Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete sequence.
Pseudomonas syringae pv. tomato str. DC3000
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000
Submitted (21-JAN-2010) Dept. of Plant Pathology, Plant Science Building, Cornell University, Cornell, NY 14853, USA
Submitted (03-MAR-2003) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA
REFSEQ INFORMATION: The reference sequence is identical to\nAE016854.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/01/2022 02:08:05\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 5,918\nCDSs (total) :: 5,835\nGenes (coding) :: 5,609\nCDSs (with protein) :: 5,609\nGenes (RNA) :: 83\nrRNAs :: 6, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 5, 5 (5S, 16S, 23S)\ntRNAs :: 63\nncRNAs :: 4\nPseudo Genes (total) :: 226\nCDSs (without protein) :: 226\nPseudo Genes (ambiguous residues) :: 0 of 226\nPseudo Genes (frameshifted) :: 62 of 226\nPseudo Genes (incomplete) :: 164 of 226\nPseudo Genes (internal stop) :: 42 of 226\nPseudo Genes (multiple problems) :: 37 of 226\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Pseudomonas syringae group genomosp. 3
COORDINATES: similar to AA sequence:RefSeq:WP_004667954.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611524.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007253143.1
COORDINATES: similar to AA sequence:RefSeq:WP_017708413.1
COORDINATES: similar to AA sequence:RefSeq:WP_003425014.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_007247514.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011168036.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017683476.1
COORDINATES: similar to AA sequence:RefSeq:WP_008077460.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002554417.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004887538.1
COORDINATES: protein motif:HMM:NF023996.2
COORDINATES: similar to AA sequence:RefSeq:NP_252867.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611155.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612058.1
IS5-like element ISPssy family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004661570.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_003381346.1
COORDINATES: similar to AA sequence:RefSeq:WP_005769731.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556051.1
COORDINATES: similar to AA sequence:RefSeq:WP_010206551.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TraR/DksA family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005769728.1
COORDINATES: similar to AA sequence:RefSeq:WP_004668036.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019331440.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_002556002.1
COORDINATES: similar to AA sequence:RefSeq:WP_005747127.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556034.1
COORDINATES: similar to AA sequence:RefSeq:WP_005769720.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666908.1
COORDINATES: similar to AA sequence:RefSeq:WP_017684526.1
COORDINATES: similar to AA sequence:RefSeq:WP_005622131.1
COORDINATES: similar to AA sequence:RefSeq:WP_020304521.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010209223.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011107021.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010218135.1
IS21-like element ISPsy4 family helper ATPase IstB
COORDINATES: similar to AA sequence:RefSeq:WP_002551322.1
IS21-like element ISPsy4 family transposase
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_020313337.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004667971.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004661844.1
COORDINATES: similar to AA sequence:RefSeq:WP_003319387.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004668202.1
COORDINATES: similar to AA sequence:RefSeq:WP_005622143.1
COORDINATES: similar to AA sequence:RefSeq:WP_005740400.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011106980.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020325434.1
type IV secretion system DotC family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005759128.1
COORDINATES: similar to AA sequence:RefSeq:WP_004643879.1
COORDINATES: similar to AA sequence:RefSeq:WP_007247250.1
COORDINATES: similar to AA sequence:RefSeq:WP_010208376.1
COORDINATES: similar to AA sequence:RefSeq:WP_003344363.1
COORDINATES: similar to AA sequence:RefSeq:WP_007247249.1
COORDINATES: similar to AA sequence:RefSeq:WP_019331471.1
COORDINATES: similar to AA sequence:RefSeq:WP_004661192.1
DotI/IcmL family type IV secretion protein
COORDINATES: protein motif:HMM:NF023713.2
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_010209698.1
COORDINATES: similar to AA sequence:RefSeq:WP_019331473.1
COORDINATES: similar to AA sequence:RefSeq:WP_020325426.1
COORDINATES: similar to AA sequence:RefSeq:WP_005759143.1
COORDINATES: similar to AA sequence:RefSeq:WP_010209692.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556014.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556016.1
COORDINATES: similar to AA sequence:RefSeq:WP_003344384.1
COORDINATES: similar to AA sequence:RefSeq:WP_004666879.1
COORDINATES: similar to AA sequence:RefSeq:WP_003344389.1
COORDINATES: similar to AA sequence:RefSeq:WP_005759157.1
plasmid IncI1-type surface exclusion protein ExcA
COORDINATES: similar to AA sequence:RefSeq:WP_007247236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004644068.1
COORDINATES: similar to AA sequence:RefSeq:WP_011236957.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005769748.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020325419.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003381788.1