFSRPPEVEGEATNRAIMIADAAGVPVYIVHASSEQAHEAIRRARQKGMRVYGEPLIQHLTLDESEYFNQSWDYAAQRVMSPPFRDKSHQDGLWAGLAAGSLQVVATDHCAFTTEQKRFGLGNFAKIPNGTGGVEDRLSVLWTKGVETGRLTANEFVAVTSTNIAQILNIYPQKGAILPGSDADLVVWDPKLSKTISAANQKSIIDYNVFEGVEVRGLPRYTISRGEVVWADGQNSQAQPGRGKLIKRKPFPAVNAALSKWKEITAPRAVNRSPEHMPIGV
SIO_010081: G3A56_RS25605
subclass of: SO_0000673
so part of: G3A56_RS25605
location: complement(25103..26560)
location: region:25103-26560:-1
so has part: feature:25103-26560:-1:exon

WP_113451777.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25103-26560:-1:exon

G3A56_RS25610
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25610
old locus tag: G3A56_25610
so part of: sequence
location: complement(26602..27852)
location: region:26602-27852:-1
so has part: feature:26602-27852:-1:exon
subclass of: SO_0000010

position:26602:-1
position: 26602
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27852:-1
position: 27852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26602-27852:-1:exon

G3A56_RS25610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25610
old locus tag: G3A56_25610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009825998.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Zn-dependent hydrolase
translation: MASSADNLRVNPNRLWESLAAMAEIGPGLRGGNNRQTLTDADRDGRLLFQTLCEAAGCTVSVDAVGNMFARREGTDPEALPVMIGSHLDTQPTGGRYDGVLGVLAGLEIIRTLNEHDIRTSRPIEIVNWTNEEGSRFAPVMLGSGVFAGVHSVEWAYSRTDVDGLRMGDELARIGFLGTDPAGGHRPYAYLELHIEQGPILEDEGIDIGVVTHGQGLKWLQATLTGQEAHAGSTPMSRRRNAGLGAARIVELVEEIAWSHEPNGVGVVGQLSQQPNSRNVVPGKAVLTVDFRHPEGSVLADMEMRFRGGVERIATELGLGFEVETVGEFGPVAFDTDLLQRIRAAATSQGHTHRDIISGAGHDACWINRIAPTAMIFCPCVDGLSHNEDEAINCEWAANGANVLLRAALETAGFDG
SIO_010081: G3A56_RS25610
subclass of: SO_0000673
so part of: G3A56_RS25610
location: complement(26602..27852)
location: region:26602-27852:-1
so has part: feature:26602-27852:-1:exon

WP_113451776.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26602-27852:-1:exon

G3A56_RS25615
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25615
old locus tag: G3A56_25615
so part of: sequence
location: complement(27896..28759)
location: region:27896-28759:-1
so has part: feature:27896-28759:-1:exon
subclass of: SO_0000010

position:27896:-1
position: 27896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28759:-1
position: 28759
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27896-28759:-1:exon

G3A56_RS25615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25615
old locus tag: G3A56_25615
inference: COORDINATES: protein motif:HMM:NF013539.2
GO function: GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO process: GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MurR/RpiR family transcriptional regulator
translation: MVDADKSIEKRILAIYEEIPPGERALADLIMDQRSDFIGYTATELAQQAKVSKATAARLFKRLGYRSFEEARRIARNVNHWGSPLKQLEARGEAKVAPNVEEHLTTDQDNLRKTFERIGADQIEQSLDILARGPTIWILGLRNSFGLAHYARFILNMLREDVRLIPVGGLSFAEEVLNMKPGDGMLIIGFRRRPMALRAVMSKAQSIGVKTVYVTDISASRTAKLADVVFRCHSHGPYLYDSYTAALSVLNFLGTSLALHLGQAGIDRLNRIDELHDELDAFSHSKR
SIO_010081: G3A56_RS25615
subclass of: SO_0000673
so part of: G3A56_RS25615
location: complement(27896..28759)
location: region:27896-28759:-1
so has part: feature:27896-28759:-1:exon

WP_113451775.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27896-28759:-1:exon

G3A56_RS25620
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS25620
old locus tag: G3A56_25620
so part of: sequence
location: complement(28852..29811)
location: region:28852-29811:-1
so has part: feature:28852-29811:-1:exon
subclass of: SO_0000010

position:28852:-1
position: 28852
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:29811:-1
position: 29811
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28852-29811:-1:exon

G3A56_RS25620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS25620
old locus tag: G3A56_25620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013394161.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: N-carbamoyl-D-amino-acid hydrolase
translation: MTRFVNVAAAQMGPIAKSETRTQVVARLIALMREAKARGAELVVFPELALTTFFPRWLIDNEAELTQYYERAMPGPETQALFDEAHRLEIGFYLGYAELAQEDGRLRKFNTSILVDRRGVIIGKYRKVHLPGHSEPQAGRQHQHLEKRYFERGNTGFPVWRGFGGVMGMCLCNDRRWPETYRVMGLQGVEMVLLGYNTPFDHTGHDDIDALTSFHNHLSMQAGAYQNATWVVGTAKCGTEEGSKMLAQSVIVSPSGEIVSMASSIGDEVITAKADLDIGKRYRETIFDFARHREPESYKLIVERKGAMPPPLADEVSLG
SIO_010081: G3A56_RS25620
subclass of: SO_0000673
so part of: G3A56_RS25620
location: complement(28852..29811)
location: region:28852-29811:-1
so has part: feature:28852-29811:-1:exon

WP_113451774.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28852-29811:-1:exon