Sulfitobacter indolifex strain DSM 14862 plasmid pDSM14862_g, complete sequence.
type: Entry
definition: Sulfitobacter indolifex strain DSM 14862 plasmid pDSM14862_g, complete sequence.
sequence version: NZ_CP084958.1
sequence date: 2023-04-15
sequence: sequence
division: CON
label: NZ_CP084958.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN22145276
keyword: RefSeq
source: Sulfitobacter indolifex
organism: Sulfitobacter indolifex
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP084958.1.\nAnnotated using Prokka 1.13 from\nhttps://github.com/tseemann/prokka.\nBacteria and source DNA available from Leibniz Institute DSMZ.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 SMRTPortal v. 2.3.0\nGenome Coverage :: 378x\nSequencing Technology :: PacBio RSII; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/15/2023 03:39:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,368\nCDSs (total) :: 4,303\nGenes (coding) :: 4,228\nCDSs (with protein) :: 4,228\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 38 of 75\nPseudo Genes (incomplete) :: 46 of 75\nPseudo Genes (internal stop) :: 27 of 75\nPseudo Genes (multiple problems) :: 29 of 75\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17291
topology: circular
so has quality: SO_0000988
location: 1..17291
location: region:1-17291:1
RO_0002162: 225422

NZ_CP084958
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN22145276
type: BioSample
SIO_000068: biosample

1
title: Beyond the ABCs#Discovery of Three New Plasmid Types in Rhodobacterales (RepQ, RepY, RepW)
author: Freese, H.M.
author: Ringel, V.
author: Overmann, J.
author: Petersen, J.
journal: Microorganisms 10 (4), 738 (2022)
comments: DOI: 10.3390/microorganisms10040738

2
title: Direct Submission
author: Freese, H.M.
author: Bunk, B.
journal: Submitted (08-OCT-2021) Microbial Ecology and Diversity, Leibniz Institute DSMZ, Inhoffenstr. 7 B, Braunschweig 38124, Germany

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17291:1
position: 17291
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17291:1:source
so part of: sequence
organism: Sulfitobacter indolifex
mol type: genomic DNA
strain: DSM 14862
isolation source: Seawater from the North Sea by Helgoland
culture collection: DSM:14862
type material: type strain of Sulfitobacter indolifex
plasmid: pDSM14862_g
country: Germany: North Sea around Helgoland
lat lon: 54.13333 N 7.86667 E
collection date: 1998-09-23

225422
type: Taxonomy
SIO_000068: taxonomy

DSM14862_RS21700
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21700
so part of: sequence
location: join(16349..17291,1..8)
location: region:1-17291:1
so has part: feature:16349-17291:1:exon
so has part: feature:1-8:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17291:1:exon

position:16349:1
position: 16349
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-8:1:exon

position:8:1
position: 8
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

DSM14862_RS21700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21700
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: helicase RepA family protein
translation: MENERAARDAIKAMQEYEVLEGVGHFFDADPLPLDFVLPGLLRKSVGVLVAAGSTGKSFLAVEACMTIAAGKDVFGLFGGGDITAGSVAYVALEDPLDVFWHRIHGIGKYLEENLSEDDYKLIRGGLDNIHLHSLYGRGYRPMKSDDLTASPHFKQTVERVKAQGARLVVVDTYSRFLAGHSESDNAIASTLVSILEQLCSEANCAVLVIHHTNKASQFSGEQGNQGAARGASALTDNARYQLNMWTMPQADAERYGVDDEERKRYVFAEATKANHMPPQGMRWLQRQAGGVLIGIDALDETPRGRLRRPGGEYDG
SIO_010081: DSM14862_RS21700
subclass of: SO_0000673
so part of: DSM14862_RS21700
location: join(16349..17291,1..8)
location: region:1-17291:1
so has part: feature:16349-17291:1:exon
so has part: feature:1-8:1:exon

WP_243254703.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16349-17291:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-8:1:exon

DSM14862_RS21705
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
gene: repC
locus tag: DSM14862_RS21705
old locus tag: DSM14862_04452
so part of: sequence
location: 1..870
location: region:1-870:1
so has part: feature:1-870:1:exon
subclass of: SO_0000010

position:870:1
position: 870
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-870:1:exon

DSM14862_RS21705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
gene: repC
locus tag: DSM14862_RS21705
old locus tag: DSM14862_04452
inference: COORDINATES: protein motif:HMM:NF018238.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication protein C, IncQ-type
translation: MADGKPLDKPSSRTLSFAQHDPATAMASLFRPVARGRRPTGLEITATWGKVEIEFGVHTAVDTRDQTILLTVMALAAGGPEISAASTGTIGQQLWLDLNEPGKVTFEGRSTVLETNLYTVLRESGLKLGGSAYDSVRKSLKRLSRIDLIVRDGDHGSRREFSQRFLSYYMDEKSGRITIALNTRLAEALVGHHVRVNLDERSALSTDAALIAHAWLSAWIRPGRSSRISLDGLIGKVWGEGDVSPPTFRKRRERLRAALNEIRQLQGWTIIEDERSVLQISRPALIERD
SIO_010081: DSM14862_RS21705
subclass of: SO_0000673
so part of: DSM14862_RS21705
location: 1..870
location: region:1-870:1
so has part: feature:1-870:1:exon

WP_243254704.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-870:1:exon

DSM14862_RS21710
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21710
old locus tag: DSM14862_04453
so part of: sequence
location: 1524..1976
location: region:1524-1976:1
so has part: feature:1524-1976:1:exon
subclass of: SO_0000010

position:1524:1
position: 1524
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1976:1
position: 1976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1524-1976:1:exon

DSM14862_RS21710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21710
old locus tag: DSM14862_04453
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKAIALAAVQDAIAAKHPGLSIDLIAQVHHIRPDEIAHIDVYGCNDTGTRRAIRAHAVRLLQQLGIQVDLVGGHDVHTVSPDYSDPVAVMLYRKQLDLIADIDAPIEPSASVLPPFRVPPDAEVEAELAEAMPLLRRMEAAIKDSDDDV
SIO_010081: DSM14862_RS21710
subclass of: SO_0000673
so part of: DSM14862_RS21710
location: 1524..1976
location: region:1524-1976:1
so has part: feature:1524-1976:1:exon

WP_243254705.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1524-1976:1:exon

DSM14862_RS21715
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21715
old locus tag: DSM14862_04454
so part of: sequence
location: 1963..2319
location: region:1963-2319:1
so has part: feature:1963-2319:1:exon
subclass of: SO_0000010

position:1963:1
position: 1963
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2319:1
position: 2319
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1963-2319:1:exon

DSM14862_RS21715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21715
old locus tag: DSM14862_04454
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTMSEMSNRHAAIHDDIELALLTDPTPAGWVYVNLDGITPRIIAHTEDKATYVAYTERLLAVLHSLHGDLRAVGHKSQHNTADFSDDQRAAARPALAARLADAGCSDDEIEQLIAPDD
SIO_010081: DSM14862_RS21715
subclass of: SO_0000673
so part of: DSM14862_RS21715
location: 1963..2319
location: region:1963-2319:1
so has part: feature:1963-2319:1:exon

WP_243254706.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1963-2319:1:exon

DSM14862_RS21720
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21720
old locus tag: DSM14862_04455
so part of: sequence
location: complement(3807..5237)
location: region:3807-5237:-1
so has part: feature:3807-5237:-1:exon
subclass of: SO_0000010

position:3807:-1
position: 3807
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5237:-1
position: 5237
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3807-5237:-1:exon

DSM14862_RS21720
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21720
old locus tag: DSM14862_04455
inference: COORDINATES: protein motif:HMM:NF024583.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MNYNTMALSGLSMPFSEFDFRFDKITSLASRLLGVPVSLLTVIDDAGGRQLLKSAVGVPDELQQSRATPLSHSFCKHVRDSRSTLLLTDAREHPLHMHNPAIEDYGVVSYLGVPFHGERGKPIGALCCSDQRPREWSEQDVELLIRLASIADDQFYLASAVRDRARAKLFAEKAARTRASFLSHANHEVRTPLSAISGAARLLSAISADDKARNLVEVIERNTSRLLALTEDLVRITELDTATASIAAESFDLINVIEDVVARNLKAARSKGIALTFNNQANANTIFLFDVAILTNVMEQLVSNAIKFTADGEVQVTVEATSQEDFVILRVSDTGLGIGPNLQSRLFDEFEGHDPQTAREGGGTGLGMNIIKREVDLLGGTLSLSSELGEGTHFTICLPTARSLVTDEQIEEDEQSDPRHITCLECGEELNVLRRHISQKHDMTPEAYRSKWGLPDDFELSSPAYRAMRRAVRNQK
SIO_010081: DSM14862_RS21720
subclass of: SO_0000673
so part of: DSM14862_RS21720
location: complement(3807..5237)
location: region:3807-5237:-1
so has part: feature:3807-5237:-1:exon

WP_237274046.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3807-5237:-1:exon

DSM14862_RS21725
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21725
old locus tag: DSM14862_04456
so part of: sequence
location: 5636..5869
location: region:5636-5869:1
so has part: feature:5636-5869:1:exon
subclass of: SO_0000010

position:5636:1
position: 5636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5869:1
position: 5869
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5636-5869:1:exon

DSM14862_RS21725
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21725
old locus tag: DSM14862_04456
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHTQNPEGRQTSAPHEVSMGSDRTSAHSRTDRHLNVVGVRLLPFANPELTFVHPAAVGGTEPCMDIGVFSEKYWLLG
SIO_010081: DSM14862_RS21725
subclass of: SO_0000673
so part of: DSM14862_RS21725
location: 5636..5869
location: region:5636-5869:1
so has part: feature:5636-5869:1:exon

WP_237274045.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5636-5869:1:exon

DSM14862_RS21730
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21730
old locus tag: DSM14862_04458
so part of: sequence
location: complement(7352..7606)
location: region:7352-7606:-1
so has part: feature:7352-7606:-1:exon
subclass of: SO_0000010

position:7352:-1
position: 7352
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7606:-1
position: 7606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7352-7606:-1:exon

DSM14862_RS21730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21730
old locus tag: DSM14862_04458
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSDLNVLRNTPAETLRSQYHMCQNCIRLIEKPADSCVCGADHYDICDCIDCMRSVHFLIDGEYHRTGVCFPIKSWTPDGGVVLR
SIO_010081: DSM14862_RS21730
subclass of: SO_0000673
so part of: DSM14862_RS21730
location: complement(7352..7606)
location: region:7352-7606:-1
so has part: feature:7352-7606:-1:exon

WP_243254707.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7352-7606:-1:exon

DSM14862_RS21735
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21735
old locus tag: DSM14862_04459
so part of: sequence
location: complement(7603..8577)
location: region:7603-8577:-1
so has part: feature:7603-8577:-1:exon
subclass of: SO_0000010

position:7603:-1
position: 7603
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8577:-1
position: 8577
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7603-8577:-1:exon

DSM14862_RS21735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21735
old locus tag: DSM14862_04459
inference: COORDINATES: protein motif:HMM:NF023168.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DNA-binding protein
translation: MARPRAATDAEIIEAAEALAEAKGWRTVYAKTVHEHMGVGGSLSTFSKVVTAWRAEKAEAEKGEDQPAEEIVEHRASILDEGLSTVFDALKSMREAVTNEIDRAVADERRKSDRMREDEREMHGKQVAGLEEAIAALTAESEGLATEAQDEAHRAETAEDALAEMTQTAEQRQDQIDALHRNVAKMADVEAQLKDEIAAKDDAAKKDAAAIDKAEKREAEAVAAKTKAEAKVDELREELKTVNSELTAARSDLTLARSERAAAQEALSSAAIENEELKKSIGIERSRAHDAWKRVDQIASEIKELRSAKPAAPKSATAKGAAKT
SIO_010081: DSM14862_RS21735
subclass of: SO_0000673
so part of: DSM14862_RS21735
location: complement(7603..8577)
location: region:7603-8577:-1
so has part: feature:7603-8577:-1:exon

WP_243254708.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7603-8577:-1:exon

DSM14862_RS21740
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21740
old locus tag: DSM14862_04460
so part of: sequence
location: 8843..9895
location: region:8843-9895:1
so has part: feature:8843-9895:1:exon
subclass of: SO_0000010

position:8843:1
position: 8843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9895:1
position: 9895
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8843-9895:1:exon

DSM14862_RS21740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21740
old locus tag: DSM14862_04460
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003750678.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: adenine-specific methyltransferase EcoRI family protein
translation: MAVKKDNQNSGLRGAQKAKKDEFYTRLEDIEKELRHYRDHFKGKVVLCNCDDPRVSNFFHYFSYGFEHLGLKKLITTCYKSRERDIFSECQDKTAISLVYNGDKNGNRVPDVDEIGVRPLKGDGDFRSDECEELLKTADIVVTNPPFSLFREYLAQLMAHEKKFLIIGNMNAVTYKEVFPLIRENKVWLGPSIRSGDRIFGVPDDYPLEAAGCGIDENGKKYIKVKSVRWFTNMDFAARHEDLILHRRYTPEDYPHFDNYDAINVDVTNDIPADYDGPMGVPITFLDKYNPEQFEILGITDRDNNSGLKTRVYTREDGPKYSDMNRRGAVRINGQLKPTYARVFIRKLKK
SIO_010081: DSM14862_RS21740
subclass of: SO_0000673
so part of: DSM14862_RS21740
location: 8843..9895
location: region:8843-9895:1
so has part: feature:8843-9895:1:exon

WP_243254695.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8843-9895:1:exon

DSM14862_RS21745
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21745
old locus tag: DSM14862_04461
so part of: sequence
location: 9892..10995
location: region:9892-10995:1
so has part: feature:9892-10995:1:exon
subclass of: SO_0000010

position:9892:1
position: 9892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10995:1
position: 10995
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9892-10995:1:exon

DSM14862_RS21745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21745
old locus tag: DSM14862_04461
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009149842.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF262 domain-containing protein
translation: MKIELKEITVRELSEGYSDNTEGGVIGYGGKLDIRPPFQREFVYKDAQRDAVIDTASKGFPLNVMYWSVRDNGEFEIIDGQQRTISLCQYVHGDFSVQIGSFKEKRAFHNLQDDERDRLLDYSLTVYLCSGTDTEKLEWFKTINIAGEQLTDQELRNAVYHGEWVTDAKKWFSRPNCPAQAVGSKYLNGSAIRQDYLETAIRWQAPEGDIEQYMSDHQREASAKELWDYFSDVMEWTQACFPKYRKQMKGVPWGPLYNEFGPQVIDAAKAEDEVTRLLIDDDVTNKSGIYSYVFDGRERHLNIRKFTEKDRVEAYERQGGVCRVCKKTFAIEEMEADHIDPWHEGGKTNALNCQMLCKEDNRRKSGI
SIO_010081: DSM14862_RS21745
subclass of: SO_0000673
so part of: DSM14862_RS21745
location: 9892..10995
location: region:9892-10995:1
so has part: feature:9892-10995:1:exon

WP_243254696.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9892-10995:1:exon

DSM14862_RS21750
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21750
old locus tag: DSM14862_04462
so part of: sequence
location: 11137..11343
location: region:11137-11343:1
so has part: feature:11137-11343:1:exon
subclass of: SO_0000010

position:11137:1
position: 11137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11343:1
position: 11343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11137-11343:1:exon

DSM14862_RS21750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21750
old locus tag: DSM14862_04462
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTAQDDRWRYLHSVIWDALRRGDDIPLDELPEHVQAYLAETGAARPIYNGVVHASAEDVLAALSQIND
SIO_010081: DSM14862_RS21750
subclass of: SO_0000673
so part of: DSM14862_RS21750
location: 11137..11343
location: region:11137-11343:1
so has part: feature:11137-11343:1:exon

WP_243254697.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11137-11343:1:exon

DSM14862_RS21755
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21755
old locus tag: DSM14862_04463
so part of: sequence
location: complement(11333..14017)
location: region:11333-14017:-1
so has part: feature:11333-14017:-1:exon
subclass of: SO_0000010

position:11333:-1
position: 11333
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14017:-1
position: 14017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11333-14017:-1:exon

DSM14862_RS21755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21755
old locus tag: DSM14862_04463
inference: COORDINATES: protein motif:HMM:NF015397.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
translation: MIGEAIKKQGEKGSGGGAEAFRPGVRYVCSKAARIEMRNIASSDWHDAADEMLLTSELNTRVQKPYYHLVLSWHEQEQPTDDQMFAAAEHMIQSLSLDEHQIVIGTHHDTARKHIHLVCNTVHPTTGKVWSKSNDHLRIEQACREIEIKQGWSHDRGRFDFDVGADGTVELKRNEEAWARKVADRESGKRPKSAGSRKAEKSTGFETFEAGIPDDLKARFGEAVGEAYDWQSLHDALGELGLSYYKAGSGARVGILGSSEYAKASAFGSKFSIAKIEKAFGAYEEPAQPYQNDLKEDHAEIGSLAGSVADENKQSVSASSFKITLLRRIYCDLYLDAQVSKSIRYVDLQDAPPQITFRDNSTVVDHGSKISTSKSTAETRAAMIAMAKAKGWSSVMPSGSPEFVHAAALQAAKAGLAVHGVPEDLQAQCDAIIERQEKAQRRIDMAARAAEKEALEGISERDQALADNDREHGEKAAYEAEATAEARAVVAALGSGRDPVRTALRTVAREEEQRIKSALPDRRTVSKPQPAPDADKGDGGKARRIKYQLRENSAHELEDMRAVHIDTIAAAGGWEYAPKHPDGHGDSKGEYRRTYTRGTADTIKCTRQGNIWLWVSNKSGESGSVVDLWLADNPGKTLGDARKAFREILATTPLPAVTATSSTPEEPKDHTHARRRWEEAPYIESQRTYAEDRGISKATLRRYRDQVRVGAFGGIYFAHRNTQTGDIQGFEQRWARSGEANTARFASGGIKTICVLGDPDTASRVVVFEGGLDALALAEIEGRDDTIYVSTGGGFGSKTEVALLALSEGKETLSGFDNDKGGQTLHKRLKVFLPTAQRLAPPSRVEGSKQLCKDWLDVLVVRKATPAMPSSPRAVEEGMDDLDEMRDQGQDFSH
SIO_010081: DSM14862_RS21755
subclass of: SO_0000673
so part of: DSM14862_RS21755
location: complement(11333..14017)
location: region:11333-14017:-1
so has part: feature:11333-14017:-1:exon

WP_243254698.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11333-14017:-1:exon

DSM14862_RS21760
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
gene: mobC
locus tag: DSM14862_RS21760
old locus tag: DSM14862_04464
so part of: sequence
location: complement(14014..14382)
location: region:14014-14382:-1
so has part: feature:14014-14382:-1:exon
subclass of: SO_0000010

position:14014:-1
position: 14014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14382:-1
position: 14382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14014-14382:-1:exon

DSM14862_RS21760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
gene: mobC
locus tag: DSM14862_RS21760
old locus tag: DSM14862_04464
inference: COORDINATES: protein motif:HMM:NF017524.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MARAGDGGERSSKRRRGHILSKRVDAGELAAFKSRARDAGFDDHRAYLSALILGKEGFEKQDRTALIRALGELGKHGSNLNQIAHSINSGKVSALSDTDIETIKSARASVEDVASQIKEILT
SIO_010081: DSM14862_RS21760
subclass of: SO_0000673
so part of: DSM14862_RS21760
location: complement(14014..14382)
location: region:14014-14382:-1
so has part: feature:14014-14382:-1:exon

WP_243254699.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14014-14382:-1:exon

DSM14862_RS21765
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21765
old locus tag: DSM14862_04465
so part of: sequence
location: complement(14488..15012)
location: region:14488-15012:-1
so has part: feature:14488-15012:-1:exon
subclass of: SO_0000010

position:14488:-1
position: 14488
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15012:-1
position: 15012
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14488-15012:-1:exon

DSM14862_RS21765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21765
old locus tag: DSM14862_04465
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSEFPEDLFAQLYRRAPSDKDRERLIAVKASLGLSPRDEMWPVIMTLDHYAVANQAARHTTVKEIRSVLDEIKAIPDAAGPIAAKEAQRTVSAMVDAAADKIAKVAAKKTESRSDTISRRQLITASIAGAVIACAVAALGAAATYLVLDARGICAEAPGLSSSGDVVCFVERSG
SIO_010081: DSM14862_RS21765
subclass of: SO_0000673
so part of: DSM14862_RS21765
location: complement(14488..15012)
location: region:14488-15012:-1
so has part: feature:14488-15012:-1:exon

WP_243254700.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14488-15012:-1:exon

DSM14862_RS21770
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21770
old locus tag: DSM14862_04466
so part of: sequence
location: complement(15005..15721)
location: region:15005-15721:-1
so has part: feature:15005-15721:-1:exon
subclass of: SO_0000010

position:15005:-1
position: 15005
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15721:-1
position: 15721
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15005-15721:-1:exon

DSM14862_RS21770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21770
old locus tag: DSM14862_04466
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKRIIFTHGDKGGVGKTQVATRTAAAFAAKNQSLQLVDGDAKNPGLYQSWHSSEHPVHRCNVLKIEGIEDLFEAIASADGDVLIDMPAGGSAATERFTGGGSEEGSIDLGMLLGEIDARAVVLFAVDQNREPIAALRDELQVFPVEHTDWIIVRNHYEDRPFTDFDASKTREAVLERGGKIIDMTRLDPAVTSLMSREGLNLISIQDSDKASMINKIRAKAALAGWIGQLKLAGVLDE
SIO_010081: DSM14862_RS21770
subclass of: SO_0000673
so part of: DSM14862_RS21770
location: complement(15005..15721)
location: region:15005-15721:-1
so has part: feature:15005-15721:-1:exon

WP_243254701.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15005-15721:-1:exon

DSM14862_RS21775
type: Gene
subclass of: SO_0000704
RO_0002162: 225422
locus tag: DSM14862_RS21775
old locus tag: DSM14862_04467
so part of: sequence
location: complement(15718..16116)
location: region:15718-16116:-1
so has part: feature:15718-16116:-1:exon
subclass of: SO_0000010

position:15718:-1
position: 15718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:16116:-1
position: 16116
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15718-16116:-1:exon

DSM14862_RS21775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 225422
locus tag: DSM14862_RS21775
old locus tag: DSM14862_04467
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSIESNKLKEAKAALKGMSSKRQVKLTKQQFVASLIEDIHAKMEAGFQMSEICEELNKTLPPDEQIKMSTFKAYVRAAREEAGIKPLKSWTRRTPRESKDSSEGKLEDNREVSDKKIQSTKTEGQFRNMVDL
SIO_010081: DSM14862_RS21775
subclass of: SO_0000673
so part of: DSM14862_RS21775
location: complement(15718..16116)
location: region:15718-16116:-1
so has part: feature:15718-16116:-1:exon

WP_243254702.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15718-16116:-1:exon