Halobacterium noricense strain JCM 15102 plasmid unnamed2, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.
Halobacterium noricense sp. nov., an archaeal isolate from a bore core of an alpine Permian salt deposit, classification of Halobacterium sp. NRC-1 as a strain of H. salinarum and emended description of H. salinarum
Submitted (11-DEC-2021) School of Food and Biological Engineering, Jiangsu University, No 301 Xuefu Road, Jingkou District, Zhenjiang, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP089470.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 594.71x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 03:28:34\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,553\nCDSs (total) :: 3,499\nGenes (coding) :: 3,416\nCDSs (with protein) :: 3,416\nGenes (RNA) :: 54\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 34 of 83\nPseudo Genes (incomplete) :: 59 of 83\nPseudo Genes (internal stop) :: 24 of 83\nPseudo Genes (multiple problems) :: 27 of 83\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008006318.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012289254.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039348.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847016.1
COORDINATES: similar to AA sequence:RefSeq:WP_006630784.1
COORDINATES: similar to AA sequence:RefSeq:WP_006651308.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004046283.1
COORDINATES: similar to AA sequence:RefSeq:WP_010903158.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006630749.1
COORDINATES: similar to AA sequence:RefSeq:WP_006114783.1
COORDINATES: similar to AA sequence:RefSeq:WP_007992736.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289753.1
COORDINATES: similar to AA sequence:RefSeq:WP_008013385.1
COORDINATES: similar to AA sequence:RefSeq:WP_013876046.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890411.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904014.1
COORDINATES: similar to AA sequence:RefSeq:WP_008319111.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_006181008.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR04216.1
HVO_2072 family ArtA-dependent S-layer glycoprotein
COORDINATES: protein motif:HMM:NF037417.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015513.2
helix-turn-helix transcriptional regulator
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015762108.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289760.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890429.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010904019.1