Rhizobium oryzihabitans strain M15 plasmid p2, complete sequence.
type: Entry
definition: Rhizobium oryzihabitans strain M15 plasmid p2, complete sequence.
sequence version: NZ_CP048634.1
sequence date: 2023-05-06
sequence: sequence
division: CON
label: NZ_CP048634.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN14048699
keyword: RefSeq
source: Rhizobium oryzihabitans
organism: Rhizobium oryzihabitans
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP048634.1.\nBacteria and source DNA available from Key Laboratory of Microbial\nResources Collection and Preservation.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: HGAP4 v. 2018-06; CANU v. 1.6\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 150.0x\nSequencing Technology :: Illumina miseq+Pacbio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/06/2023 02:03:37\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,749\nCDSs (total) :: 5,670\nGenes (coding) :: 5,255\nCDSs (with protein) :: 5,255\nGenes (RNA) :: 79\nrRNAs :: 6, 4, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 4, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 415\nCDSs (without protein) :: 415\nPseudo Genes (ambiguous residues) :: 0 of 415\nPseudo Genes (frameshifted) :: 352 of 415\nPseudo Genes (incomplete) :: 76 of 415\nPseudo Genes (internal stop) :: 8 of 415\nPseudo Genes (multiple problems) :: 21 of 415\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16358
topology: linear
so has quality: SO_0000987
location: 1..16358
location: region:1-16358:1
RO_0002162: 2267833

NZ_CP048634
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN14048699
type: BioSample
SIO_000068: biosample

1
title: Plant-Promoting Endophytic Bacterium Rhizobium oryzihabitans sp. nov., Isolated from the Root of Rice
author: zhao, J.
author: Zhang, G.
journal: Unpublished

2
title: Direct Submission
author: zhao, J.
author: Zhang, G.
journal: Submitted (06-FEB-2020) Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, zhongguancunnandajie, beijing, beijing 100081, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16358:1
position: 16358
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16358:1:source
so part of: sequence
organism: Rhizobium oryzihabitans
mol type: genomic DNA
strain: M15
isolation source: the root of rice
type material: type material of Rhizobium oryzihabitans
plasmid: p2
country: China
collection date: 2017
collected by: zhaojuanjuan
identified by: zhaojuanjuan

2267833
type: Taxonomy
SIO_000068: taxonomy

G3A56_RS29340
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
gene: repC
locus tag: G3A56_RS29340
old locus tag: G3A56_16760
pseudo: true
so part of: sequence
location: 502..1737
location: region:502-1737:1
so has part: feature:502-1737:1:exon
subclass of: SO_0000010

position:502:1
position: 502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1737:1
position: 1737
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:502-1737:1:exon

G3A56_RS29340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
gene: repC
locus tag: G3A56_RS29340
old locus tag: G3A56_16760
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012648911.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: plasmid replication protein RepC
SIO_010081: G3A56_RS29340
subclass of: SO_0000673
so part of: G3A56_RS29340
location: 502..1737
location: region:502-1737:1
so has part: feature:502-1737:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:502-1737:1:exon

G3A56_RS28590
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS28590
old locus tag: G3A56_16765
so part of: sequence
location: 1907..2083
location: region:1907-2083:1
so has part: feature:1907-2083:1:exon
subclass of: SO_0000010

position:1907:1
position: 1907
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2083:1
position: 2083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1907-2083:1:exon

G3A56_RS28590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS28590
old locus tag: G3A56_16765
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIRETMDIQLEYFPNLADRIARVRDMALEIEHLPDNTQAPIGSSLADVEWSSLPEEVS
SIO_010081: G3A56_RS28590
subclass of: SO_0000673
so part of: G3A56_RS28590
location: 1907..2083
location: region:1907-2083:1
so has part: feature:1907-2083:1:exon

WP_210255077.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1907-2083:1:exon

G3A56_RS16770
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16770
old locus tag: G3A56_16770
so part of: sequence
location: 2129..3094
location: region:2129-3094:1
so has part: feature:2129-3094:1:exon
subclass of: SO_0000010

position:2129:1
position: 2129
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3094:1
position: 3094
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2129-3094:1:exon

G3A56_RS16770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16770
old locus tag: G3A56_16770
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015341778.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMDDDKWAQTAETIETAIEKAVRQGRRRRAKREREVAKSRADAAGYEPGIVTFIDILGFRAMLGSRPASEIHDIILSLREFTTPEVEQFRRMKEVRLSSRAFAESISDAVVRIRVFDTQHSDGAFFQELLGLLHIQVQCINHGVLIRAGLAIGDVHVGLNGSGPVFGPAMVRAYEIESGEAIYPRIVVDDEAYEQFLSDARLRHEDHDLEEESGYVNGLLRTGEDGTLFIDYLGASESEFEVFEDYLALLERHANIIRQNLTASHRAAIRRKYLWLARYHNDIVSLVRLRFGSGDLSAENFLAVTGKDAAGVLDGLIVNY
SIO_010081: G3A56_RS16770
subclass of: SO_0000673
so part of: G3A56_RS16770
location: 2129..3094
location: region:2129-3094:1
so has part: feature:2129-3094:1:exon

WP_246231377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2129-3094:1:exon

G3A56_RS16775
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16775
old locus tag: G3A56_16775
so part of: sequence
location: 3531..3998
location: region:3531-3998:1
so has part: feature:3531-3998:1:exon
subclass of: SO_0000010

position:3531:1
position: 3531
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3998:1
position: 3998
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3531-3998:1:exon

G3A56_RS16775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16775
old locus tag: G3A56_16775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLRRATEDGYCILEIEIAPHTAEPFWLRQGFVLLDDEIHFRHGLHAFKTLPRAFSLGPGPRASVAIMFYDERAAYNEGEPFSTFEGKGERLADGSVQLPERVQGYSPLLRVNTDNHIRIIVDGSEIYSGRSKYGQAHGTRRDPAGHHYIDRVLPG
SIO_010081: G3A56_RS16775
subclass of: SO_0000673
so part of: G3A56_RS16775
location: 3531..3998
location: region:3531-3998:1
so has part: feature:3531-3998:1:exon

WP_164056731.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3531-3998:1:exon

G3A56_RS16780
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16780
old locus tag: G3A56_16780
pseudo: true
so part of: sequence
location: complement(4077..>4964)
location: region:4077-4964:-1
so has part: feature:4077-4964:-1:exon
subclass of: SO_0000010

position:4077:-1
position: 4077
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4964:-1
position: 4964
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4964:-1:exon

G3A56_RS16780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16780
old locus tag: G3A56_16780
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012760230.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: G3A56_RS16780
subclass of: SO_0000673
so part of: G3A56_RS16780
location: complement(4077..>4964)
location: region:4077-4964:-1
so has part: feature:4077-4964:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4077-4964:-1:exon

G3A56_RS16785
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16785
old locus tag: G3A56_16785
so part of: sequence
location: complement(5100..5744)
location: region:5100-5744:-1
so has part: feature:5100-5744:-1:exon
subclass of: SO_0000010

position:5100:-1
position: 5100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5744:-1
position: 5744
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5100-5744:-1:exon

G3A56_RS16785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16785
old locus tag: G3A56_16785
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011579009.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSHSLLKNHAGILLVGDYTSLTWLHEVVHDVNERSPIVKDKEGSFLGLAYDVRKAYERQREVIQPPKHIEEIGVRYGVQILWPVLMLQQRLLRQSLAFLNHTAKTQTIAYALEAVIEDALREDFGAQAGHIIDLWQRLDPAQPEVFEMIDSRGAIFSSWTKAQRKAGFAQLLSSFDPMYDRLYDIRLKNGEKNLISPGEFAAWENAEWPDPRW
SIO_010081: G3A56_RS16785
subclass of: SO_0000673
so part of: G3A56_RS16785
location: complement(5100..5744)
location: region:5100-5744:-1
so has part: feature:5100-5744:-1:exon

WP_164056732.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5100-5744:-1:exon

G3A56_RS16790
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16790
old locus tag: G3A56_16790
so part of: sequence
location: complement(5782..6204)
location: region:5782-6204:-1
so has part: feature:5782-6204:-1:exon
subclass of: SO_0000010

position:5782:-1
position: 5782
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6204:-1
position: 6204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5782-6204:-1:exon

G3A56_RS16790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16790
old locus tag: G3A56_16790
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007801540.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system VapC family toxin
translation: MRLLLDTNVLSEVTKPRPNEDVLKWLHGLDEDRTFISIVSIAEIRRGVALMDSGRKRDALDEWLAHDLPQRFESRILPVEGPVALAWGDLMALAKRSGRGLASMDGLIAATAVAYQLTLATRNTKDFEGFGIDIIDPWVD
SIO_010081: G3A56_RS16790
subclass of: SO_0000673
so part of: G3A56_RS16790
location: complement(5782..6204)
location: region:5782-6204:-1
so has part: feature:5782-6204:-1:exon

WP_164056733.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5782-6204:-1:exon

G3A56_RS16795
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16795
old locus tag: G3A56_16795
so part of: sequence
location: complement(6201..6467)
location: region:6201-6467:-1
so has part: feature:6201-6467:-1:exon
subclass of: SO_0000010

position:6201:-1
position: 6201
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6467:-1
position: 6467
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6201-6467:-1:exon

G3A56_RS16795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16795
old locus tag: G3A56_16795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012755578.1
GO component: GO:0110001 - toxin-antitoxin complex [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system Phd/YefM family antitoxin
translation: MQASTHDDMSWTVAGAKAKLSEVMERAQLAPQTITRNGKPSVVVVSAEEWQKKTARRGSLAEFLLASPLRGADLDIERQHDEPRDLSL
SIO_010081: G3A56_RS16795
subclass of: SO_0000673
so part of: G3A56_RS16795
location: complement(6201..6467)
location: region:6201-6467:-1
so has part: feature:6201-6467:-1:exon

WP_164056725.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6201-6467:-1:exon

G3A56_RS16800
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16800
old locus tag: G3A56_16800
pseudo: true
so part of: sequence
location: complement(6561..7693)
location: region:6561-7693:-1
so has part: feature:6561-7693:-1:exon
subclass of: SO_0000010

position:6561:-1
position: 6561
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7693:-1
position: 7693
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6561-7693:-1:exon

G3A56_RS16800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16800
old locus tag: G3A56_16800
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015341782.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: site-specific integrase
SIO_010081: G3A56_RS16800
subclass of: SO_0000673
so part of: G3A56_RS16800
location: complement(6561..7693)
location: region:6561-7693:-1
so has part: feature:6561-7693:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:6561-7693:-1:exon

G3A56_RS16805
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16805
old locus tag: G3A56_16805
pseudo: true
so part of: sequence
location: 7818..8770
location: region:7818-8770:1
so has part: feature:7818-8770:1:exon
subclass of: SO_0000010

position:7818:1
position: 7818
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8770:1
position: 8770
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7818-8770:1:exon

G3A56_RS16805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16805
old locus tag: G3A56_16805
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003501255.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: DUF1403 family protein
SIO_010081: G3A56_RS16805
subclass of: SO_0000673
so part of: G3A56_RS16805
location: 7818..8770
location: region:7818-8770:1
so has part: feature:7818-8770:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:7818-8770:1:exon

G3A56_RS16810
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16810
old locus tag: G3A56_16810
so part of: sequence
location: complement(8826..9578)
location: region:8826-9578:-1
so has part: feature:8826-9578:-1:exon
subclass of: SO_0000010

position:8826:-1
position: 8826
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9578:-1
position: 9578
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8826-9578:-1:exon

G3A56_RS16810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16810
old locus tag: G3A56_16810
inference: COORDINATES: similar to AA sequence:RefSeq:WP_011654541.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS6 family transposase
translation: MILNAIAEKLKRQSKDDFKGRHFEAWLIVQAVTWYLRYPLSYRDLEEMFRERGFEVDHSTINRWVLAYAPVIEKRLRQFRRPHCGSVRIDETYVKIRGKWRYLYRAIDKHGNPVDFLLTAKRDLDAAKRFFRKMLKDEPLLSPGKIGTDGANTFPSTIKTAIDDGLLHPSPVHYVTKHLQQGIESDHFRVKKNMPKIGCFQSFKTARRTIAGFEAMLWLRKGFGFSGDWTINDQNDLLGRLFGLQKVNKA
SIO_010081: G3A56_RS16810
subclass of: SO_0000673
so part of: G3A56_RS16810
location: complement(8826..9578)
location: region:8826-9578:-1
so has part: feature:8826-9578:-1:exon

WP_035228067.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8826-9578:-1:exon

G3A56_RS16815
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16815
old locus tag: G3A56_16815
so part of: sequence
location: complement(9623..10585)
location: region:9623-10585:-1
so has part: feature:9623-10585:-1:exon
subclass of: SO_0000010

position:9623:-1
position: 9623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10585:-1
position: 10585
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9623-10585:-1:exon

G3A56_RS16815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16815
old locus tag: G3A56_16815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDQNAKKWFDFGPGISLSLRQSGGRYLLRLELAHKPSPAAVEKAYEGRWAMIQSGNDGRPAIYEHMNDVRSLNDVVTRLEAFFDKGRIMGALSVTARAPTNIAPPARSSREVTDAVLNAFAADAPVPLLQHINRSIQHAYAVMGARAAAAKQLPFEGDAFGVYDRLVAKVGPLRAAETWGTVLLAVSTGRHGWQEKLDSLMEWDAGGREAQIAADTSIKAMVEAIAREVSVINATGLAEVDLASSLRGRLVEAAGERISYRAYDGAKFQPKGAPDLGPNTFTVQQGLSLDLATDAKARITQALSAAAKGACRKFFWLTSC
SIO_010081: G3A56_RS16815
subclass of: SO_0000673
so part of: G3A56_RS16815
location: complement(9623..10585)
location: region:9623-10585:-1
so has part: feature:9623-10585:-1:exon

WP_164056734.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9623-10585:-1:exon

G3A56_RS16820
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16820
old locus tag: G3A56_16820
so part of: sequence
location: complement(10592..11275)
location: region:10592-11275:-1
so has part: feature:10592-11275:-1:exon
subclass of: SO_0000010

position:10592:-1
position: 10592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11275:-1
position: 11275
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10592-11275:-1:exon

G3A56_RS16820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16820
old locus tag: G3A56_16820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVDAYSSVEDDDDAPSAAMIEKQAKDQVGFSDEDEIGEFERSERETSFEQPSVAATPKQEASPQVKRLSVEESTSLNITLKNAAYAAEKEAFIDGEPGGMPIGEYIARIGCDAIPPGRSVLWFKGDGPDSGLWLFVIAPKPKGAVQPGYRVTLAFGKEKAGEIQMEACALLQAQDKNGEKLKFDKCCLVKHDGTKFAPAGVINEQELVGRVSDIGFGINPFSFDER
SIO_010081: G3A56_RS16820
subclass of: SO_0000673
so part of: G3A56_RS16820
location: complement(10592..11275)
location: region:10592-11275:-1
so has part: feature:10592-11275:-1:exon

WP_130519741.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10592-11275:-1:exon

G3A56_RS16825
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16825
old locus tag: G3A56_16825
so part of: sequence
location: complement(11265..11690)
location: region:11265-11690:-1
so has part: feature:11265-11690:-1:exon
subclass of: SO_0000010

position:11265:-1
position: 11265
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11690:-1
position: 11690
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11265-11690:-1:exon

G3A56_RS16825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16825
old locus tag: G3A56_16825
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTGNKPAERADHNDSHEIATVDVDVAVPDSDGYFDDQDFEVGDGDIEITYEVDDPSRPSAARDIYVSELATAAKHEEARRKSDVQLNPDRMKAAINEALGRISRMPKMLYAAKQIQEAVERLADERLASSGSKHAESDYDG
SIO_010081: G3A56_RS16825
subclass of: SO_0000673
so part of: G3A56_RS16825
location: complement(11265..11690)
location: region:11265-11690:-1
so has part: feature:11265-11690:-1:exon

WP_130519743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11265-11690:-1:exon

G3A56_RS16830
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16830
old locus tag: G3A56_16830
so part of: sequence
location: complement(11687..12688)
location: region:11687-12688:-1
so has part: feature:11687-12688:-1:exon
subclass of: SO_0000010

position:11687:-1
position: 11687
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12688:-1
position: 12688
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11687-12688:-1:exon

G3A56_RS16830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16830
old locus tag: G3A56_16830
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKHKRFVLGSVVLGGSMLLGANSAAAAWCAISTGWIATHEQVEKHLIQETQILENDVAKAGSETLEQVLAALKVLNRQTSGEGQRLQQATKKSQEAYANTVTEQMRRERLVAIKENYSYETGQGPNACAQVAFLQKVTGAIDGTGSSTSRVYKQIDVSPGSVPSVAQQAADRRDPRSTDASLLLDVNASEEDKRKVIQQLAGFAVEKPTGNETGTVGGEFSMLRAREAEAWRSPALVSLAAVAAMSNKASGDGDGAGSVLQAMDALIDNYGGGPAYQKWTNALQMQSERGLMIELNRLRALSMRLRTYHSESEARKAAVVAGMLAAEAQGSN
SIO_010081: G3A56_RS16830
subclass of: SO_0000673
so part of: G3A56_RS16830
location: complement(11687..12688)
location: region:11687-12688:-1
so has part: feature:11687-12688:-1:exon

WP_130519745.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11687-12688:-1:exon

G3A56_RS16835
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16835
old locus tag: G3A56_16835
so part of: sequence
location: complement(12699..13712)
location: region:12699-13712:-1
so has part: feature:12699-13712:-1:exon
subclass of: SO_0000010

position:12699:-1
position: 12699
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13712:-1
position: 13712
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12699-13712:-1:exon

G3A56_RS16835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16835
old locus tag: G3A56_16835
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTVISKKKAAFYLAAITMAGISSPAFAVTCAVEAHVIQRTLQLDTAVTTQIVKSKTLLITEEMRQRQLLLAALKVLTKQESGSGQQTSTVVKKSAEAAASANVAQRQAYQIADAKERYGVTGYDSCGLQTKSQSFYAANMAMAGKAASYRNGTYFKPGQYGSPKDWASLAQSGSNFDAEAIFSGNSSAAAEYINFVAGPPIEKQAGGGVAGDLQTFEKNRNDVRRSVVVNVLSSIAAENEPGGPREKLAELMKHWTGDDGGVKWAQASADKPLRATLLDAVRIEAANIALMAFQVKDNARTELALSSYALSRVNRAVFNGNEGVVSVGAGQRRAGLQ
SIO_010081: G3A56_RS16835
subclass of: SO_0000673
so part of: G3A56_RS16835
location: complement(12699..13712)
location: region:12699-13712:-1
so has part: feature:12699-13712:-1:exon

WP_130519748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12699-13712:-1:exon

G3A56_RS16840
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16840
old locus tag: G3A56_16840
so part of: sequence
location: complement(13709..14464)
location: region:13709-14464:-1
so has part: feature:13709-14464:-1:exon
subclass of: SO_0000010

position:13709:-1
position: 13709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14464:-1
position: 14464
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13709-14464:-1:exon

G3A56_RS16840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16840
old locus tag: G3A56_16840
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRKAATALVIGIAFAGTTMPGAANATIMEWATSFERFMAGLKTVDRQVSSSASQTQHVIKKSEEAAVNAELAQEQALRMADIKNRYSYETGQGETSCAVVDARSGLSGVDNSEKKMLTAFRSSDQKYLSSGGNAAATIKNSLLKRIGHYCTDQERAALGPTYCQSTVRSERNAGDSNAAPFLVNRNYGGAEVVTAADYIDVLAPLPTIKPNAEVVGDRLELMNARMRGAALSASRSTMMGVAVSGMGGDMQ
SIO_010081: G3A56_RS16840
subclass of: SO_0000673
so part of: G3A56_RS16840
location: complement(13709..14464)
location: region:13709-14464:-1
so has part: feature:13709-14464:-1:exon

WP_130519750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13709-14464:-1:exon

G3A56_RS16845
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16845
old locus tag: G3A56_16845
so part of: sequence
location: complement(14477..15124)
location: region:14477-15124:-1
so has part: feature:14477-15124:-1:exon
subclass of: SO_0000010

position:14477:-1
position: 14477
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15124:-1
position: 15124
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14477-15124:-1:exon

G3A56_RS16845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16845
old locus tag: G3A56_16845
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRATTKATFAGLAVSAAIFAASPASAQGAGGCGITQAADAAVQRQIALLDAAKVDSSEFFNGANSCLGSNLLDSLDLSNLIPTSFDFLGGAADQLINGLIQKAQQQVCQVLNDQLQKVVGKINNNMYQFDSVMGGQMNELLGGSGNSVTELKLPSIPGIGKYDFTLASMSTGNGIDQPIMTPPAVQAGNNTVGNGTQPTGNTGNTSNPFGNLFQQ
SIO_010081: G3A56_RS16845
subclass of: SO_0000673
so part of: G3A56_RS16845
location: complement(14477..15124)
location: region:14477-15124:-1
so has part: feature:14477-15124:-1:exon

WP_130519752.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14477-15124:-1:exon

G3A56_RS16850
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16850
old locus tag: G3A56_16850
so part of: sequence
location: 15213..15377
location: region:15213-15377:1
so has part: feature:15213-15377:1:exon
subclass of: SO_0000010

position:15213:1
position: 15213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15377:1
position: 15377
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15213-15377:1:exon

G3A56_RS16850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16850
old locus tag: G3A56_16850
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIGTICRRLLETLAGAILDRERLVQVNEDGTFQRIYRQLSSAIGVCVLWHSLDL
SIO_010081: G3A56_RS16850
subclass of: SO_0000673
so part of: G3A56_RS16850
location: 15213..15377
location: region:15213-15377:1
so has part: feature:15213-15377:1:exon

WP_164056736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15213-15377:1:exon

G3A56_RS16855
type: Gene
subclass of: SO_0000704
RO_0002162: 2267833
locus tag: G3A56_RS16855
old locus tag: G3A56_16855
pseudo: true
so part of: sequence
location: complement(15499..>16358)
location: region:15499-16358:-1
so has part: feature:15499-16358:-1:exon
subclass of: SO_0000010

position:15499:-1
position: 15499
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16358:-1
position: 16358
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15499-16358:-1:exon

G3A56_RS16855
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267833
locus tag: G3A56_RS16855
old locus tag: G3A56_16855
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
pseudo: true
codon start: 3
transl table: 11
product: Rrf2 family transcriptional regulator
SIO_010081: G3A56_RS16855
subclass of: SO_0000673
so part of: G3A56_RS16855
location: complement(15499..>16358)
location: region:15499-16358:-1
so has part: feature:15499-16358:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:15499-16358:-1:exon