Indioceanicola profundi strain SCSIO 08040 plasmid unnamed3, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Indioceanicola.
Whole genome sequence of Indioceanicola profundi
Submitted (21-JUN-2018) 164, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP030129.1.\nBacteria and source DNA available from Xinpeng Tian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 03-JUN-2018\nAssembly Method :: Celera Assembler v. 8.3; FALCON v. v0.3.0\nAssembly Name :: SCSIO_08040\nExpected Final Version :: yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:51:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,992\nCDSs (total) :: 4,908\nGenes (coding) :: 4,795\nCDSs (with protein) :: 4,795\nGenes (RNA) :: 84\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 45 of 113\nPseudo Genes (incomplete) :: 75 of 113\nPseudo Genes (internal stop) :: 19 of 113\nPseudo Genes (multiple problems) :: 24 of 113\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_012977412.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
aromatic/alkene/methane monooxygenase hydroxylase/oxygenase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_014188412.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013167540.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188414.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015317695.1
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: similar to AA sequence:RefSeq:WP_012455634.1
GO:0004803 - transposase activity [Evidence IEA]
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007668493.1
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_019463317.1
COORDINATES: similar to AA sequence:RefSeq:WP_004615017.1
COORDINATES: similar to AA sequence:RefSeq:WP_015275850.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007068331.1
COORDINATES: similar to AA sequence:RefSeq:WP_017181853.1
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012751925.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_011251538.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024776.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014642275.1
COORDINATES: similar to AA sequence:RefSeq:WP_015280471.1
COORDINATES: similar to AA sequence:RefSeq:WP_013374913.1
GO:0004805 - trehalose-phosphatase activity [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007013925.1
COORDINATES: similar to AA sequence:RefSeq:WP_018700178.1
COORDINATES: similar to AA sequence:RefSeq:WP_007066008.1
COORDINATES: protein motif:HMM:NF021778.2
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008892281.1
COORDINATES: similar to AA sequence:RefSeq:WP_007421792.1
COORDINATES: similar to AA sequence:RefSeq:WP_009452569.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892272.1
COORDINATES: similar to AA sequence:RefSeq:WP_009542637.1
GO:0045275 - respiratory chain complex III [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0008121 - ubiquinol-cytochrome-c reductase activity [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
ubiquinol-cytochrome c reductase iron-sulfur subunit
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: similar to AA sequence:RefSeq:WP_008892269.1
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_013846857.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011583196.1
COORDINATES: similar to AA sequence:RefSeq:WP_010959660.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014457234.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567606.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013417725.1
COORDINATES: similar to AA sequence:RefSeq:WP_003064452.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018259689.1
GO:0016868 - intramolecular transferase activity, phosphotransferases [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
alpha-D-glucose phosphate-specific phosphoglucomutase
COORDINATES: similar to AA sequence:RefSeq:WP_013032725.1
COORDINATES: similar to AA sequence:RefSeq:WP_008957686.1
COORDINATES: similar to AA sequence:RefSeq:WP_008438558.1
type II glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF015094.2
COORDINATES: similar to AA sequence:RefSeq:WP_009541505.1
cyclopropane-fatty-acyl-phospholipid synthase family protein
COORDINATES: protein motif:HMM:NF016811.2
COORDINATES: similar to AA sequence:RefSeq:WP_007182851.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011930950.1
isoprenylcysteine carboxylmethyltransferase family protein
COORDINATES: protein motif:HMM:NF023095.2
COORDINATES: similar to AA sequence:RefSeq:WP_013833458.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_008892258.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972930.1
GO:0004373 - glycogen (starch) synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014238612.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892262.1
COORDINATES: protein motif:HMM:NF015909.2
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_015241571.1
COORDINATES: similar to AA sequence:RefSeq:WP_007013928.1
1-phosphofructokinase family hexose kinase
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_014131924.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500713.1
COORDINATES: similar to AA sequence:RefSeq:WP_007010375.1
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: similar to AA sequence:RefSeq:WP_012047474.1
COORDINATES: similar to AA sequence:RefSeq:WP_008827611.1
P-type conjugative transfer protein TrbL
COORDINATES: similar to AA sequence:RefSeq:WP_011747797.1
GO:0009292 - horizontal gene transfer [Evidence IEA]
putative entry exclusion protein TrbK-alt
COORDINATES: similar to AA sequence:RefSeq:WP_008827609.1
P-type conjugative transfer protein TrbJ
COORDINATES: similar to AA sequence:RefSeq:WP_009573787.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287846.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_011746505.1
COORDINATES: similar to AA sequence:RefSeq:WP_012047467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579860.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009734049.1
COORDINATES: similar to AA sequence:RefSeq:WP_012112579.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660153.1
COORDINATES: similar to AA sequence:RefSeq:WP_010660154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012367381.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012112575.1
COORDINATES: similar to AA sequence:RefSeq:WP_018317688.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114863.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018390171.1
COORDINATES: similar to AA sequence:RefSeq:WP_010395099.1
COORDINATES: similar to AA sequence:RefSeq:WP_014414856.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287836.1
COORDINATES: similar to AA sequence:RefSeq:WP_014414854.1
COORDINATES: similar to AA sequence:RefSeq:WP_009337868.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400670.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013651060.1
COORDINATES: protein motif:HMM:NF040446.1
COORDINATES: similar to AA sequence:RefSeq:WP_017998423.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400666.1
COORDINATES: similar to AA sequence:RefSeq:WP_011579875.1
COORDINATES: similar to AA sequence:RefSeq:WP_012190816.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_013654509.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009807499.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008672899.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017730893.1
COORDINATES: similar to AA sequence:RefSeq:WP_012454942.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400660.1
COORDINATES: similar to AA sequence:RefSeq:WP_013500668.1
COORDINATES: similar to AA sequence:RefSeq:WP_015597237.1
COORDINATES: similar to AA sequence:RefSeq:WP_008892241.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: similar to AA sequence:RefSeq:WP_009209172.1
COORDINATES: similar to AA sequence:RefSeq:WP_104009825.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005611038.1
mercury resistance system transport protein MerF
COORDINATES: similar to AA sequence:RefSeq:WP_017927535.1
mercuric transporter MerT family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015500693.1
COORDINATES: similar to AA sequence:RefSeq:WP_019400655.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_018182619.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007565336.1
CDF family Co(II)/Ni(II) efflux transporter DmeF
COORDINATES: similar to AA sequence:RefSeq:WP_020088091.1
COORDINATES: similar to AA sequence:RefSeq:WP_003497268.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012290080.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746186.1
COORDINATES: similar to AA sequence:RefSeq:WP_014746185.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003571569.1
nucleotidyl transferase AbiEii/AbiGii toxin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014132759.1
type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009807860.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198997.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749390.1
COORDINATES: similar to AA sequence:RefSeq:WP_016537147.1
COORDINATES: similar to AA sequence:RefSeq:WP_016537146.1
COORDINATES: similar to AA sequence:RefSeq:WP_008557970.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011388434.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568916.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004272565.1
COORDINATES: similar to AA sequence:RefSeq:WP_007800666.1
COORDINATES: protein motif:HMM:NF025019.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024934.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF012257.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: similar to AA sequence:RefSeq:WP_012259872.1
COORDINATES: similar to AA sequence:RefSeq:WP_007121580.1
COORDINATES: protein motif:HMM:NF023036.2
COORDINATES: similar to AA sequence:RefSeq:WP_006938502.1
COORDINATES: protein motif:HMM:NF027890.2
COORDINATES: protein motif:HMM:NF025056.2
COORDINATES: similar to AA sequence:RefSeq:WP_015241498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012522039.1
COORDINATES: protein motif:HMM:NF015863.2
COORDINATES: protein motif:HMM:TIGR01941.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_005185115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568376.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012568377.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004272281.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015955288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011683401.1
formate/nitrite transporter family protein
two pore domain potassium channel family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012568141.1
four-helix bundle copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012092676.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014853003.1
COORDINATES: similar to AA sequence:RefSeq:WP_013301786.1
COORDINATES: similar to AA sequence:RefSeq:WP_020164516.1
COORDINATES: similar to AA sequence:RefSeq:WP_015433753.1
COORDINATES: similar to AA sequence:RefSeq:WP_008946229.1
COORDINATES: similar to AA sequence:RefSeq:WP_019460582.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_008946281.1
COORDINATES: similar to AA sequence:RefSeq:WP_008193481.1
COORDINATES: protein motif:HMM:NF017262.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612206.1
COORDINATES: similar to AA sequence:RefSeq:WP_007564003.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977646.1
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012487454.1
COORDINATES: similar to AA sequence:RefSeq:WP_009492197.1
GO:0006878 - cellular copper ion homeostasis [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
Cu(I)-responsive transcriptional regulator
COORDINATES: protein motif:HMM:NF019886.2
sigma factor-like helix-turn-helix DNA-binding protein
manganese efflux pump MntP family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015931502.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018700951.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013648440.1
COORDINATES: similar to AA sequence:RefSeq:WP_007090089.1
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
COORDINATES: similar to AA sequence:RefSeq:WP_007121398.1
COORDINATES: similar to AA sequence:RefSeq:WP_007348551.1
COORDINATES: protein motif:HMM:NF016221.2
COORDINATES: protein motif:HMM:NF020123.2
COORDINATES: similar to AA sequence:RefSeq:WP_008946237.1
COORDINATES: protein motif:HMM:NF014713.2
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004212984.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503858.1
COORDINATES: similar to AA sequence:RefSeq:WP_014891287.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: similar to AA sequence:RefSeq:WP_007002446.1
COORDINATES: similar to AA sequence:RefSeq:WP_012114891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008068555.1
COORDINATES: protein motif:HMM:NF012722.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612078.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612145.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015918564.1
COORDINATES: similar to AA sequence:RefSeq:WP_000905001.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008839504.1
COORDINATES: similar to AA sequence:RefSeq:WP_019505326.1
COORDINATES: similar to AA sequence:RefSeq:WP_013959874.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]; GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_013654510.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008391930.1
COORDINATES: similar to AA sequence:RefSeq:WP_011003443.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_020179897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007002453.1
COORDINATES: protein motif:HMM:NF013382.2
methyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015928807.1
COORDINATES: similar to AA sequence:RefSeq:WP_005964848.1
COORDINATES: similar to AA sequence:RefSeq:WP_008928738.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
COORDINATES: similar to AA sequence:RefSeq:WP_020094673.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611275.1
GO:0015074 - DNA integration [Evidence IEA]
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004273020.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: nucleotide motif:Rfam:14.4:RF01497
AL1L pseudoknot; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF020859.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_014242639.1
COORDINATES: protein motif:HMM:NF024858.2
COORDINATES: similar to AA sequence:RefSeq:WP_012977407.1
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015258805.1
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011828554.1
COORDINATES: similar to AA sequence:RefSeq:WP_008919786.1
COORDINATES: similar to AA sequence:RefSeq:WP_012977410.1
aromatic/alkene monooxygenase hydroxylase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_014188410.1