Halobacterium salinarum strain 91-R6 plasmid pHSAL2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T) and the laboratory strains R1 and NRC-1
The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
Microbiol Resour Announc 8 (28), e00429-19 (2019)
Submitted (01-APR-2019) Computational Biology Group, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, Martinsried 82152, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP038633.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 12-JUL-2018\nAssembly Method :: RS_HGAP_assembly.2 v. 2.3.0; Canu v. 1.7;\n Geneious v. 10.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 19:51:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,582\nCDSs (total) :: 2,529\nGenes (coding) :: 2,480\nCDSs (with protein) :: 2,480\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 19 of 49\nPseudo Genes (incomplete) :: 41 of 49\nPseudo Genes (internal stop) :: 4 of 49\nPseudo Genes (multiple problems) :: 14 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
IS4-like element ISH5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012289756.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592009.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007276015.1
COORDINATES: similar to AA sequence:RefSeq:WP_010902762.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890462.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_004516850.1
COORDINATES: similar to AA sequence:RefSeq:WP_008416050.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890469.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010890471.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890472.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890473.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890475.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289604.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890477.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890478.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890479.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015763696.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890512.1
IS4-like element ISH8A family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_006183382.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611207.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007538655.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004591960.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319143.1
COORDINATES: similar to AA sequence:RefSeq:WP_004591963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051572.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014051571.1
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: similar to AA sequence:RefSeq:WP_008528513.1
COORDINATES: similar to AA sequence:RefSeq:WP_004050867.1
COORDINATES: similar to AA sequence:RefSeq:WP_007993908.1
COORDINATES: similar to AA sequence:RefSeq:WP_006826453.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: similar to AA sequence:RefSeq:WP_004599390.1
COORDINATES: protein motif:HMM:NF018357.2
COORDINATES: similar to AA sequence:RefSeq:WP_008584142.1
COORDINATES: similar to AA sequence:RefSeq:WP_008606786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289254.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289608.1
IS4-like element ISH32 family transposase
COORDINATES: protein motif:HMM:NF024573.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008015529.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344011.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006168495.1
FaeA/PapI family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006180988.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571232.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308665.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890413.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_004592214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109540.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458109.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214920.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321229.1
COORDINATES: protein motif:HMM:NF037531.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289545.1
ISH3-like element ISH3B family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541606.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289077.1
IS5-like element ISH1A family transposase