Ancylobacter polymorphus strain ZM13 plasmid pA, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Xanthobacteraceae; Ancylobacter.
Network and meta-omics reveal the key degrader and cooperation patterns in an efficient 1,4-dioxane-degrading microbial community
Submitted (03-SEP-2021) College of Life Sciences, Zhejiang University, Yuhangtang Rode, Hangzhou, Zhejaing 310058, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP083240.1.\nBacteria and source DNA available from Zhenmei Lu, Ph.D, MOE\nLaboratory of Biosystem Homeostasis and Protection, College of Life\nSciences, Zhejiang University, Hangzhou, Zhejiang, 310058, China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: AUG-2020\nAssembly Method :: GS De Novo Assembler v. 2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 99.0x\nSequencing Technology :: Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/21/2023 06:05:36\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,980\nCDSs (total) :: 4,919\nGenes (coding) :: 4,834\nCDSs (with protein) :: 4,834\nGenes (RNA) :: 61\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 33 of 85\nPseudo Genes (incomplete) :: 72 of 85\nPseudo Genes (internal stop) :: 12 of 85\nPseudo Genes (multiple problems) :: 22 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_004107266.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012456736.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015932946.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007558244.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014006979.1
COORDINATES: similar to AA sequence:RefSeq:WP_006498288.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0010181 - FMN binding [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013812952.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003523842.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018325620.1
COORDINATES: similar to AA sequence:RefSeq:WP_020046840.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: similar to AA sequence:RefSeq:WP_003523838.1
Ti-type conjugative transfer relaxase TraA
COORDINATES: similar to AA sequence:RefSeq:WP_003508816.1
COORDINATES: similar to AA sequence:RefSeq:WP_012654906.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_010974894.1
Ti-type conjugative transfer system protein TraG
COORDINATES: similar to AA sequence:RefSeq:WP_011578777.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006832494.1
COORDINATES: similar to AA sequence:RefSeq:WP_010974892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012477327.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248238.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931089.1
COORDINATES: similar to AA sequence:RefSeq:WP_007015522.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006023691.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_018494937.1
type II toxin-antitoxin system RelB/DinJ family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_011654733.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018482054.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023695.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718991.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019016367.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011389739.1
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018391535.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391638.1
COORDINATES: similar to AA sequence:RefSeq:WP_010510905.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010661770.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661771.1
COORDINATES: similar to AA sequence:RefSeq:WP_019577774.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603392.1
COORDINATES: similar to AA sequence:RefSeq:WP_010661781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012484837.1
COORDINATES: similar to AA sequence:RefSeq:WP_006961814.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018388351.1
COORDINATES: similar to AA sequence:RefSeq:WP_012521582.1
COORDINATES: similar to AA sequence:RefSeq:WP_008834099.1
GO:0004474 - malate synthase activity [Evidence IEA]
GO:0006097 - glyoxylate cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008509458.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009179429.1
GO:0005515 - protein binding [Evidence IEA]
GO:0006749 - glutathione metabolic process [Evidence IEA]
glutathione S-transferase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013500414.1
COORDINATES: similar to AA sequence:RefSeq:WP_006205278.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114218.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012114221.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_009807812.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570211.1
COORDINATES: similar to AA sequence:RefSeq:WP_013654803.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006614272.1
2Fe-2S iron-sulfur cluster binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013076037.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009030992.1
COORDINATES: similar to AA sequence:RefSeq:WP_009030993.1
COORDINATES: similar to AA sequence:RefSeq:WP_012041843.1
COORDINATES: similar to AA sequence:RefSeq:WP_009030995.1
GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006614267.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009030997.1
toluene-4-monooxygenase system B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019735504.1
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_011997539.1
IS1380-like element ISPme1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013836219.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011390589.1
COORDINATES: similar to AA sequence:RefSeq:WP_011509171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399276.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502925.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011982997.1
COORDINATES: similar to AA sequence:RefSeq:WP_020818539.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_011982795.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012562462.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_076611221.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611229.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019140267.1
CaiB/BaiF CoA-transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009737315.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019197712.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019955798.1
COORDINATES: similar to AA sequence:RefSeq:WP_018428191.1
GO:0004362 - glutathione-disulfide reductase (NADPH) activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002713034.1
class I adenylate-forming enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008834688.1
COORDINATES: similar to AA sequence:RefSeq:WP_006018763.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579711.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-linked oxidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019173060.1
COORDINATES: similar to AA sequence:RefSeq:WP_006178571.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001138082.1
COORDINATES: similar to AA sequence:RefSeq:WP_013836218.1
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015840579.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018331461.1
SMP-30/gluconolactonase/LRE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003568405.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399286.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502936.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399291.1
COORDINATES: similar to AA sequence:RefSeq:WP_010399294.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502934.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341994.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019200203.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013263588.1
COORDINATES: similar to AA sequence:RefSeq:WP_017502927.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200209.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913714.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913713.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009338084.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913705.1
COORDINATES: similar to AA sequence:RefSeq:WP_018431405.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873509.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_008873507.1
COORDINATES: similar to AA sequence:RefSeq:WP_008873506.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018391527.1
GO:0110001 - toxin-antitoxin complex [Evidence IEA]
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_014332777.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012385441.1
COORDINATES: protein motif:HMM:NF020419.2
COORDINATES: similar to AA sequence:RefSeq:WP_008878422.1
COORDINATES: similar to AA sequence:RefSeq:WP_013650748.1
COORDINATES: similar to AA sequence:RefSeq:WP_003612696.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330297.1
COORDINATES: similar to AA sequence:RefSeq:WP_018240852.1
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012649102.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013984785.1
COORDINATES: similar to AA sequence:RefSeq:WP_011505221.1
COORDINATES: similar to AA sequence:RefSeq:WP_008120552.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_012649097.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010974835.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_018482029.1
COORDINATES: similar to AA sequence:RefSeq:WP_013913813.1
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_012649093.1
COORDINATES: similar to AA sequence:RefSeq:WP_003523583.1
IncP-type conjugal transfer protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_017268463.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009762781.1
COORDINATES: similar to AA sequence:RefSeq:WP_015316777.1
COORDINATES: protein motif:HMM:NF012363.2
COORDINATES: similar to AA sequence:RefSeq:WP_018389257.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_011993001.1
autoinducer binding domain-containing protein
COORDINATES: protein motif:HMM:NF020789.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012484081.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702087.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859640.1
COORDINATES: similar to AA sequence:RefSeq:WP_014159582.1
COORDINATES: similar to AA sequence:RefSeq:WP_012968010.1
COORDINATES: similar to AA sequence:RefSeq:WP_014989700.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005138.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018208689.1
COORDINATES: similar to AA sequence:RefSeq:WP_006406696.1
COORDINATES: similar to AA sequence:RefSeq:WP_014068317.1
COORDINATES: protein motif:HMM:NF014573.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0008753 - NADPH dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014531491.1
COORDINATES: similar to AA sequence:RefSeq:WP_014531492.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006023179.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387543.1
COORDINATES: similar to AA sequence:RefSeq:WP_004684806.1
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_013167484.1
proton-translocating transhydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018044343.1
GO:0008746 - NAD(P)+ transhydrogenase activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_018185134.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0004174 - electron-transferring-flavoprotein dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0022900 - electron transport chain [Evidence IEA]
electron transfer flavoprotein-ubiquinone oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_007606159.1
COORDINATES: similar to AA sequence:RefSeq:WP_013761780.1
electron transfer flavoprotein subunit beta/FixA family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003533957.1
GO:0016829 - lyase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003533959.1
MaoC family dehydratase N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: protein motif:HMM:NF015905.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020100785.1
COORDINATES: similar to AA sequence:RefSeq:WP_010929282.1
GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009514983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006541759.1
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009522069.1
3-hydroxyacyl-CoA dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006410439.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011808032.1
COORDINATES: similar to AA sequence:RefSeq:WP_005793307.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018313062.1
COORDINATES: similar to AA sequence:RefSeq:WP_006410444.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008877620.1
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004636493.1
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399047.1
COORDINATES: protein motif:HMM:NF036686.2
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_009803608.1
COORDINATES: protein motif:HMM:NF018979.2
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017263942.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_006832032.1
COORDINATES: similar to AA sequence:RefSeq:WP_007707200.1
GO:0008410 - CoA-transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611470.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012561364.1
COORDINATES: similar to AA sequence:RefSeq:WP_012561363.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579845.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611488.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016552521.1
COORDINATES: similar to AA sequence:RefSeq:WP_013963089.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012870718.1
COORDINATES: protein motif:HMM:NF013134.2
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_011749817.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198541.1
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018517383.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009466713.1
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024206.2
ankyrin repeat domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019994498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012454916.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606158.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606159.1
hydantoinase B/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010394647.1
hydantoinase/oxoprolinase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011474025.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013812094.1
COORDINATES: similar to AA sequence:RefSeq:WP_008888068.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020041165.1
COORDINATES: protein motif:HMM:TIGR01730.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014766625.1
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0042908 - xenobiotic transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007761809.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
redox-sensitive transcriptional activator SoxR
COORDINATES: similar to AA sequence:RefSeq:WP_011048057.1
COORDINATES: similar to AA sequence:RefSeq:WP_014413871.1
COORDINATES: similar to AA sequence:RefSeq:WP_018717760.1
COORDINATES: similar to AA sequence:RefSeq:WP_019994672.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387803.1
GO:0004736 - pyruvate carboxylase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011970797.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612275.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018312603.1
COORDINATES: similar to AA sequence:RefSeq:WP_012562464.1
COORDINATES: similar to AA sequence:RefSeq:WP_006018749.1
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
COORDINATES: similar to AA sequence:RefSeq:WP_012563688.1
GO:0033608 - formyl-CoA transferase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0033611 - oxalate catabolic process [Evidence IEA]; GO:0009636 - response to toxic substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020092898.1
COORDINATES: similar to AA sequence:RefSeq:WP_015821555.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767291.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013913124.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010967756.1
COORDINATES: similar to AA sequence:RefSeq:WP_020022680.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008886747.1
COORDINATES: similar to AA sequence:RefSeq:WP_007792578.1
GO:0000150 - DNA strand exchange activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611442.1
COORDINATES: similar to AA sequence:RefSeq:WP_008159505.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008352.0
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012706258.1
COORDINATES: protein motif:HMM:NF017999.2
COORDINATES: similar to AA sequence:RefSeq:WP_007586867.1
COORDINATES: similar to AA sequence:RefSeq:WP_007744060.1
COORDINATES: similar to AA sequence:RefSeq:WP_017523635.1
COORDINATES: similar to AA sequence:RefSeq:WP_007586876.1
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012042486.1
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012592347.1
COORDINATES: similar to AA sequence:RefSeq:WP_018115927.1