Ancylobacter polymorphus strain ZM13 plasmid pE, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter.
Network and meta-omics reveal the key degrader and cooperation patterns in an efficient 1,4-dioxane-degrading microbial community
Submitted (03-SEP-2021) College of Life Sciences, Zhejiang University, Yuhangtang Rode, Hangzhou, Zhejaing 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083244.1.\nBacteria and source DNA available from Zhenmei Lu, Ph.D, MOE\nLaboratory of Biosystem Homeostasis and Protection, College of Life\nSciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2020\nAssembly Method :: GS De Novo Assembler v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 99.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/21/2023 06:05:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,980\nCDSs (total) :: 4,919\nGenes (coding) :: 4,834\nCDSs (with protein) :: 4,834\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 33 of 85\nPseudo Genes (incomplete) :: 72 of 85\nPseudo Genes (internal stop) :: 12 of 85\nPseudo Genes (multiple problems) :: 22 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018068243.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: similar to AA sequence:RefSeq:WP_006205767.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015472924.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019998883.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018391339.1
COORDINATES: similar to AA sequence:RefSeq:WP_012553487.1
COORDINATES: similar to AA sequence:RefSeq:WP_013480810.1
COORDINATES: similar to AA sequence:RefSeq:WP_012457145.1
COORDINATES: similar to AA sequence:RefSeq:WP_008129339.1
COORDINATES: protein motif:HMM:NF041496.1
COORDINATES: similar to AA sequence:RefSeq:WP_006421375.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003515190.1
COORDINATES: similar to AA sequence:RefSeq:WP_018068242.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]