Bartonella krasnovii strain OE 1-1 plasmid pOE11-1, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
Bartonella kosoyi sp. nov. and Bartonella krasnovii sp. nov., two novel species closely related to the zoonotic Bartonella elizabethae, isolated from black rats and wild desert rodent-fleas
Submitted (14-JUL-2019) The Koret School of Veterinary Medicine, The Hebrew University of Jerusalem, Hertzl, Rehovot 76100, Israel
REFSEQ INFORMATION: The reference sequence is identical to\nCP042965.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2018\nAssembly Method :: UNICYCLER v. 2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: Illumina MiSeq and Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/06/2023 03:04:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,848\nCDSs (total) :: 1,796\nGenes (coding) :: 1,722\nCDSs (with protein) :: 1,722\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 46 of 74\nPseudo Genes (incomplete) :: 35 of 74\nPseudo Genes (internal stop) :: 34 of 74\nPseudo Genes (multiple problems) :: 31 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012230211.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015398973.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012230204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348023.1
COORDINATES: similar to AA sequence:RefSeq:WP_005774617.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012755128.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347973.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347974.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347975.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347976.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347977.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_010103400.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347979.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_007347980.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347981.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347984.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006590496.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398785.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007347988.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_007347989.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347990.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007347985.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348012.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398789.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347992.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347994.1
COORDINATES: similar to AA sequence:RefSeq:WP_007347995.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_007347996.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_005864545.1
COORDINATES: similar to AA sequence:RefSeq:WP_015398794.1