Runella rosea strain HYN0085 plasmid unnamed3, complete sequence.
Bacteria; Bacteroidota; Cytophagia; Cytophagales; Spirosomaceae; Runella.
Submitted (05-JUL-2018) College of Health Science, Korea University, Anam-ro 145, Seoul 02841, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP030853.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 221.79x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/05/2022 20:30:59\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,939\nCDSs (total) :: 5,885\nGenes (coding) :: 5,857\nCDSs (with protein) :: 5,857\nGenes (RNA) :: 54\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 43\nncRNAs :: 2\nPseudo Genes (total) :: 28\nCDSs (without protein) :: 28\nPseudo Genes (ambiguous residues) :: 0 of 28\nPseudo Genes (frameshifted) :: 12 of 28\nPseudo Genes (incomplete) :: 19 of 28\nPseudo Genes (internal stop) :: 2 of 28\nPseudo Genes (multiple problems) :: 4 of 28\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009280341.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020601305.1
RagB/SusD family nutrient uptake outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020601304.1
COORDINATES: protein motif:HMM:NF014567.2
hybrid sensor histidine kinase/response regulator transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_017714896.1
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009275587.1
SusD/RagB family nutrient-binding outer membrane lipoprotein
COORDINATES: protein motif:HMM:TIGR04056.1
GO:0045203 - integral component of cell outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071702 - organic substance transport [Evidence IEA]
SusC/RagA family TonB-linked outer membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020602383.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015026382.1
COORDINATES: similar to AA sequence:RefSeq:WP_015812692.1
COORDINATES: similar to AA sequence:RefSeq:WP_015812693.1
COORDINATES: similar to AA sequence:RefSeq:WP_014221990.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010601483.1
COORDINATES: similar to AA sequence:RefSeq:WP_015029105.1
COORDINATES: similar to AA sequence:RefSeq:WP_013764421.1
COORDINATES: similar to AA sequence:RefSeq:WP_008629382.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013926283.1
COORDINATES: similar to AA sequence:RefSeq:WP_015029111.1
COORDINATES: similar to AA sequence:RefSeq:WP_003002520.1
COORDINATES: similar to AA sequence:RefSeq:WP_003225220.1
SDR family NAD(P)-dependent oxidoreductase