Haloferax lucentense strain SVX82 plasmid pSVX82-3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.
Xylan utilization by haloarchaea-nanohaloarchaea associations
Submitted (09-SEP-2022) Marine Molecular Microbiology & Biotech, C.N.R. - Institute for Biological Resources and Marine Biotechnology (IRBIM), Spianata S. Raineri, 86, Messina 98122, Italy
REFSEQ INFORMATION: The reference sequence is identical to\nCP104744.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: SEP-2021\nAssembly Method :: Unicycler v. 0.4.9b; Geneious Prime v.\n 2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore MinION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/17/2023 08:25:29\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,829\nCDSs (total) :: 3,766\nGenes (coding) :: 3,724\nCDSs (with protein) :: 3,724\nGenes (RNA) :: 63\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 55\nncRNAs :: 2\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 17 of 42\nPseudo Genes (incomplete) :: 26 of 42\nPseudo Genes (internal stop) :: 8 of 42\nPseudo Genes (multiple problems) :: 8 of 42\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Razval and Ozero Dunino lakes, Sol-Iletsk region
COORDINATES: similar to AA sequence:RefSeq:WP_008443723.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_008015366.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094489.1
COORDINATES: similar to AA sequence:RefSeq:WP_012942228.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094484.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094677.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094471.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094671.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580609.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004046033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008322081.1
ADP-ribosylglycohydrolase family protein
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009486642.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0140658 - ATP-dependent chromatin remodeler activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008528519.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007143104.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_006183333.1
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: protein motif:HMM:NF016724.2
COORDINATES: protein motif:HMM:NF012600.2
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_004968205.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968207.1
COORDINATES: similar to AA sequence:RefSeq:WP_020222645.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608108.1
COORDINATES: similar to AA sequence:RefSeq:WP_007142733.1
COORDINATES: similar to AA sequence:RefSeq:WP_049955228.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004971416.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004968215.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004062240.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864302.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606465.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968219.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968220.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276466.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968222.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967626.1
COORDINATES: similar to AA sequence:RefSeq:WP_007276470.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_004597834.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035009.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606919.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014050600.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006630615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008573305.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968164.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043335.1
COORDINATES: similar to AA sequence:RefSeq:WP_007273887.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013440732.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF019380.2
COORDINATES: similar to AA sequence:RefSeq:WP_005044613.1
COORDINATES: similar to AA sequence:RefSeq:WP_007977507.1
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: similar to AA sequence:RefSeq:WP_004048913.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911601.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367710.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968193.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611240.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008607922.1
COORDINATES: protein motif:HMM:NF013704.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: similar to AA sequence:RefSeq:WP_021029740.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012659175.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971357.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094556.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111063.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008094552.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971365.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094550.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865899.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094549.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094544.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094542.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183468.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183564.1