Francisella marina strain E95-16 plasmid pE95_16_1, complete sequence.
type: Entry
definition: Francisella marina strain E95-16 plasmid pE95_16_1, complete sequence.
sequence version: NZ_CP043553.1
sequence date: 2023-05-05
sequence: sequence
division: CON
label: NZ_CP043553.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN12675351
keyword: RefSeq
source: Francisella marina
organism: Francisella marina
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP043553.1.\nBacteria and source DNA available from Esteban Soto.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Canu v. 1.8\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 76.0x\nSequencing Technology :: Illumina MiSeq; Oxford Nanopore GridION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/05/2023 04:19:18\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,026\nCDSs (total) :: 1,973\nGenes (coding) :: 1,965\nCDSs (with protein) :: 1,965\nGenes (RNA) :: 53\nrRNAs :: 4, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 3, 3 (5S, 16S, 23S)\ntRNAs :: 39\nncRNAs :: 4\nPseudo Genes (total) :: 8\nCDSs (without protein) :: 8\nPseudo Genes (ambiguous residues) :: 0 of 8\nPseudo Genes (frameshifted) :: 2 of 8\nPseudo Genes (incomplete) :: 5 of 8\nPseudo Genes (internal stop) :: 3 of 8\nPseudo Genes (multiple problems) :: 2 of 8\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4106
topology: circular
so has quality: SO_0000988
location: 1..4106
location: region:1-4106:1
RO_0002162: 2249302

NZ_CP043553
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN12675351
type: BioSample
SIO_000068: biosample

1
title: Complete genome sequence of Francisella marina E95-16
author: Tekedar, H.C.
author: Griffin, M.J.
author: Waldbieser, G.C.
author: Soto, E.
journal: Unpublished

2
title: Direct Submission
author: Tekedar, H.C.
author: Griffin, M.J.
author: Waldbieser, G.C.
author: Soto, E.
journal: Submitted (03-SEP-2019) Department of Medicine & Epidemiology School of Veterinary Medicine, University of California-Davis, 2108 Tupper Hall, Davis, CA 95616-5270, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4106:1
position: 4106
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4106:1:source
so part of: sequence
organism: Francisella marina
mol type: genomic DNA
strain: E95-16
host: Lutjanus guttatus (Rose snapper)
type material: type strain of Francisella marina
plasmid: pE95_16_1
country: Costa Rica:Puntarenas
collection date: 2016

2249302
type: Taxonomy
SIO_000068: taxonomy

F0R75_RS10180
type: Gene
subclass of: SO_0000704
RO_0002162: 2249302
locus tag: F0R75_RS10180
so part of: sequence
location: complement(join(4051..4106,1..100))
location: region:1-4106:-1
so has part: feature:1-100:-1:exon
so has part: feature:4051-4106:-1:exon
subclass of: SO_0000010

position:1:-1
position: 1
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4106:-1
position: 4106
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-100:-1:exon

position:100:-1
position: 100
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:4051-4106:-1:exon

position:4051:-1
position: 4051
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

F0R75_RS10180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2249302
locus tag: F0R75_RS10180
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKLRWKEDCKKCKCEKCVPVRIFQVKAKCSKCGSKQYTGWADFLGSIFTSG
SIO_010081: F0R75_RS10180
subclass of: SO_0000673
so part of: F0R75_RS10180
location: complement(join(4051..4106,1..100))
location: region:1-4106:-1
so has part: feature:1-100:-1:exon
so has part: feature:4051-4106:-1:exon

WP_187986026.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-100:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:4051-4106:-1:exon

F0R75_RS10080
type: Gene
subclass of: SO_0000704
RO_0002162: 2249302
locus tag: F0R75_RS10080
old locus tag: F0R75_10080
so part of: sequence
location: complement(110..709)
location: region:110-709:-1
so has part: feature:110-709:-1:exon
subclass of: SO_0000010

position:110:-1
position: 110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:709:-1
position: 709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:110-709:-1:exon

F0R75_RS10080
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2249302
locus tag: F0R75_RS10080
old locus tag: F0R75_10080
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MFLEEYWEAIKNPTNAIQGMGNRNLALIYYAIYTGMKAVTSDEALQEEMKRSASKIRNLLSYSLKSPNFSKLLKLYETKYPGFKGGWNSSKIINNEIIFRKGKLSKNDLNYFQKQGVKQSINIGTEPHAIFGALLRAEINGKLSNNSEIAKYQIAYIIVTGESNLYNFVRYDVSANSKLDGSNWHPILQTTKNLAYLKS
SIO_010081: F0R75_RS10080
subclass of: SO_0000673
so part of: F0R75_RS10080
location: complement(110..709)
location: region:110-709:-1
so has part: feature:110-709:-1:exon

WP_149369234.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:110-709:-1:exon

F0R75_RS10085
type: Gene
subclass of: SO_0000704
RO_0002162: 2249302
locus tag: F0R75_RS10085
old locus tag: F0R75_10085
so part of: sequence
location: complement(718..1614)
location: region:718-1614:-1
so has part: feature:718-1614:-1:exon
subclass of: SO_0000010

position:718:-1
position: 718
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1614:-1
position: 1614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:718-1614:-1:exon

F0R75_RS10085
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2249302
locus tag: F0R75_RS10085
old locus tag: F0R75_10085
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012274923.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006260 - DNA replication [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: protein rep
translation: MSENQKKQHITKLKNSQLDIQRLFSFDLKKQKRICDCGRYVQFNKYEHIFTGEVKKKVEQSFLCEYRYCPLCNYYRICSVSPQMQKVLEEQQQKGNKILFLTLTIPNCQYSDLRQKISLMNKAFKRLTRLDFFNNVEAWIRTTEVTFNTKNEAHPHFHIALAVNENYFKKGNYKTTREWSKLWTNAYKSDKQLIVDIRKAYKSKKHSSRDLDIQSTVKELAKYCIKSTDLKRVKTPGNMEEIFNQLKGLRFIATSQNIKLSEDSNDKLNLHEWDLIESIIMKYYPDMRKYLEFKKIAK
SIO_010081: F0R75_RS10085
subclass of: SO_0000673
so part of: F0R75_RS10085
location: complement(718..1614)
location: region:718-1614:-1
so has part: feature:718-1614:-1:exon

WP_149377302.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:718-1614:-1:exon

F0R75_RS10090
type: Gene
subclass of: SO_0000704
RO_0002162: 2249302
locus tag: F0R75_RS10090
old locus tag: F0R75_10090
so part of: sequence
location: complement(2927..3202)
location: region:2927-3202:-1
so has part: feature:2927-3202:-1:exon
subclass of: SO_0000010

position:2927:-1
position: 2927
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3202:-1
position: 3202
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2927-3202:-1:exon

F0R75_RS10090
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2249302
locus tag: F0R75_RS10090
old locus tag: F0R75_10090
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012274925.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKQFDLFGGFSKPKKSKVKVRNQGRPKTITPEIVFETKKLLSSKKKLSNNEIMQILQISKSTFYRIKKGDYDDLFEQFLKTSIKTFSLEQE
SIO_010081: F0R75_RS10090
subclass of: SO_0000673
so part of: F0R75_RS10090
location: complement(2927..3202)
location: region:2927-3202:-1
so has part: feature:2927-3202:-1:exon

WP_149369231.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2927-3202:-1:exon

F0R75_RS10095
type: Gene
subclass of: SO_0000704
RO_0002162: 2249302
locus tag: F0R75_RS10095
old locus tag: F0R75_10095
so part of: sequence
location: 3345..3854
location: region:3345-3854:1
so has part: feature:3345-3854:1:exon
subclass of: SO_0000010

position:3345:1
position: 3345
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3345-3854:1:exon

F0R75_RS10095
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2249302
locus tag: F0R75_RS10095
old locus tag: F0R75_10095
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPSYVQASMDSIGELFLYCGSKKTAGSNSYLETGGGENFSIVAEYGWEMSPNSAASLENVSFSLSLTIPAYDSAVSMVFNAVNQRDKVTKLVLNDVTKRYGKCAIQATYTAENGQITHVSFHKHSAVYNSENKMNCAIGSMTILFKFEKMSFDDNQNQTSGNIKTTDGG
SIO_010081: F0R75_RS10095
subclass of: SO_0000673
so part of: F0R75_RS10095
location: 3345..3854
location: region:3345-3854:1
so has part: feature:3345-3854:1:exon

WP_149369232.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3345-3854:1:exon