Bartonella krasnovii strain OE 1-1 plasmid pOE11-1, complete sequence.
type: Entry
definition: Bartonella krasnovii strain OE 1-1 plasmid pOE11-1, complete sequence.
sequence version: NZ_CP042965.1
sequence date: 2023-04-06
sequence: sequence
division: CON
label: NZ_CP042965.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08765112
keyword: RefSeq
source: Bartonella krasnovii
organism: Bartonella krasnovii
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella.
reference: 1
references: 32100689
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP042965.1.\n\nAnnotation modified by submitter.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: DEC-2018\nAssembly Method :: UNICYCLER v. 2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100X\nSequencing Technology :: Illumina MiSeq and Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/06/2023 03:04:21\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,848\nCDSs (total) :: 1,796\nGenes (coding) :: 1,722\nCDSs (with protein) :: 1,722\nGenes (RNA) :: 52\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 42\nncRNAs :: 4\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 46 of 74\nPseudo Genes (incomplete) :: 35 of 74\nPseudo Genes (internal stop) :: 34 of 74\nPseudo Genes (multiple problems) :: 31 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 29057
topology: circular
so has quality: SO_0000988
location: 1..29057
location: region:1-29057:1
RO_0002162: 2267275

NZ_CP042965
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08765112
type: BioSample
SIO_000068: biosample

1
title: Bartonella kosoyi sp. nov. and Bartonella krasnovii sp. nov., two novel species closely related to the zoonotic Bartonella elizabethae, isolated from black rats and wild desert rodent-fleas
author: Gutierrez, R.
author: Shalit, T.
author: Markus, B.
author: Yuan, C.
author: Nachum-Biala, Y.
author: Elad, D.
author: Harrus, S.
journal: Int J Syst Evol Microbiol
volume: 70
issue: 3
pages: 1656-1665
year: 2020
pubmed: 32100689

32100689
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Gutierrez, R.
author: Shalit, T.
author: Markus, B.
author: Harrus, S.
journal: Submitted (14-JUL-2019) The Koret School of Veterinary Medicine, The Hebrew University of Jerusalem, Hertzl, Rehovot 76100, Israel

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:29057:1
position: 29057
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-29057:1:source
so part of: sequence
organism: Bartonella krasnovii
mol type: genomic DNA
strain: OE 1-1
isolation source: Flea
type material: type strain of Bartonella krasnovii
plasmid: pOE11-1
country: Israel: Negev Desert
lat lon: 30.7141 N 34.8757 E
collection date: 2014

2267275
type: Taxonomy
SIO_000068: taxonomy

D1092_RS09225
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09225
old locus tag: D1092_09235
so part of: sequence
location: join(28718..29057,1..17)
location: region:1-29057:1
so has part: feature:28718-29057:1:exon
so has part: feature:1-17:1:exon
subclass of: SO_0000010

71062300
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:28718-29057:1:exon

position:28718:1
position: 28718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-17:1:exon

position:17:1
position: 17
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

D1092_RS09225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09225
old locus tag: D1092_09235
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNDLVLSTKDSEEQIITNVELIFDLKAAGIKVFLVLAWILRNRLIRMNTIVLDKAVLKMFLASQDKKLALSPTTFFRGISELEKAGIIAKQNHRGWYFINPDFLLDRKSIVFKNNFNE
SIO_010081: D1092_RS09225
subclass of: SO_0000673
so part of: D1092_RS09225
location: join(28718..29057,1..17)
location: region:1-29057:1
so has part: feature:28718-29057:1:exon
so has part: feature:1-17:1:exon

WP_241864380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28718-29057:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-17:1:exon

D1092_RS09230
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: repC
locus tag: D1092_RS09230
old locus tag: D1092_09240
so part of: sequence
location: 313..1686
location: region:313-1686:1
so has part: feature:313-1686:1:exon
subclass of: SO_0000010

71062301
type: Gene
SIO_000068: ncbigene

position:313:1
position: 313
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1686:1
position: 1686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:313-1686:1:exon

D1092_RS09230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: repC
locus tag: D1092_RS09230
old locus tag: D1092_09240
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012230211.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication protein RepC
translation: MVNKISGRKLSAHHIEYRKLAENAEMGSVSRGQLIGLVNQLEQTDFIKESEAKLLLNLLRTAPRDQFEKSGVPIVFKSNRQLSYDIKRSESRVSFLLSRLYDCGLIVMRDSGNFKRYPIRNHSDDIVTACGIDLRILVARYHELKHKADEALEVYDKKNEALHYFRGLVRQIKTCYTEMEATPFISLLFSRMQKIIYIIGRPAKVSLEKLYKAIRLFEWILRRFFEQKTSKTRYTDLVDKIHIEYTTPKYICNCNKNECSDHSEHTQINNMTSGHKKMAYEKIKKSKTESTLSSKNNKSLQIKSELLTEALPNVAMFLKHGLQSERDLIGSMEFLAKMNRISPHAVEEAKRNMGIKRAALAIAIIFEKYCRELVKSPGGYLRGMIAKENRGELYLERSFYVLLNEDSEEKLKVFCTKKAEKNEQIKPNDQKNSLLKSELKKVIKTLNMQTVSKKIVL
SIO_010081: D1092_RS09230
subclass of: SO_0000673
so part of: D1092_RS09230
location: 313..1686
location: region:313-1686:1
so has part: feature:313-1686:1:exon

WP_151030301.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:313-1686:1:exon

D1092_RS09235
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09235
old locus tag: D1092_09245
so part of: sequence
location: 1985..2629
location: region:1985-2629:1
so has part: feature:1985-2629:1:exon
subclass of: SO_0000010

71062302
type: Gene
SIO_000068: ncbigene

position:1985:1
position: 1985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2629:1
position: 2629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1985-2629:1:exon

D1092_RS09235
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09235
old locus tag: D1092_09245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398973.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MAKFYAYLRVSRDKQDIKNQKFGLLEYANKHGFAPLHIEEEVAGRGQDWQKRKLGALIEKTERGDVLLTPEFSRIAGSSLAVLEILKAASERGLIVHVTKQNLIMDGSLQSDIIATILGMVAQIERHLIQERTKEALNVARQRGIKLGRPKGSIATQLKLDNHIDEIQAFINVGLSQSRIAKTLGVSMNTLRLFIERRNIKPTKIKPIITMPKA
SIO_010081: D1092_RS09235
subclass of: SO_0000673
so part of: D1092_RS09235
location: 1985..2629
location: region:1985-2629:1
so has part: feature:1985-2629:1:exon

WP_151030302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1985-2629:1:exon

D1092_RS09240
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09240
old locus tag: D1092_09250
so part of: sequence
location: 2822..3490
location: region:2822-3490:1
so has part: feature:2822-3490:1:exon
subclass of: SO_0000010

71062303
type: Gene
SIO_000068: ncbigene

position:2822:1
position: 2822
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3490:1
position: 3490
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2822-3490:1:exon

D1092_RS09240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09240
old locus tag: D1092_09250
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012230204.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MPVITFANSKGGSGKTTSALLLACELAHAKPVTIIDADPRHPITTWSELPGRPDNLTVITNESEKTILDEIEIASARDPFVIVDLEGTASRLTSYAISQSDFVIVPMKEQQQDAIAAIEIIKEIHRDMKAVRRLIDYAVLFTQSKVVAKSRTARFISSQFRKNPELDVFETEINERDAFSAIFATGGSHRNLNPKEVNNLESAIGNVEAFVAEVIAKLKQVK
SIO_010081: D1092_RS09240
subclass of: SO_0000673
so part of: D1092_RS09240
location: 2822..3490
location: region:2822-3490:1
so has part: feature:2822-3490:1:exon

WP_151030303.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2822-3490:1:exon

D1092_RS09245
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09245
old locus tag: D1092_09255
so part of: sequence
location: 3506..3772
location: region:3506-3772:1
so has part: feature:3506-3772:1:exon
subclass of: SO_0000010

71062304
type: Gene
SIO_000068: ncbigene

position:3506:1
position: 3506
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3772:1
position: 3772
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3506-3772:1:exon

D1092_RS09245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09245
old locus tag: D1092_09255
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007348023.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSTERKPLNFSELEDFKPRQAKSSSNIVERKELDRAITFPSREQSDEAQINIKTSIAIINRFKSMAKRERYRHGDFLEILMNAYEQSD
SIO_010081: D1092_RS09245
subclass of: SO_0000673
so part of: D1092_RS09245
location: 3506..3772
location: region:3506-3772:1
so has part: feature:3506-3772:1:exon

WP_151030304.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3506-3772:1:exon

D1092_RS09250
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09250
old locus tag: D1092_09260
so part of: sequence
location: complement(3805..4161)
location: region:3805-4161:-1
so has part: feature:3805-4161:-1:exon
subclass of: SO_0000010

71062305
type: Gene
SIO_000068: ncbigene

position:3805:-1
position: 3805
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4161:-1
position: 4161
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3805-4161:-1:exon

D1092_RS09250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09250
old locus tag: D1092_09260
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005774617.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MQTKNQHLNDVSVGKKIRLRREMLKISQKQLGDLLGVTFQQIQKYEKATNRIGAGRLQEIADILDVDISFFYTDISPKKKFSYPNDEGISSKEEYFLLKGFRQLNPKKKRAILSLIAE
SIO_010081: D1092_RS09250
subclass of: SO_0000673
so part of: D1092_RS09250
location: complement(3805..4161)
location: region:3805-4161:-1
so has part: feature:3805-4161:-1:exon

WP_151030305.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3805-4161:-1:exon

D1092_RS09255
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09255
old locus tag: D1092_09265
so part of: sequence
location: 5021..5689
location: region:5021-5689:1
so has part: feature:5021-5689:1:exon
subclass of: SO_0000010

71062306
type: Gene
SIO_000068: ncbigene

position:5021:1
position: 5021
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5689:1
position: 5689
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5021-5689:1:exon

D1092_RS09255
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09255
old locus tag: D1092_09265
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012755128.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTISKKYEFTSETQQVGDHTLYRIRALRDFDNIKIGDLGGFIEKEDNLSHEGNCWVSDDAWVYGDGRVYENAIICDNAIVCGHVYGNAHVCDKSRVYTNACVYENARISYQAWVYNSARVYGHAKLSGSARIHRNAEVYDHAVVSGAAKIYGKVYGNASVGCHTDVYGSVYGNAKISGYFIIKGNVYGNANIKRRSRITLVPINCEVYESDNIVKTVAAAA
SIO_010081: D1092_RS09255
subclass of: SO_0000673
so part of: D1092_RS09255
location: 5021..5689
location: region:5021-5689:1
so has part: feature:5021-5689:1:exon

WP_174767390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5021-5689:1:exon

D1092_RS09260
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09260
old locus tag: D1092_09270
so part of: sequence
location: complement(5794..6264)
location: region:5794-6264:-1
so has part: feature:5794-6264:-1:exon
subclass of: SO_0000010

71062307
type: Gene
SIO_000068: ncbigene

position:5794:-1
position: 5794
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6264:-1
position: 6264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5794-6264:-1:exon

D1092_RS09260
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09260
old locus tag: D1092_09270
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347973.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSVDIDAIRQKITKEFNQLIPPNDPILMTVFLSDIMLDSALKTLHENQNQMINYILTARNAMVEEEKKTAGKLITEAATYINKEISEEINKNLNSISEQMRLYEISLSKMSTVKSNIDENTERFLKKIKNYGILIGASLLANVLCLFALIIHYYIN
SIO_010081: D1092_RS09260
subclass of: SO_0000673
so part of: D1092_RS09260
location: complement(5794..6264)
location: region:5794-6264:-1
so has part: feature:5794-6264:-1:exon

WP_151030306.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5794-6264:-1:exon

D1092_RS09265
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09265
old locus tag: D1092_09275
so part of: sequence
location: complement(6266..6991)
location: region:6266-6991:-1
so has part: feature:6266-6991:-1:exon
subclass of: SO_0000010

71062308
type: Gene
SIO_000068: ncbigene

position:6266:-1
position: 6266
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6991:-1
position: 6991
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6266-6991:-1:exon

D1092_RS09265
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09265
old locus tag: D1092_09275
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347974.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraL
translation: MTNIHMTLQGKGGVGKSFVASLVMQYLLENKIDVKGIDTDPINQTFASYKNFNVKHLKLLEDSDIIPRNFDLLMEELLNSNCQYVIDNGASTFLPLASYLKENEAFSLLATAKKNVIIHTIITGGQALKDTLSGLFSLCTQIPPTASIVVWKNEFFGYIIYEGKNFEEMKVFKENKERISAIVTIPRQTSTTFGEDIKTMLDKRLTFNEITNSNEFSIMAKSRLARVKSMLFNQIDNIPGI
SIO_010081: D1092_RS09265
subclass of: SO_0000673
so part of: D1092_RS09265
location: complement(6266..6991)
location: region:6266-6991:-1
so has part: feature:6266-6991:-1:exon

WP_151030307.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6266-6991:-1:exon

D1092_RS09270
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09270
old locus tag: D1092_09280
so part of: sequence
location: complement(6988..7299)
location: region:6988-7299:-1
so has part: feature:6988-7299:-1:exon
subclass of: SO_0000010

71062309
type: Gene
SIO_000068: ncbigene

position:6988:-1
position: 6988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7299:-1
position: 7299
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6988-7299:-1:exon

D1092_RS09270
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09270
old locus tag: D1092_09280
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347975.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraK family protein
translation: MKQKTKWGKMRIIFLANKDLILKSIEEGYSLKEILRRNPNLNISYDALASYVRKYFKKNVEITPPALSVKTQSKEPTSAKPIITQQKSRTFIHDTNKKLEDMI
SIO_010081: D1092_RS09270
subclass of: SO_0000673
so part of: D1092_RS09270
location: complement(6988..7299)
location: region:6988-7299:-1
so has part: feature:6988-7299:-1:exon

WP_151030308.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6988-7299:-1:exon

D1092_RS09275
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09275
old locus tag: D1092_09285
so part of: sequence
location: 7535..7864
location: region:7535-7864:1
so has part: feature:7535-7864:1:exon
subclass of: SO_0000010

71062310
type: Gene
SIO_000068: ncbigene

position:7535:1
position: 7535
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7864:1
position: 7864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7535-7864:1:exon

D1092_RS09275
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09275
old locus tag: D1092_09285
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347976.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TraJ
translation: MTRPRKFRLSVWCTFEEKETIEENARQTGLSISTYLRTVGQLEPVKTHIDYDVVKDLTKLQGDLGRVAGLLKLWLVTNNGKGGVPSDINQMMISFRELQKQIFEKVSTL
SIO_010081: D1092_RS09275
subclass of: SO_0000673
so part of: D1092_RS09275
location: 7535..7864
location: region:7535-7864:1
so has part: feature:7535-7864:1:exon

WP_151030309.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7535-7864:1:exon

D1092_RS09280
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09280
old locus tag: D1092_09290
so part of: sequence
location: 7861..9744
location: region:7861-9744:1
so has part: feature:7861-9744:1:exon
subclass of: SO_0000010

71062311
type: Gene
SIO_000068: ncbigene

position:7861:1
position: 7861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9744:1
position: 9744
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7861-9744:1:exon

D1092_RS09280
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09280
old locus tag: D1092_09290
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347977.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TraI/MobA(P) family conjugative relaxase
translation: MIAKRVERKKTTSNMARLARYIMDLDGGTLPRDWKLTSDYILDDNIQNSKKVASVRVTNCHTDDPVMATEFILKTQEQNKKSKSDKTYHLVLSFPDGEIPEKHTLYEIEDKFCSALGYENHQRISAIHKDTDNLHIHIAINKINPDSFRNYEPFFDKRTLMKTCQKIEQEYNLIKTPHGFECDIENIQYPKIKDFEYRTGVESLSTYVGKIAKELNYTNWLALHKSFADHGLVIKKRGSGLVIGAPDIDLWVKASSCNRTLSLRALEKKLGPYEDFKPIIQKQYVPTLHGKNSKTKTRLYSRYEEQKNASNLERRREYQILRTQKAIFYNQLFIWYKQQSYLLRFMPKSSRAGLRNTLKLQKSLRQQELRKKQAIAKRKLAETRFPNWFDWLHQQANIGDKDAIDVLHSMNERRAVLSDNLLTAKTARKTGILLQRNLKPSFLKNGNILYKSIDGGTIIDTGEKIHAQKFTTGSAYLALSLAIEKFKDQPLVLNGTEEFKKEVAQLAGIHNMNVNFDDPILNTLKNEVKQHNRDNIDNSLQEWIEERNKYTGNLPHVVWNGEESVFNYVGRRKIREKNFLLFEENQRIFVKETTKRGFIQAGYWKKGTKVKITKNSVKNISDKERET
SIO_010081: D1092_RS09280
subclass of: SO_0000673
so part of: D1092_RS09280
location: 7861..9744
location: region:7861-9744:1
so has part: feature:7861-9744:1:exon

WP_151030310.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7861-9744:1:exon

D1092_RS09285
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09285
old locus tag: D1092_09295
so part of: sequence
location: 9975..10583
location: region:9975-10583:1
so has part: feature:9975-10583:1:exon
subclass of: SO_0000010

71062312
type: Gene
SIO_000068: ncbigene

position:9975:1
position: 9975
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10583:1
position: 10583
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9975-10583:1:exon

D1092_RS09285
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09285
old locus tag: D1092_09295
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010103400.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretion system protein
translation: MERYGDYIKSANNWRLATFGMIIITAMSVGAFIWKSNEETIIPYIVQTNSVGEVTHLSKANVATKPNATHIRAALRNWIIGARTVYVDMRAEEDLINQTYSMTLPQSPAYAMLVEYHKQNDPYSRAAMETVEVQVNAIVPVSDDTWQIEWTEKKRARSGAIIDTKLWQATATVILAIPKTEKQIMVNPIGLYVKQFAWTPRL
SIO_010081: D1092_RS09285
subclass of: SO_0000673
so part of: D1092_RS09285
location: 9975..10583
location: region:9975-10583:1
so has part: feature:9975-10583:1:exon

WP_241864381.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9975-10583:1:exon

D1092_RS09290
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: trbG
locus tag: D1092_RS09290
old locus tag: D1092_09300
so part of: sequence
location: 10724..11500
location: region:10724-11500:1
so has part: feature:10724-11500:1:exon
subclass of: SO_0000010

71062313
type: Gene
SIO_000068: ncbigene

position:10724:1
position: 10724
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11500:1
position: 11500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10724-11500:1:exon

D1092_RS09290
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: trbG
locus tag: D1092_RS09290
old locus tag: D1092_09300
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347979.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbG
translation: MLTDKEAWGIKLANQWKNNPKRPIYSGDGSIKYLYGATLPTLVCTPLEVCTIQLQVGETINSLHAGDTVRWKISPTVSGSGTASTTYVVVKPIDAGLTTNLFITTDRRTYMIKLASTQSSSIPLLSFVYPDDTDQDWAAYKAATDKSRTTLPTGQNLAALDFNFRITISDRRIKWYPRRVYTDGFKTYIELPSDGVRGTAPALIAIGDDGGFLKKPSERLINYRMIGNRYVVDAVINKVALISGVGSSQQRVTIIRGR
SIO_010081: D1092_RS09290
subclass of: SO_0000673
so part of: D1092_RS09290
location: 10724..11500
location: region:10724-11500:1
so has part: feature:10724-11500:1:exon

WP_241864382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10724-11500:1:exon

D1092_RS09295
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09295
old locus tag: D1092_09305
so part of: sequence
location: 11502..11963
location: region:11502-11963:1
so has part: feature:11502-11963:1:exon
subclass of: SO_0000010

71062314
type: Gene
SIO_000068: ncbigene

position:11502:1
position: 11502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11963:1
position: 11963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11502-11963:1:exon

D1092_RS09295
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09295
old locus tag: D1092_09305
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347980.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLKYLLLLLLVLTAGCTSIGHRSSLLVNYVDQNITENDASLITSDFVRYLRDPFPPATTTFIVKTNDTEDKFTSLLVNLLQKNGYGVIYTDQPEKHKNQGINLTYKVMPLDQGIVLVAQYDLTEITRYYVRLKTGNIVPAAPFIARVDDGGKG
SIO_010081: D1092_RS09295
subclass of: SO_0000673
so part of: D1092_RS09295
location: 11502..11963
location: region:11502-11963:1
so has part: feature:11502-11963:1:exon

WP_151030313.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11502-11963:1:exon

D1092_RS09300
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09300
old locus tag: D1092_09310
so part of: sequence
location: 11960..13261
location: region:11960-13261:1
so has part: feature:11960-13261:1:exon
subclass of: SO_0000010

71062315
type: Gene
SIO_000068: ncbigene

position:11960:1
position: 11960
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13261:1
position: 13261
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11960-13261:1:exon

D1092_RS09300
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09300
old locus tag: D1092_09310
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347981.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbI/VirB10 family protein
translation: MKNNQKISPSESPDFFSTKTKGRGVRRLNNIPLIGAIGIIVFALVGITYTFMLRQQSNNVAVEDKKKLFIDETPLPIRPEGNDYVQATGPELPLLEPIKSTEIKQSAKADTNPEQKQLDKTVDEEDEIQKRLLTHIEERRLARMEAALDSDPTVSFTINSKVKNQSPIQDTYPQKATLENLFGRSGLSANSSLYNGDGGRDPNMQAQKIAFLSQSPEAEVYLKNTRQEAIKASLEIKAGTIIPSIMISGINSDLPGQIIAQVRESVYDSATGQNVLIPLGSRLIGTYDSRVSTGQKRALIAWSRVIYPDGSSLSLGNMPGTDQSGYAGFKDKVNNHYLKIFGNAFLLSVISGASQLSQKTHNKGNDDSTMATAKETLAAELGRQWGEVGIEMTRKNLDIQPTIIIRPGYNFNVMVTKDIILPAWQGHPMAALP
SIO_010081: D1092_RS09300
subclass of: SO_0000673
so part of: D1092_RS09300
location: 11960..13261
location: region:11960-13261:1
so has part: feature:11960-13261:1:exon

WP_151030314.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11960-13261:1:exon

D1092_RS09305
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09305
old locus tag: D1092_09315
pseudo: true
so part of: sequence
location: <13370..13876
location: region:13370-13876:1
so has part: feature:13370-13876:1:exon
subclass of: SO_0000010

71062316
type: Gene
SIO_000068: ncbigene

position:13370:1
position: 13370
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

position:13876:1
position: 13876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13370-13876:1:exon

D1092_RS09305
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09305
old locus tag: D1092_09315
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347984.1
GO function: GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: recombinase family protein
SIO_010081: D1092_RS09305
subclass of: SO_0000673
so part of: D1092_RS09305
location: <13370..13876
location: region:13370-13876:1
so has part: feature:13370-13876:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:13370-13876:1:exon

D1092_RS09310
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09310
old locus tag: D1092_09320
so part of: sequence
location: 13945..14250
location: region:13945-14250:1
so has part: feature:13945-14250:1:exon
subclass of: SO_0000010

71062317
type: Gene
SIO_000068: ncbigene

position:13945:1
position: 13945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14250:1
position: 14250
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13945-14250:1:exon

D1092_RS09310
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09310
old locus tag: D1092_09320
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006590496.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKKLPKSYMTDAECEELRAGGLGLDSIYLSEAEAAEQANDDQTVWEWLAMVELPAHTLLHLKHHNGAQFIRDMGFSTKNADEEYGPDWLDKGVVIGGHHF
SIO_010081: D1092_RS09310
subclass of: SO_0000673
so part of: D1092_RS09310
location: 13945..14250
location: region:13945-14250:1
so has part: feature:13945-14250:1:exon

WP_151030315.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13945-14250:1:exon

D1092_RS09315
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09315
old locus tag: D1092_09325
so part of: sequence
location: 14500..16446
location: region:14500-16446:1
so has part: feature:14500-16446:1:exon
subclass of: SO_0000010

71062318
type: Gene
SIO_000068: ncbigene

position:14500:1
position: 14500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16446:1
position: 16446
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14500-16446:1:exon

D1092_RS09315
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09315
old locus tag: D1092_09325
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398785.1
GO component: GO:0016020 - membrane [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV secretory system conjugative DNA transfer family protein
translation: MGGKLGNQSTHIPKRKSRLIFIFFFILYFIVLNQFCTQYLARIFHYSVVLGSNFKGVYSPFSWLFWIFKFYENAPTQCNIIFVIFCVGFLIGLIGFTLWAGLSSRSNKSTDDLHGTAHFATFNEIQEMGLIPHKQKGKGVYCGAFADPKTGMLHYLRHDGPEHIAALAPTRSGKGVGLVVPTLLSWPHSLFVLDTKGENYAMTAGWRKQCAGNKILRFDPAEPNVGCSWNPLGEIRFRTRYQVADAQNIALMVIDDDGKGIAGDHFRSAAFELLNGLILHALYKAEKTGRIPCLQDCAHMLTGVGDFAAVTEDNDDFDDDGDPKALSSLFHEMENLDIKSNNPSFKDADREAKLVINGVGRRMAGTPARELGSIISTANNALSLYRDPIVGENTKYCDFYISDLMDTETPVSLYFITTPRNLDRMRPLARLLLTQMVLSLSDRMEFDDGRSKTNHKHRLLLMLDEFPTLGKLEIFEKALAYIAGYGLKAYIITQDVQQLYKAYTTNESIISNCHIRIAYAPNKVETAEWMSKMAGETTVVREKISTSGKRFGMALEQVSTSYEETKRPLMTPDEIMRLPGAKKDNAGNIVEPGEMLIFVAGNSVIRGTQILYFLDPIFSERSKISPPVTDRLHQRNEIKKDQEGFVLS
SIO_010081: D1092_RS09315
subclass of: SO_0000673
so part of: D1092_RS09315
location: 14500..16446
location: region:14500-16446:1
so has part: feature:14500-16446:1:exon

WP_151030316.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14500-16446:1:exon

D1092_RS09320
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: traF
locus tag: D1092_RS09320
old locus tag: D1092_09330
so part of: sequence
location: 16455..16961
location: region:16455-16961:1
so has part: feature:16455-16961:1:exon
subclass of: SO_0000010

71062319
type: Gene
SIO_000068: ncbigene

position:16455:1
position: 16455
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16961:1
position: 16961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16455-16961:1:exon

D1092_RS09320
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: traF
locus tag: D1092_RS09320
old locus tag: D1092_09330
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347988.1
GO component: GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO function: GO:0008233 - peptidase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer signal peptidase TraF
translation: MSIITLCSLAIGCLILFALSQGFRINYSHSAPIGIWKVNYFQKEMRTGKFMEVCPPDVPIVKVFVEKGYLQSGACSSGAIPFLKPLVAVSGDVVQVTERGISINGYLLKNSQRNGGVAGVPNGEYHVAEGYAWFISSFDPVSFDSRYFGAVPITNIMGSAKPILTFQN
SIO_010081: D1092_RS09320
subclass of: SO_0000673
so part of: D1092_RS09320
location: 16455..16961
location: region:16455-16961:1
so has part: feature:16455-16961:1:exon

WP_241864378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16455-16961:1:exon

D1092_RS09325
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09325
old locus tag: D1092_09335
so part of: sequence
location: 16972..17148
location: region:16972-17148:1
so has part: feature:16972-17148:1:exon
subclass of: SO_0000010

71062320
type: Gene
SIO_000068: ncbigene

position:16972:1
position: 16972
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17148:1
position: 17148
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16972-17148:1:exon

D1092_RS09325
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09325
old locus tag: D1092_09335
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347989.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKTRVKVVPILSSAVNDAFIPGVQVPLSLEEAESYGVFSETALSEEDAWDSCATDFS
SIO_010081: D1092_RS09325
subclass of: SO_0000673
so part of: D1092_RS09325
location: 16972..17148
location: region:16972-17148:1
so has part: feature:16972-17148:1:exon

WP_015398787.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16972-17148:1:exon

D1092_RS09330
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09330
old locus tag: D1092_09340
so part of: sequence
location: 17184..19646
location: region:17184-19646:1
so has part: feature:17184-19646:1:exon
subclass of: SO_0000010

71062321
type: Gene
SIO_000068: ncbigene

position:17184:1
position: 17184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19646:1
position: 19646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17184-19646:1:exon

D1092_RS09330
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09330
old locus tag: D1092_09340
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: zincin-like metallopeptidase domain-containing protein
translation: MSFEYAKTVTDYFITQLQQGIAPWQQALPPGCARSPYNPQTGKKYSGINSLWLASQKYTDPRWLTYQQANEMGCRIKKGMKSTNIIYWKQDEKTYFYDEDGKKYETLKKLSEPRIFLAKVFNAEQIDGLPQLEPRPILSEEIRYARAEALLAASGAKIDSGDRKHAFYRGGDIDTLFLPETKQFDSKDSFYATALHELGHWTGHTSRLNRDMTYPTGSLGYAKEKLKTTIASFLIGEELSIGYDPVNNVSYVSSWIEVMQNNPKEIFRAAFEAEKIKNFIMGLETIKVIDVEKESSVSVDYDHKVDNTEKIFLDVPYSQKEEAKKLGAKWDKDAKSWYVPAGTNLVEKGLDCFSHDNSKSNTVLSVEQQFKEALHSAGLIVENPLMDGKLHRVSVENDKKHQKSGAYIGYPSPGGGYIQNFRRGEKIYWKPEKVISSLSLEEKKRLAVEVKERQEILQKEIVEKQNNTAMLASQIWKASKIATQDNAYCKLKGINQTSDLREVPDDFPEDIKKQGVRVAKSVEEAKIIKKSNPNIRTFLAGDLIIPLWDKDNNLSTLQMVNPTFKSFMKDGKKHECFTIVGSNNVGISALNNDLENPILIAEGYATASAVAQITHMPVVAAFDSGNLKNVGRVIRDKYPDRIILFVADNDHATQEKLLSNGKKGTNVGITAAYNAAVDVGGGVVYPEFKKEEKDFSDWDDYKRIHGNDKARNDFTSKMKIAEIEARVMSERLQTLANMQDQFAIDDPTTALDDQYVYEERDAANQLRQRAATLNGRNINLSDKAMISRVRSHILQDREQKLSQNPNTASYRERKNQENEI
SIO_010081: D1092_RS09330
subclass of: SO_0000673
so part of: D1092_RS09330
location: 17184..19646
location: region:17184-19646:1
so has part: feature:17184-19646:1:exon

WP_151030318.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17184-19646:1:exon

D1092_RS09335
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09335
old locus tag: D1092_09345
so part of: sequence
location: 19720..20025
location: region:19720-20025:1
so has part: feature:19720-20025:1:exon
subclass of: SO_0000010

71062322
type: Gene
SIO_000068: ncbigene

position:19720:1
position: 19720
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20025:1
position: 20025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19720-20025:1:exon

D1092_RS09335
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09335
old locus tag: D1092_09345
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347985.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKKLPKSYMTDAEREELRVGGLDQDCIYMVEAEAASKANDSKTTWEWLAMAEYPAHALLLLRHQRGPQFIRDMGFSTKNADEEYGPDWLDKGVVIGGHHF
SIO_010081: D1092_RS09335
subclass of: SO_0000673
so part of: D1092_RS09335
location: 19720..20025
location: region:19720-20025:1
so has part: feature:19720-20025:1:exon

WP_150222441.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19720-20025:1:exon

D1092_RS09340
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09340
old locus tag: D1092_09350
so part of: sequence
location: 20231..20566
location: region:20231-20566:1
so has part: feature:20231-20566:1:exon
subclass of: SO_0000010

71062323
type: Gene
SIO_000068: ncbigene

position:20231:1
position: 20231
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20566:1
position: 20566
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20231-20566:1:exon

D1092_RS09340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09340
old locus tag: D1092_09350
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007348012.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISSLKTALTEMDVVKKHVVLVSDPIQYKVINEAYSLSKNRKGGLPYDEARQAMASHYTRLGNLDKARLTSVEKSIIDVRRDNMKVMRKLYEKMQAKAIGIDLSRDKGHSL
SIO_010081: D1092_RS09340
subclass of: SO_0000673
so part of: D1092_RS09340
location: 20231..20566
location: region:20231-20566:1
so has part: feature:20231-20566:1:exon

WP_151030319.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20231-20566:1:exon

D1092_RS09345
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: trbB
locus tag: D1092_RS09345
old locus tag: D1092_09355
so part of: sequence
location: 20749..21723
location: region:20749-21723:1
so has part: feature:20749-21723:1:exon
subclass of: SO_0000010

71062324
type: Gene
SIO_000068: ncbigene

position:20749:1
position: 20749
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21723:1
position: 21723
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20749-21723:1:exon

D1092_RS09345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: trbB
locus tag: D1092_RS09345
old locus tag: D1092_09355
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer ATPase TrbB
translation: MAVTAFKGGRSSEQNRRLIEKMRFEFGQQVWDYLDDPTIIEIMLNPDGTLWVEHLGEPKKAVGVMDAHRAEAVMGTVATALGTQITKENPILECELPMNGSRFEAVIPPIVSAPTFTIRKKATKIFTLDDYVAKNIITPHQKSLLSEAVKNHKNILVVGGTGTGKTTLTNAILKEMTDTCPEERFVIIEDTAELQCAAPNTVTFRAVEYIDMTRLLKVTMRMAPDRIIVGEVRDGAALALLKSWNTGHPGGIATVHANDATAGLTRIQQLISEATIAPMQSLIAETIDVVLSIEKTSLGRKVKEIIEVCGYDHAINRYITNLIH
SIO_010081: D1092_RS09345
subclass of: SO_0000673
so part of: D1092_RS09345
location: 20749..21723
location: region:20749-21723:1
so has part: feature:20749-21723:1:exon

WP_151030320.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20749-21723:1:exon

D1092_RS09350
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09350
old locus tag: D1092_09360
so part of: sequence
location: 21735..22133
location: region:21735-22133:1
so has part: feature:21735-22133:1:exon
subclass of: SO_0000010

71062325
type: Gene
SIO_000068: ncbigene

position:21735:1
position: 21735
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22133:1
position: 22133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21735-22133:1:exon

D1092_RS09350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09350
old locus tag: D1092_09360
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347992.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TrbC/VirB2 family protein
translation: MQLSSTQTRNNLYNHIVLFFLIIGAVFFLYLILGDIAYASDATSGGGASLPWEAPMEKLRKSIAGPVAFGVSLLGLVAGGAALIFGGEISEFTKRIIYLVLVISVIVFANSLLTGALFSGAVVPSNVLVGGV
SIO_010081: D1092_RS09350
subclass of: SO_0000673
so part of: D1092_RS09350
location: 21735..22133
location: region:21735-22133:1
so has part: feature:21735-22133:1:exon

WP_151030321.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21735-22133:1:exon

D1092_RS09355
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: trbD
locus tag: D1092_RS09355
old locus tag: D1092_09365
so part of: sequence
location: 22133..22438
location: region:22133-22438:1
so has part: feature:22133-22438:1:exon
subclass of: SO_0000010

71062326
type: Gene
SIO_000068: ncbigene

position:22438:1
position: 22438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22133-22438:1:exon

D1092_RS09355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: trbD
locus tag: D1092_RS09355
old locus tag: D1092_09365
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347993.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugal transfer protein TrbD
translation: MGGKRYTQLFRSLHRPQQIMGGERELMLLSMLLTGILLVSAMNIIAATIGLCIWFVSLYVLRRMAKFDPILSRIYIRQLKYRSYYAPFSRPFRVAKSTRTY
SIO_010081: D1092_RS09355
subclass of: SO_0000673
so part of: D1092_RS09355
location: 22133..22438
location: region:22133-22438:1
so has part: feature:22133-22438:1:exon

WP_151030322.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22133-22438:1:exon

D1092_RS09360
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09360
old locus tag: D1092_09370
so part of: sequence
location: 22438..24942
location: region:22438-24942:1
so has part: feature:22438-24942:1:exon
subclass of: SO_0000010

71062327
type: Gene
SIO_000068: ncbigene

position:24942:1
position: 24942
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:22438-24942:1:exon

D1092_RS09360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09360
old locus tag: D1092_09370
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347994.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: transporter
translation: MLKLKPFRSTIAGLPDLLNFAALIDDGIILGKDGSLLAGFFIRGDDPMSATDIERNYITGLVNTYLSRFHSGWAIWVDAIRIESPSYSDPELSHFPDPITALIDAERRFYFKQSEVHYETEYALLMQYLPPTRKSSKLGEIVYEDDTVESTTPAERLLDEFKKKIDDFYIGIGDLLKMQRMKTITIKNGDEVYDSDQLVNYLHYAINGEAIALRIPDCPMYLDSWLGYTDLWPGDIPRLGDKFISCISIDGFPTASYPGILDILDGFPLHYRWSSRFIFMDQHEAVAALNKYRLKWQQKVRGFFSQVFKTNKGTINTDALLMAQQAETAMNEARSGIVAYGYYSPTIVLMHEDREVLAENARLIKREIEHKGFAARIETVNTMEAWLGTIAGQTYPNIRRPLINTQNLADMLPLSSVWPGLQINPCPLYPDNSPALSQVVTTGATPFRVNLHVDDVGHTLVFGPTGAGKSTLLAFLLAQARRYWSRATDKDGKHLPANITAFDKGRSLYALCYAIDGRHYDIGDSDSAVGALMPLADIDTEADNLWAQEWIAVCYELQTGQAPSPQQKMEIHRAMKQMSKTPKNMRSLSNFVTTIQNQEIRDALAHYTISGAMGHLLDGQEQFEDHNDFIVYEIDELMKLGDKNGLPVLLYLFRRFERSLKGQPSILSLDEAWIMLGHPVFREKIREWLKELRKKNCLVIMATQSLSDAVRSGILDVLLEQCPTKILLPNEEAETKGAEGAPGAVDLYRMIGLNDKEIQIIKTAKKKRQYYYKSILGRRLFELGLGDVALSFVAISSKEDLAEVKKLINEDAKNWPFKWLEMRGVNYEKYLEKI
SIO_010081: D1092_RS09360
subclass of: SO_0000673
so part of: D1092_RS09360
location: 22438..24942
location: region:22438-24942:1
so has part: feature:22438-24942:1:exon

WP_151030323.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:22438-24942:1:exon

D1092_RS09365
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: trbJ
locus tag: D1092_RS09365
old locus tag: D1092_09375
so part of: sequence
location: 24917..25672
location: region:24917-25672:1
so has part: feature:24917-25672:1:exon
subclass of: SO_0000010

71062328
type: Gene
SIO_000068: ncbigene

position:24917:1
position: 24917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25672:1
position: 25672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24917-25672:1:exon

D1092_RS09365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: trbJ
locus tag: D1092_RS09365
old locus tag: D1092_09375
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347995.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbJ
translation: MKNTLKKFKFLFLFSAFCSVNCCSMLYPTNAFAFFCANCATVWNQMSQYVEAVNTQINTAKQLQTQLQQYKDMVKQGLSFSSPQFDGLQSTLQKLKQVYQDSQSISYNMGNLNSRFEKMFPGYEDYLKNSGKMNPKKDYRKWAETGLSNSRVAIEAAGINTSSFDDEDKMMQKLVDRSASAEGRMQAIQAGNEIAAQQVKQLQLLRDLVANNTTLQANYTANEVERKAKNEAAAEKFFDEELTSTDRNHGF
SIO_010081: D1092_RS09365
subclass of: SO_0000673
so part of: D1092_RS09365
location: 24917..25672
location: region:24917-25672:1
so has part: feature:24917-25672:1:exon

WP_151030324.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24917-25672:1:exon

D1092_RS09370
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
gene: trbL
locus tag: D1092_RS09370
old locus tag: D1092_09380
so part of: sequence
location: 25662..27206
location: region:25662-27206:1
so has part: feature:25662-27206:1:exon
subclass of: SO_0000010

71062329
type: Gene
SIO_000068: ncbigene

position:25662:1
position: 25662
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:27206:1
position: 27206
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25662-27206:1:exon

D1092_RS09370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
gene: trbL
locus tag: D1092_RS09370
old locus tag: D1092_09380
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007347996.1
GO process: GO:0009291 - unidirectional conjugation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: P-type conjugative transfer protein TrbL
translation: MDFKKIKNYQVLSNKKIVFLLFFLLIIGCTIFADVSFAKSIDSTKSFNGLLDLIQKQSQSWYSKLHHYGFRLFWLLAALQFLFSFIPLLFKQSDIADFVGELVKFILVIGFFAALLEYSQEWGEAIVESFRTAAAHAGGRSRSLFPGVVLDESIKLAMAMINTSTWNPITAVLLALQAAVVFLCFGFIAVLLAVTIIESYIVINASVIFMGFGASQWTREISITTFRYAVAVGAKLFVITLLVTLISNSIMEWKKAYVYSDASNWTLLGLSLLCAYLTKTIPEIIAGLISGSSGGSGATIGAMAGAAVGAAASIAAIAATGGAAAPAAAGGASAAGGASAAGGASAAGGASAAGGGGASAAGGMGGGGSMMGPGSNVNASKMTGNSFKDSGSKPQSGGNPRVAGGENRSTSTSQPQAKSVSSDQSSVSPDQSKSPFFKMRDVADMTLKGTGHMAAFCIPGMEDASNLSLNAPPAPPEYNDIQFSSDNKSQSDEAKTSNMMENTISGAESIINKN
SIO_010081: D1092_RS09370
subclass of: SO_0000673
so part of: D1092_RS09370
location: 25662..27206
location: region:25662-27206:1
so has part: feature:25662-27206:1:exon

WP_241864379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25662-27206:1:exon

D1092_RS09590
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09590
so part of: sequence
location: complement(27297..27461)
location: region:27297-27461:-1
so has part: feature:27297-27461:-1:exon
subclass of: SO_0000010

71062363
type: Gene
SIO_000068: ncbigene

position:27297:-1
position: 27297
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27461:-1
position: 27461
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27297-27461:-1:exon

D1092_RS09590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09590
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005864545.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKNILLCIVMLAVGFSITGCGKTEEEKRKTQQEEQAKKFFDEELTSTDRDHGF
SIO_010081: D1092_RS09590
subclass of: SO_0000673
so part of: D1092_RS09590
location: complement(27297..27461)
location: region:27297-27461:-1
so has part: feature:27297-27461:-1:exon

WP_167309329.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27297-27461:-1:exon

D1092_RS09380
type: Gene
subclass of: SO_0000704
RO_0002162: 2267275
locus tag: D1092_RS09380
old locus tag: D1092_09390
so part of: sequence
location: complement(27925..28509)
location: region:27925-28509:-1
so has part: feature:27925-28509:-1:exon
subclass of: SO_0000010

71062330
type: Gene
SIO_000068: ncbigene

position:27925:-1
position: 27925
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:28509:-1
position: 28509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27925-28509:-1:exon

D1092_RS09380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2267275
locus tag: D1092_RS09380
old locus tag: D1092_09390
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015398794.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MDKINLRKQKFSPCENPFLKKSEIFADNKIVKTSITQQKFINTDTNRTEVIPTIHVTEKTNEKKFIEIFANGIQTVFNLSRTGHRVLIIVLEECQSNKTENKNNNSITLIWFDGGVNGKKHDMVDRTFHNGLRELIQKGILKPKLPNQYWINPILFFKGNKITFMKEYQIEPSSTKSDIPSNEYQTDLEDFTKI
SIO_010081: D1092_RS09380
subclass of: SO_0000673
so part of: D1092_RS09380
location: complement(27925..28509)
location: region:27925-28509:-1
so has part: feature:27925-28509:-1:exon

WP_151030325.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27925-28509:-1:exon