Indioceanicola profundi strain SCSIO 08040 plasmid unnamed2, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Indioceanicola.
Whole genome sequence of Indioceanicola profundi
Submitted (21-JUN-2018) 164, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP030128.1.\nBacteria and source DNA available from Xinpeng Tian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 03-JUN-2018\nAssembly Method :: Celera Assembler v. 8.3; FALCON v. v0.3.0\nAssembly Name :: SCSIO_08040\nExpected Final Version :: yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:51:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,992\nCDSs (total) :: 4,908\nGenes (coding) :: 4,795\nCDSs (with protein) :: 4,795\nGenes (RNA) :: 84\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 45 of 113\nPseudo Genes (incomplete) :: 75 of 113\nPseudo Genes (internal stop) :: 19 of 113\nPseudo Genes (multiple problems) :: 24 of 113\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF015445.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
C4-dicarboxylate TRAP transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: similar to AA sequence:RefSeq:WP_008382977.1
COORDINATES: similar to AA sequence:RefSeq:WP_004446585.1
COORDINATES: similar to AA sequence:RefSeq:WP_006020091.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013651458.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: similar to AA sequence:RefSeq:WP_011388434.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004263517.1
COORDINATES: protein motif:HMM:NF018172.2
COORDINATES: protein motif:HMM:NF018942.2
COORDINATES: similar to AA sequence:RefSeq:WP_008291245.1
methylamine dehydrogenase accessory protein MauD
COORDINATES: similar to AA sequence:RefSeq:WP_019883212.1
GO:0052876 - methylamine dehydrogenase (amicyanin) activity [Evidence IEA]
methylamine dehydrogenase (amicyanin) small subunit
COORDINATES: protein motif:HMM:NF037546.2
COORDINATES: protein motif:HMM:NF024039.2
COORDINATES: similar to AA sequence:RefSeq:WP_008291377.1
COORDINATES: similar to AA sequence:RefSeq:WP_010396587.1
COORDINATES: similar to AA sequence:RefSeq:WP_012605638.1
quinol dehydrogenase ferredoxin subunit NapH
COORDINATES: similar to AA sequence:RefSeq:WP_014762735.1
COORDINATES: protein motif:HMM:NF021576.2
COORDINATES: similar to AA sequence:RefSeq:WP_020704180.1
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017916840.1
LytTR family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009490025.1
COORDINATES: similar to AA sequence:RefSeq:WP_004358119.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340218.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009522941.1
COORDINATES: similar to AA sequence:RefSeq:WP_001206197.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020593828.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340224.1
COORDINATES: protein motif:HMM:TIGR02122.1
GO:0005215 - transporter activity [Evidence IEA]
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330376.1
COORDINATES: similar to AA sequence:RefSeq:WP_011654624.1
COORDINATES: protein motif:HMM:NF015418.2
COORDINATES: similar to AA sequence:RefSeq:WP_012565690.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241888.1
GO:0009061 - anaerobic respiration [Evidence IEA]
nitrate reductase cytochrome c-type subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012565688.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0008940 - nitrate reductase activity [Evidence IEA]
nitrate reductase catalytic subunit NapA
COORDINATES: similar to AA sequence:RefSeq:WP_012565687.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565686.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007797030.1
GO:0009325 - nitrate reductase complex [Evidence IEA]
GO:0008940 - nitrate reductase activity [Evidence IEA]
GO:0042126 - nitrate metabolic process [Evidence IEA]
periplasmic nitrate reductase, NapE protein
COORDINATES: protein motif:HMM:NF025013.2
COORDINATES: similar to AA sequence:RefSeq:WP_013503631.1
catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020372141.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0008941 - nitric oxide dioxygenase activity [Evidence IEA]; GO:0019825 - oxygen binding [Evidence IEA]
GO:0051409 - response to nitrosative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015821561.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005079007.1
COORDINATES: similar to AA sequence:RefSeq:WP_015340930.1
COORDINATES: similar to AA sequence:RefSeq:WP_007790574.1
COORDINATES: similar to AA sequence:RefSeq:WP_012226758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012287263.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009540312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567721.1
COORDINATES: similar to AA sequence:RefSeq:WP_019199486.1
COORDINATES: similar to AA sequence:RefSeq:WP_010434895.1
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012382931.1
COORDINATES: protein motif:HMM:NF024934.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF019886.2
sigma-70 region 4 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018262625.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: protein motif:HMM:NF014763.2
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020092204.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024092.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF015983.2
COORDINATES: protein motif:HMM:NF013522.2
GO:0016853 - isomerase activity [Evidence IEA]
GO:0006725 - cellular aromatic compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005642829.1
COORDINATES: protein motif:HMM:NF020509.2
COORDINATES: protein motif:HMM:NF037286.2
COORDINATES: similar to AA sequence:RefSeq:WP_010687055.1
COORDINATES: similar to AA sequence:RefSeq:WP_007873120.1
COORDINATES: protein motif:HMM:NF020037.2
COORDINATES: protein motif:HMM:NF012257.2
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF025694.2
COORDINATES: similar to AA sequence:RefSeq:WP_007562322.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF013736.2
COORDINATES: similar to AA sequence:RefSeq:WP_044551230.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611121.1
COORDINATES: protein motif:HMM:NF012245.2
GO:0007165 - signal transduction [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013094.2
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: similar to AA sequence:RefSeq:WP_015918564.1
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015459083.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242639.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017959151.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_012706353.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: similar to AA sequence:RefSeq:WP_015954500.1
COORDINATES: similar to AA sequence:RefSeq:WP_003551406.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014753347.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_007005645.1
COORDINATES: similar to AA sequence:RefSeq:WP_004274244.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014497083.1
COORDINATES: similar to AA sequence:RefSeq:WP_014497084.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330504.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
DctP family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF017081.2
COORDINATES: similar to AA sequence:RefSeq:WP_010514616.1
COORDINATES: similar to AA sequence:RefSeq:WP_003596939.1
COORDINATES: protein motif:HMM:NF014567.2
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018259945.1
COORDINATES: similar to AA sequence:RefSeq:WP_013094627.1
COORDINATES: similar to AA sequence:RefSeq:WP_012702140.1
COORDINATES: similar to AA sequence:RefSeq:WP_012330386.1
COORDINATES: similar to AA sequence:RefSeq:WP_013167202.1
COORDINATES: similar to AA sequence:RefSeq:WP_003599675.1
COORDINATES: similar to AA sequence:RefSeq:WP_013167190.1
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: protein motif:HMM:NF012573.2
COORDINATES: similar to AA sequence:RefSeq:WP_012563998.1
COORDINATES: similar to AA sequence:RefSeq:WP_018270758.1
COORDINATES: protein motif:HMM:NF019310.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012553005.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020590679.1
COORDINATES: similar to AA sequence:RefSeq:WP_012042402.1
GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_007673553.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945721.1
GO:0019645 - anaerobic electron transport chain [Evidence IEA]
dimethyl sulfoxide reductase anchor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_009337188.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010913367.1
molybdopterin oxidoreductase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012563873.1
COORDINATES: similar to AA sequence:RefSeq:WP_009340639.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_018214563.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200218.1
tripartite tricarboxylate transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_014200217.1
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200216.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014200215.1
GO:0016746 - acyltransferase activity [Evidence IEA]
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014200214.1
COORDINATES: similar to AA sequence:RefSeq:WP_015952138.1
GO:0050487 - sulfoacetaldehyde acetyltransferase activity [Evidence IEA]
GO:0019529 - taurine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612145.1
COORDINATES: similar to AA sequence:RefSeq:WP_019200259.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611226.1
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_086558212.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014200213.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199526.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_009489204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007702758.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568857.1
COORDINATES: similar to AA sequence:RefSeq:WP_019905747.1
COORDINATES: similar to AA sequence:RefSeq:WP_007814304.1
iron ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_020180294.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO
COORDINATES: similar to AA sequence:RefSeq:WP_015913854.1
molybdate ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013900645.1
COORDINATES: protein motif:HMM:NF016013.2
COORDINATES: similar to AA sequence:RefSeq:WP_017504479.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611488.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009488681.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219492.1
COORDINATES: similar to AA sequence:RefSeq:WP_020397323.1
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219194.1
COORDINATES: protein motif:HMM:NF012447.2
COORDINATES: protein motif:HMM:TIGR02372.1
COORDINATES: similar to AA sequence:RefSeq:WP_011814604.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: similar to AA sequence:RefSeq:WP_007559014.1
COORDINATES: protein motif:HMM:NF015867.2
COORDINATES: similar to AA sequence:RefSeq:WP_014442303.1
COORDINATES: protein motif:HMM:NF025167.2
COORDINATES: similar to AA sequence:RefSeq:WP_019197443.1
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:NF023444.2
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011331086.1
type II secretion system major pseudopilin GspG
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015258712.1
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:TIGR02517.1
COORDINATES: similar to AA sequence:RefSeq:WP_015768048.1
COORDINATES: protein motif:HMM:NF012863.2
GDSL-type esterase/lipase family protein
COORDINATES: protein motif:HMM:NF016992.2
COORDINATES: protein motif:HMM:NF040576.1
COORDINATES: similar to AA sequence:RefSeq:WP_007597303.1
COORDINATES: protein motif:HMM:NF017591.2
COORDINATES: protein motif:HMM:NF015000.2
esterase-like activity of phytase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004582328.1
COORDINATES: similar to AA sequence:RefSeq:WP_006448786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008575739.1
COORDINATES: similar to AA sequence:RefSeq:WP_014429380.1
COORDINATES: protein motif:HMM:NF010411.0
two-component system VirA-like sensor kinase
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: similar to AA sequence:RefSeq:WP_013077403.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528014.1
COORDINATES: similar to AA sequence:RefSeq:WP_005285778.1
COORDINATES: similar to AA sequence:RefSeq:WP_008968741.1
COORDINATES: similar to AA sequence:RefSeq:WP_013165361.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007557785.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013165359.1
COORDINATES: similar to AA sequence:RefSeq:WP_019962690.1
COORDINATES: similar to AA sequence:RefSeq:WP_011974572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014528736.1
COORDINATES: protein motif:HMM:NF014758.2
COORDINATES: similar to AA sequence:RefSeq:WP_012047578.1
COORDINATES: similar to AA sequence:RefSeq:WP_008194582.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_009109515.1
COORDINATES: protein motif:HMM:TIGR02293.1
COORDINATES: similar to AA sequence:RefSeq:WP_013691888.1
COORDINATES: protein motif:HMM:NF019352.2
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198104.1
COORDINATES: similar to AA sequence:RefSeq:WP_017670016.1
COORDINATES: similar to AA sequence:RefSeq:WP_013892029.1
COORDINATES: similar to AA sequence:RefSeq:WP_003234487.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198101.1
iron chelate uptake ABC transporter family permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014130320.1
COORDINATES: similar to AA sequence:RefSeq:WP_008936749.1
siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_010339659.1
COORDINATES: similar to AA sequence:RefSeq:WP_017500119.1
COORDINATES: similar to AA sequence:RefSeq:WP_012452434.1
COORDINATES: protein motif:HMM:NF017088.2
COORDINATES: protein motif:HMM:NF024600.2
COORDINATES: protein motif:HMM:NF018744.2
COORDINATES: protein motif:HMM:NF017021.2
COORDINATES: similar to AA sequence:RefSeq:WP_015236287.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_004373579.1
COORDINATES: similar to AA sequence:RefSeq:WP_007149517.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
redox-sensitive transcriptional activator SoxR
COORDINATES: protein motif:HMM:TIGR01730.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013249998.1
COORDINATES: similar to AA sequence:RefSeq:WP_014241826.1
COORDINATES: similar to AA sequence:RefSeq:WP_014527439.1
COORDINATES: similar to AA sequence:RefSeq:WP_016734484.1
COORDINATES: similar to AA sequence:RefSeq:WP_009618131.1
COORDINATES: similar to AA sequence:RefSeq:WP_019197015.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007403516.1
COORDINATES: protein motif:HMM:NF016908.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024968.2
COORDINATES: protein motif:HMM:NF027681.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010960458.1
COORDINATES: similar to AA sequence:RefSeq:WP_003526444.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: protein motif:HMM:NF022800.2
COORDINATES: similar to AA sequence:RefSeq:WP_003482668.1
COORDINATES: similar to AA sequence:RefSeq:WP_014161013.1
type II secretion system inner membrane protein GspF
COORDINATES: similar to AA sequence:RefSeq:WP_003119751.1
COORDINATES: protein motif:HMM:TIGR01708.2
type II secretion system minor pseudopilin GspH
COORDINATES: similar to AA sequence:RefSeq:WP_010403189.1
type II secretion system minor pseudopilin GspI
COORDINATES: protein motif:HMM:TIGR01711.1
type II secretion system minor pseudopilin GspJ
COORDINATES: protein motif:HMM:NF037980.1
GO:0009306 - protein secretion [Evidence IEA]
type II secretion system minor pseudopilin GspK
COORDINATES: protein motif:HMM:TIGR01709.2
COORDINATES: protein motif:HMM:NF016493.2
COORDINATES: protein motif:HMM:NF013376.2
COORDINATES: similar to AA sequence:RefSeq:WP_015914829.1
COORDINATES: protein motif:HMM:NF023645.2
COORDINATES: similar to AA sequence:RefSeq:WP_011397214.1
COORDINATES: similar to AA sequence:RefSeq:WP_008619766.1
COORDINATES: similar to AA sequence:RefSeq:WP_015498222.1
COORDINATES: similar to AA sequence:RefSeq:WP_008128045.1
COORDINATES: similar to AA sequence:RefSeq:WP_007439455.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: protein motif:HMM:NF024170.2
COORDINATES: similar to AA sequence:RefSeq:WP_003382753.1
COORDINATES: similar to AA sequence:RefSeq:WP_014748172.1
COORDINATES: similar to AA sequence:RefSeq:WP_012978512.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250051.1
PAS domain-containing hybrid sensor histidine kinase/response regulator
COORDINATES: protein motif:HMM:NF024140.2
MCP four helix bundle domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018268225.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567608.1
COORDINATES: protein motif:HMM:NF014573.2
COORDINATES: similar to AA sequence:RefSeq:WP_009867220.1
COORDINATES: similar to AA sequence:RefSeq:WP_011841556.1
COORDINATES: similar to AA sequence:RefSeq:WP_011338351.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005991630.1
COORDINATES: similar to AA sequence:RefSeq:WP_011645990.1
COORDINATES: similar to AA sequence:RefSeq:WP_007534007.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168318.1
COORDINATES: similar to AA sequence:RefSeq:WP_013168319.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: similar to AA sequence:RefSeq:WP_019463317.1
COORDINATES: protein motif:HMM:NF024884.2
COORDINATES: protein motif:HMM:NF015022.2
COORDINATES: protein motif:HMM:NF025304.2
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_006832482.1
COORDINATES: protein motif:HMM:NF015863.2
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611773.1
COORDINATES: similar to AA sequence:RefSeq:WP_017957411.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010187966.1
COORDINATES: similar to AA sequence:RefSeq:WP_012333997.1
COORDINATES: protein motif:HMM:NF012354.2
COORDINATES: similar to AA sequence:RefSeq:WP_011391223.1
COORDINATES: similar to AA sequence:RefSeq:WP_013762166.1
COORDINATES: similar to AA sequence:RefSeq:WP_012111282.1
COORDINATES: similar to AA sequence:RefSeq:WP_043767036.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: protein motif:HMM:NF013395.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012606247.1
COORDINATES: protein motif:HMM:NF025091.2
isocitrate lyase/phosphoenolpyruvate mutase family protein
COORDINATES: protein motif:HMM:NF033580.1
COORDINATES: similar to AA sequence:RefSeq:WP_011659338.1
COORDINATES: similar to AA sequence:RefSeq:WP_019196162.1
COORDINATES: similar to AA sequence:RefSeq:WP_014871066.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011831228.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_004103478.1
COORDINATES: similar to AA sequence:RefSeq:WP_012278387.1
COORDINATES: similar to AA sequence:RefSeq:WP_006144162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007917405.1
COORDINATES: similar to AA sequence:RefSeq:WP_014871071.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488988.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567905.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_020721488.1
COORDINATES: similar to AA sequence:RefSeq:WP_052642687.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606163.1
COORDINATES: protein motif:HMM:NF023113.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611376.1
COORDINATES: protein motif:HMM:NF015431.2