Halobacterium salinarum strain 91-R6 plasmid pHSAL1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754T) and the laboratory strains R1 and NRC-1
The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1
Microbiol Resour Announc 8 (28), e00429-19 (2019)
Submitted (01-APR-2019) Computational Biology Group, Max-Planck-Institute of Biochemistry, Am Klopferspitz 18, Martinsried 82152, Germany
REFSEQ INFORMATION: The reference sequence is identical to\nCP038632.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 12-JUL-2018\nAssembly Method :: RS_HGAP_assembly.2 v. 2.3.0; Canu v. 1.7;\n Geneious v. 10.2\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 500.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 19:51:20\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,582\nCDSs (total) :: 2,529\nGenes (coding) :: 2,480\nCDSs (with protein) :: 2,480\nGenes (RNA) :: 53\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 48\nncRNAs :: 2\nPseudo Genes (total) :: 49\nCDSs (without protein) :: 49\nPseudo Genes (ambiguous residues) :: 0 of 49\nPseudo Genes (frameshifted) :: 19 of 49\nPseudo Genes (incomplete) :: 41 of 49\nPseudo Genes (internal stop) :: 4 of 49\nPseudo Genes (multiple problems) :: 14 of 49\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF020645.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904070.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904071.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004050576.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904074.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904076.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904077.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904078.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010904081.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904082.1
COORDINATES: protein motif:HMM:NF013324.2
COORDINATES: similar to AA sequence:RefSeq:WP_010904084.1
COORDINATES: similar to AA sequence:RefSeq:WP_009367515.1
GO:0008483 - transaminase activity [Evidence IEA]
GO:0019491 - ectoine biosynthetic process [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904086.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904087.1
IucA/IucC family siderophore biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904088.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904089.1
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904090.1
COORDINATES: similar to AA sequence:RefSeq:WP_004595771.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904092.1
COORDINATES: similar to AA sequence:RefSeq:WP_006650824.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011324109.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006113761.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904097.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904098.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289625.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289626.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904100.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904101.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904102.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904103.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289627.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904105.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904106.1
gas vesicle transcriptional activator GvpE
COORDINATES: similar to AA sequence:RefSeq:WP_010904107.1
COORDINATES: similar to AA sequence:RefSeq:WP_004056706.1
There are 14 genes on the gvp gene cluster in halophilic archaea. The product of gvpA is a structural component of gas vesicles, which provide buoyancy to cells and promote flotation. It has been reported that the products of gvpAO and gvpFGJKLM represent the minimal set required for gas vesicle formation in halophilic archaea; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012289628.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904110.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0031412 - gas vesicle organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904111.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904112.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904113.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904114.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904115.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904116.1
COORDINATES: similar to AA sequence:RefSeq:WP_008014905.1
biotin/lipoate A/B protein ligase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006112376.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807641.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904121.1
COORDINATES: similar to AA sequence:RefSeq:WP_006055967.1
metal ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904123.1
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865003.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904125.1
GO:0035673 - oligopeptide transmembrane transporter activity [Evidence IEA]
GO:0006857 - oligopeptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904126.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904127.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514846.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008326029.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904130.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904131.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904132.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904133.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904134.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310250.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180978.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010904137.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904138.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006180986.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006180987.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053133.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904143.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904144.1
GO:0004096 - catalase activity [Evidence IEA]; GO:0004601 - peroxidase activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005534329.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904146.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864005.1
acyl CoA:acetate/3-ketoacid CoA transferase
COORDINATES: similar to AA sequence:RefSeq:WP_011223347.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904149.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904150.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904151.1
GO:0008616 - queuosine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904152.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904153.1
6-pyruvoyl tetrahydropterin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010904154.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_012289640.1
GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012289641.1
aspartate carbamoyltransferase regulatory subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010904157.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904158.1
COORDINATES: similar to AA sequence:RefSeq:WP_005581508.1
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904160.1
GO:0008804 - carbamate kinase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904161.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904162.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904163.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289707.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904166.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904167.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557022.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011324395.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005043743.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904170.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289081.1
IS66-like element ISH10B family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007541950.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541953.1
halocin C8-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007541955.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088211.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006648437.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289608.1
IS4-like element ISH32 family transposase
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: similar to AA sequence:RefSeq:WP_008015529.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007344011.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006168495.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
FaeA/PapI family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006180988.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011571232.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308665.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890413.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_004592214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592217.1
COORDINATES: similar to AA sequence:RefSeq:WP_007109540.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458109.1
COORDINATES: similar to AA sequence:RefSeq:WP_004214920.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_015321229.1
COORDINATES: protein motif:HMM:NF037531.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
IS4-like element ISH5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012289545.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
ISH3-like element ISH3B family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667195.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014864301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014864302.1
COORDINATES: similar to AA sequence:RefSeq:WP_007541606.1
COORDINATES: protein motif:HMM:NF025638.2
COORDINATES: similar to AA sequence:RefSeq:WP_012289077.1
IS5-like element ISH1A family transposase