Sulfitobacter indolifex strain DSM 14862 plasmid pDSM14862_a, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Sulfitobacter.
Beyond the ABCs#Discovery of Three New Plasmid Types in Rhodobacterales (RepQ, RepY, RepW)
Submitted (08-OCT-2021) Microbial Ecology and Diversity, Leibniz Institute DSMZ, Inhoffenstr. 7 B, Braunschweig 38124, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP084952.1.\nAnnotated using Prokka 1.13 from\nhttps://github.com/tseemann/prokka.\nBacteria and source DNA available from Leibniz Institute DSMZ.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 SMRTPortal v. 2.3.0\nGenome Coverage :: 378x\nSequencing Technology :: PacBio RSII; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/15/2023 03:39:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,368\nCDSs (total) :: 4,303\nGenes (coding) :: 4,228\nCDSs (with protein) :: 4,228\nGenes (RNA) :: 65\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 4\nPseudo Genes (total) :: 75\nCDSs (without protein) :: 75\nPseudo Genes (ambiguous residues) :: 0 of 75\nPseudo Genes (frameshifted) :: 38 of 75\nPseudo Genes (incomplete) :: 46 of 75\nPseudo Genes (internal stop) :: 27 of 75\nPseudo Genes (multiple problems) :: 29 of 75\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Seawater from the North Sea by Helgoland
pDSM14862_a shares an identical region with plasmid #pDSM14862_b
COORDINATES: similar to AA sequence:RefSeq:WP_008030564.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009827218.1
COORDINATES: protein motif:HMM:NF015393.2
helix-turn-helix domain-containing protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009807854.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007121138.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007121139.1
GO:0051304 - chromosome separation [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008230107.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611724.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019439856.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
ABC transporter transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005851905.1
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005851907.1
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008225631.1
COORDINATES: similar to AA sequence:RefSeq:WP_009826229.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008225240.1
COORDINATES: similar to AA sequence:RefSeq:WP_013960264.1
COORDINATES: similar to AA sequence:RefSeq:WP_011301483.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]; GO:0003979 - UDP-glucose 6-dehydrogenase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008225362.1
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009826234.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005851921.1
COORDINATES: similar to AA sequence:RefSeq:WP_008227743.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014873546.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004210115.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007121443.1
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007121446.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558248.1
COORDINATES: similar to AA sequence:RefSeq:WP_006699171.1
COORDINATES: similar to AA sequence:RefSeq:WP_014878828.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121166.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121168.1
COORDINATES: protein motif:HMM:NF018684.2
COORDINATES: similar to AA sequence:RefSeq:WP_058245088.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007061175.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962587.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: protein motif:HMM:NF015431.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007104938.1
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013960880.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_007117821.1
COORDINATES: similar to AA sequence:RefSeq:WP_009572828.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121512.1
GO:0008830 - dTDP-4-dehydrorhamnose 3,5-epimerase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007121513.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281614.1
GO:0008831 - dTDP-4-dehydrorhamnose reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012187403.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_011453295.1
COORDINATES: similar to AA sequence:RefSeq:WP_003109846.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017270670.1
GO:0005283 - amino acid:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
alanine/glycine:cation symporter family protein
COORDINATES: protein motif:HMM:NF012935.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: similar to AA sequence:RefSeq:WP_010517587.1
COORDINATES: similar to AA sequence:RefSeq:WP_005852844.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120982.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120985.1
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018098980.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007120964.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827147.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121286.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF019371.2
COORDINATES: similar to AA sequence:RefSeq:WP_019560917.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012630.2
COORDINATES: similar to AA sequence:RefSeq:WP_002721020.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_015497842.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015497841.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015497840.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497839.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_015497838.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018208417.1
COORDINATES: similar to AA sequence:RefSeq:WP_007812060.1
COORDINATES: similar to AA sequence:RefSeq:WP_015497835.1
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: similar to AA sequence:RefSeq:WP_012187132.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316412.1
COORDINATES: similar to AA sequence:RefSeq:WP_008226934.1
COORDINATES: protein motif:HMM:NF016946.2
GO:0008488 - gamma-glutamyl carboxylase activity [Evidence IEA]
GO:0017187 - peptidyl-glutamic acid carboxylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012320288.1
DCC1-like thiol-disulfide oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008236790.1
COORDINATES: protein motif:HMM:NF020137.2
COORDINATES: similar to AA sequence:RefSeq:WP_007120896.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120894.1
COORDINATES: similar to AA sequence:RefSeq:WP_008555220.1
COORDINATES: protein motif:HMM:NF012422.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF028243.2
COORDINATES: similar to AA sequence:RefSeq:WP_011911013.1
COORDINATES: protein motif:HMM:NF014606.2
GO:0015159 - polysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015774 - polysaccharide transport [Evidence IEA]
polysaccharide biosynthesis/export family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005849294.1
COORDINATES: similar to AA sequence:RefSeq:WP_005849296.1
COORDINATES: protein motif:HMM:NF015500.2
COORDINATES: similar to AA sequence:RefSeq:WP_019140823.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_011910937.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012180204.1
COORDINATES: similar to AA sequence:RefSeq:WP_019566635.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536610.1
COORDINATES: similar to AA sequence:RefSeq:WP_013962845.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0015288 - porin activity [Evidence IEA]
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010111232.1
GO:0016159 - muconolactone delta-isomerase activity [Evidence IEA]
GO:0042952 - beta-ketoadipate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003807672.1
COORDINATES: similar to AA sequence:RefSeq:WP_012416013.1
COORDINATES: similar to AA sequence:RefSeq:WP_008646081.1
GO:0004061 - arylformamidase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009571015.1
3-keto-5-aminohexanoate cleavage protein
COORDINATES: similar to AA sequence:RefSeq:WP_007204121.1
GO:0047570 - 3-oxoadipate enol-lactonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002707828.1
COORDINATES: protein motif:HMM:NF016060.2
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009819617.1
COORDINATES: protein motif:HMM:NF015527.2
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011539263.1
GO:0003933 - GTP cyclohydrolase activity [Evidence IEA]
GO:0035998 - 7,8-dihydroneopterin 3'-triphosphate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009825258.1
COORDINATES: similar to AA sequence:RefSeq:WP_006728090.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: protein motif:HMM:NF017081.2
COORDINATES: similar to AA sequence:RefSeq:WP_008195887.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006833267.1
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF024792.2
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF019174.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
histidine kinase dimerization/phosphoacceptor domain -containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012410191.1
methanogen output domain 1-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007121187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008230009.1
COORDINATES: protein motif:HMM:NF017833.2
COORDINATES: similar to AA sequence:RefSeq:WP_009571565.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091748.1
COORDINATES: protein motif:HMM:NF025314.2
COORDINATES: similar to AA sequence:RefSeq:WP_007120942.1
COORDINATES: similar to AA sequence:RefSeq:WP_019895282.1
COORDINATES: protein motif:HMM:NF040107.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121247.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536621.1
COORDINATES: similar to AA sequence:RefSeq:WP_011536622.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011536611.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_011536612.1
COORDINATES: similar to AA sequence:RefSeq:WP_011390988.1
COORDINATES: similar to AA sequence:RefSeq:WP_011390987.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003535264.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_007119183.1
COORDINATES: similar to AA sequence:RefSeq:WP_008225102.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333985.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007253624.1
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018918104.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253626.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253627.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253628.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253629.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253630.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253631.1
COORDINATES: similar to AA sequence:RefSeq:WP_007253632.1
COORDINATES: protein motif:HMM:NF027567.2
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007119041.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138045.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121564.1
COORDINATES: similar to AA sequence:RefSeq:WP_005619765.1
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF022773.2
COORDINATES: similar to AA sequence:RefSeq:WP_005631280.1
COORDINATES: similar to AA sequence:RefSeq:WP_019564676.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179289.1
COORDINATES: similar to AA sequence:RefSeq:WP_007603980.1
COORDINATES: similar to AA sequence:RefSeq:WP_018235756.1
COORDINATES: similar to AA sequence:RefSeq:WP_009178669.1
COORDINATES: similar to AA sequence:RefSeq:WP_008028138.1
COORDINATES: similar to AA sequence:RefSeq:WP_005620025.1
COORDINATES: similar to AA sequence:RefSeq:WP_019294683.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007120413.1
COORDINATES: similar to AA sequence:RefSeq:WP_020040817.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121186.1
COORDINATES: protein motif:HMM:NF020965.2
COORDINATES: similar to AA sequence:RefSeq:WP_015497887.1
COORDINATES: similar to AA sequence:RefSeq:WP_016746819.1
COORDINATES: protein motif:HMM:NF015411.2
GO:0051287 - NAD binding [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011952501.1
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009540099.1
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_019963346.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006482547.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611976.1
COORDINATES: similar to AA sequence:RefSeq:WP_006202323.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009572952.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400569.1
GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015921564.1
sugar ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019996183.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018633997.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011569788.1
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF024799.2
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007198352.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009815999.1
COORDINATES: similar to AA sequence:RefSeq:WP_011910861.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007812581.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007594111.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611857.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015279984.1
COORDINATES: similar to AA sequence:RefSeq:WP_007257058.1
COORDINATES: similar to AA sequence:RefSeq:WP_020503606.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF012936.2
asparagine synthase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011588192.1
GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB
COORDINATES: similar to AA sequence:RefSeq:WP_010441445.1
COORDINATES: similar to AA sequence:RefSeq:WP_009670130.1
COORDINATES: similar to AA sequence:RefSeq:WP_020055355.1
GO:0003983 - UTP:glucose-1-phosphate uridylyltransferase activity [Evidence IEA]
GO:0009225 - nucleotide-sugar metabolic process [Evidence IEA]
UTP--glucose-1-phosphate uridylyltransferase GalU
COORDINATES: similar to AA sequence:RefSeq:WP_007195723.1
MarR family EPS-associated transcriptional regulator
COORDINATES: protein motif:HMM:NF012376.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009806847.1
COORDINATES: protein motif:HMM:NF014417.2
transcription termination/antitermination NusG family protein
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: similar to AA sequence:RefSeq:WP_009806850.1
GO:0045226 - extracellular polysaccharide biosynthetic process [Evidence IEA]
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_011746418.1
COORDINATES: similar to AA sequence:RefSeq:WP_028710025.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611293.1