Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Indioceanicola.
Whole genome sequence of Indioceanicola profundi
Submitted (21-JUN-2018) 164, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP030127.1.\nBacteria and source DNA available from Xinpeng Tian.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 03-JUN-2018\nAssembly Method :: Celera Assembler v. 8.3; FALCON v. v0.3.0\nAssembly Name :: SCSIO_08040\nExpected Final Version :: yes\nGenome Coverage :: 212.0x\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/25/2022 03:51:54\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,992\nCDSs (total) :: 4,908\nGenes (coding) :: 4,795\nCDSs (with protein) :: 4,795\nGenes (RNA) :: 84\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 45 of 113\nPseudo Genes (incomplete) :: 75 of 113\nPseudo Genes (internal stop) :: 19 of 113\nPseudo Genes (multiple problems) :: 24 of 113\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012565.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012565398.1
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:NF017079.2
spore coat protein U domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014190022.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008892077.1
sigma-54 dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: similar to AA sequence:RefSeq:WP_012565594.1
GO:0030253 - protein secretion by the type I secretion system [Evidence IEA]
HlyD family type I secretion periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_017430847.1
COORDINATES: similar to AA sequence:RefSeq:WP_004274423.1
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: similar to AA sequence:RefSeq:WP_020682495.1
GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011391404.1
COORDINATES: similar to AA sequence:RefSeq:WP_010959957.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011388007.1
COORDINATES: protein motif:HMM:TIGR04325.1
COORDINATES: similar to AA sequence:RefSeq:WP_018506503.1
COORDINATES: similar to AA sequence:RefSeq:WP_011958562.1
COORDINATES: similar to AA sequence:RefSeq:WP_018506501.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014088390.1
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612267.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016908.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: similar to AA sequence:RefSeq:WP_020405764.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: similar to AA sequence:RefSeq:WP_006471149.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015596335.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:NF017857.2
COORDINATES: protein motif:HMM:NF018010.2
COORDINATES: protein motif:HMM:NF022552.2
COORDINATES: similar to AA sequence:RefSeq:WP_008489347.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568916.1
COORDINATES: similar to AA sequence:RefSeq:WP_020466843.1
COORDINATES: similar to AA sequence:RefSeq:WP_012562492.1
COORDINATES: similar to AA sequence:RefSeq:WP_015259450.1
GO:0008968 - D-sedoheptulose 7-phosphate isomerase activity [Evidence IEA]
GO:0009244 - lipopolysaccharide core region biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012566038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014190025.1
COORDINATES: similar to AA sequence:RefSeq:WP_004733264.1
COORDINATES: protein motif:HMM:NF016228.2
COORDINATES: protein motif:HMM:NF023354.2
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: similar to AA sequence:RefSeq:WP_012568913.1
GO:0016853 - isomerase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
KpsF/GutQ family sugar-phosphate isomerase
COORDINATES: protein motif:HMM:NF013706.2
fumarylacetoacetate hydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014240785.1
COORDINATES: protein motif:HMM:NF012869.2
COORDINATES: similar to AA sequence:RefSeq:WP_012568904.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012568903.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189395.1
COORDINATES: protein motif:HMM:NF024858.2
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024589.2
COORDINATES: protein motif:HMM:TIGR03506.1
flagellar hook-basal body complex protein
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: protein motif:HMM:NF018458.2
COORDINATES: protein motif:HMM:NF018959.2
COORDINATES: protein motif:HMM:NF012874.2
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF025214.2
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF019024.2
COORDINATES: similar to AA sequence:RefSeq:WP_016785855.1
COORDINATES: protein motif:HMM:TIGR02492.1
GO:0009424 - bacterial-type flagellum hook [Evidence IEA]
GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF025871.2
iron-containing redox enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017289950.1
COORDINATES: protein motif:HMM:NF017522.2
COORDINATES: similar to AA sequence:RefSeq:WP_009020655.1
GO:0019180 - dTDP-4-amino-4,6-dideoxygalactose transaminase activity [Evidence IEA]
GO:0009246 - enterobacterial common antigen biosynthetic process [Evidence IEA]
dTDP-4-amino-4,6-dideoxygalactose transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014188901.1
COORDINATES: similar to AA sequence:RefSeq:WP_014200331.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012382936.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701799.1
COORDINATES: similar to AA sequence:RefSeq:WP_014395661.1
COORDINATES: similar to AA sequence:RefSeq:WP_008503223.1
COORDINATES: similar to AA sequence:RefSeq:WP_017292081.1
COORDINATES: similar to AA sequence:RefSeq:WP_008134952.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003297712.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_010219264.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015921705.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF018485.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018084043.1
COORDINATES: similar to AA sequence:RefSeq:WP_017961041.1
COORDINATES: similar to AA sequence:RefSeq:WP_014591889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013714844.1
COORDINATES: similar to AA sequence:RefSeq:WP_010969406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187983.1
COORDINATES: similar to AA sequence:RefSeq:WP_014187982.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018459024.1
COORDINATES: similar to AA sequence:RefSeq:WP_006397970.1
COORDINATES: similar to AA sequence:RefSeq:WP_003603845.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012975894.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006953768.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012568927.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568926.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568925.1
PepSY-associated TM helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007600987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014330228.1
COORDINATES: similar to AA sequence:RefSeq:WP_003167764.1
COORDINATES: protein motif:HMM:NF018738.2
COORDINATES: protein motif:HMM:NF024895.2
COORDINATES: similar to AA sequence:RefSeq:WP_004583173.1
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005902766.1
COORDINATES: protein motif:HMM:NF019260.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612204.1
COORDINATES: protein motif:HMM:TIGR01414.1
autotransporter outer membrane beta-barrel domain-containing protein
COORDINATES: protein motif:HMM:NF018482.2
invasion associated locus B family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012553437.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018301046.1
COORDINATES: similar to AA sequence:RefSeq:WP_002718823.1
COORDINATES: similar to AA sequence:RefSeq:WP_012334236.1
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012928.2
COORDINATES: similar to AA sequence:RefSeq:WP_007351704.1
tripartite tricarboxylate transporter substrate binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019341869.1
COORDINATES: similar to AA sequence:RefSeq:WP_006051493.1
mandelate racemase/muconate lactonizing enzyme family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013836279.1
COORDINATES: similar to AA sequence:RefSeq:WP_009522552.1
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007351700.1
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007351706.1
COORDINATES: similar to AA sequence:RefSeq:WP_007351702.1
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF018979.2
tripartite tricarboxylate transporter TctB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014242554.1
COORDINATES: similar to AA sequence:RefSeq:WP_018318527.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_017482585.1
COORDINATES: protein motif:HMM:NF013961.2
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_012780959.1
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_012112215.1
COORDINATES: similar to AA sequence:RefSeq:WP_016845127.1
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: similar to AA sequence:RefSeq:WP_007004982.1
COORDINATES: similar to AA sequence:RefSeq:WP_019198695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007680753.1
COORDINATES: similar to AA sequence:RefSeq:WP_012521471.1
COORDINATES: similar to AA sequence:RefSeq:YP_002516562.2
COORDINATES: protein motif:HMM:NF016648.2
COORDINATES: similar to AA sequence:RefSeq:WP_004272823.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198268.1
COORDINATES: protein motif:HMM:NF012422.2
COORDINATES: similar to AA sequence:RefSeq:WP_014108867.1
COORDINATES: protein motif:HMM:NF018662.2
COORDINATES: similar to AA sequence:RefSeq:WP_017667063.1
COORDINATES: protein motif:HMM:NF019604.2
COORDINATES: similar to AA sequence:RefSeq:WP_014994009.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568580.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568579.1
COORDINATES: similar to AA sequence:RefSeq:WP_009239664.1
COORDINATES: similar to AA sequence:RefSeq:WP_020599598.1
COORDINATES: similar to AA sequence:RefSeq:WP_005001717.1
COORDINATES: protein motif:HMM:NF019614.2
COORDINATES: similar to AA sequence:RefSeq:WP_011444591.1
COORDINATES: similar to AA sequence:RefSeq:YP_002517943.1
COORDINATES: similar to AA sequence:RefSeq:YP_002518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763567.1
COORDINATES: similar to AA sequence:RefSeq:WP_012255890.1
COORDINATES: similar to AA sequence:RefSeq:WP_015930925.1
COORDINATES: similar to AA sequence:RefSeq:WP_011441152.1
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011390310.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012565681.1
COORDINATES: protein motif:HMM:NF024904.2
COORDINATES: similar to AA sequence:RefSeq:WP_003525767.1
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013168146.1
COORDINATES: protein motif:HMM:NF024627.2
right-handed parallel beta-helix repeat-containing protein
COORDINATES: protein motif:HMM:NF024629.2
COORDINATES: protein motif:HMM:NF039244.1
COORDINATES: protein motif:HMM:NF013736.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012565781.1
COORDINATES: similar to AA sequence:RefSeq:WP_012778809.1
COORDINATES: similar to AA sequence:RefSeq:WP_014745473.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003592436.1
L-dopachrome tautomerase-related protein
COORDINATES: similar to AA sequence:RefSeq:WP_003240371.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016927707.1
COORDINATES: similar to AA sequence:RefSeq:WP_012589180.1
COORDINATES: similar to AA sequence:RefSeq:WP_008961575.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
This protein belongs to a clade of uncharacterized proteins related to peroxidases such as the alkylhydroperoxidase AhpD; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024260.2
COORDINATES: similar to AA sequence:RefSeq:WP_014249930.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF014385.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF037016.2
COORDINATES: similar to AA sequence:RefSeq:WP_009493992.1
COORDINATES: similar to AA sequence:RefSeq:WP_020655077.1
COORDINATES: similar to AA sequence:RefSeq:WP_011647168.1
COORDINATES: similar to AA sequence:RefSeq:WP_003454145.1
COORDINATES: protein motif:HMM:NF013188.2
GO:0015299 - solute:proton antiporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014198122.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188824.1
COORDINATES: similar to AA sequence:RefSeq:WP_013338213.1
COORDINATES: protein motif:HMM:NF017736.2
COORDINATES: protein motif:HMM:NF014567.2
hybrid sensor histidine kinase/response regulator
COORDINATES: similar to AA sequence:RefSeq:WP_020176707.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF020976.2
COORDINATES: similar to AA sequence:RefSeq:WP_012483072.1
COORDINATES: similar to AA sequence:RefSeq:WP_007818878.1
COORDINATES: similar to AA sequence:RefSeq:WP_008995956.1
COORDINATES: similar to AA sequence:RefSeq:WP_018146487.1
COORDINATES: protein motif:HMM:NF012925.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012631425.1
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF022082.2
COORDINATES: protein motif:HMM:NF015724.2
COORDINATES: protein motif:HMM:NF018688.2
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: similar to AA sequence:RefSeq:WP_008939416.1
COORDINATES: protein motif:HMM:TIGR02937.1
COORDINATES: similar to AA sequence:RefSeq:WP_006232839.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019995530.1
COORDINATES: similar to AA sequence:RefSeq:WP_012976210.1
COORDINATES: similar to AA sequence:RefSeq:WP_011483144.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007121017.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012975312.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008873565.1
COORDINATES: similar to AA sequence:RefSeq:WP_019401599.1
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_019997590.1
COORDINATES: similar to AA sequence:RefSeq:WP_018698430.1
COORDINATES: similar to AA sequence:RefSeq:WP_012645657.1
GO:0004125 - L-seryl-tRNASec selenium transferase activity [Evidence IEA]
GO:0016260 - selenocysteine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020094593.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0001514 - selenocysteine incorporation [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA]
selenocysteine-specific translation elongation factor
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: protein motif:HMM:NF015851.2
COORDINATES: similar to AA sequence:RefSeq:WP_009541337.1
4Fe-4S dicluster domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009541338.1
COORDINATES: protein motif:HMM:NF016750.2
COORDINATES: similar to AA sequence:RefSeq:WP_015259175.1
GO:0004756 - selenide, water dikinase activity [Evidence IEA]
GO:0001887 - selenium compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013270209.1
COORDINATES: similar to AA sequence:RefSeq:WP_009634437.1
COORDINATES: protein motif:HMM:NF013052.2
SET domain-containing protein-lysine N-methyltransferase
COORDINATES: protein motif:HMM:NF017078.2
COORDINATES: protein motif:HMM:NF024871.2
COORDINATES: protein motif:HMM:NF012573.2
type I secretion C-terminal target domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF014453.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF013672.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
polysaccharide deacetylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009492191.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014494386.1
COORDINATES: protein motif:HMM:NF019886.2
sigma factor-like helix-turn-helix DNA-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014189386.1
heavy metal-associated domain-containing protein
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012569109.1
COORDINATES: similar to AA sequence:RefSeq:WP_011142182.1
glucose-1-phosphate cytidylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012569111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012569106.1
COORDINATES: similar to AA sequence:RefSeq:WP_012569100.1
COORDINATES: similar to AA sequence:RefSeq:WP_007767119.1
COORDINATES: similar to AA sequence:RefSeq:WP_019644461.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701864.1
dicarboxylate/amino acid:cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_006578966.1
COORDINATES: similar to AA sequence:RefSeq:WP_020648440.1
COORDINATES: similar to AA sequence:RefSeq:WP_006578204.1
COORDINATES: similar to AA sequence:RefSeq:WP_008641531.1
COORDINATES: similar to AA sequence:RefSeq:WP_007882291.1
COORDINATES: similar to AA sequence:RefSeq:WP_020230385.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF020305.2
Mu transposase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017437.2
COORDINATES: similar to AA sequence:RefSeq:WP_012216873.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011970848.1
programmed frameshift; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612205.1
COORDINATES: similar to AA sequence:RefSeq:WP_019859989.1
COORDINATES: similar to AA sequence:RefSeq:WP_012972677.1
COORDINATES: similar to AA sequence:RefSeq:WP_011003443.1
COORDINATES: protein motif:HMM:NF020110.2
sensor histidine kinase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003596996.1
COORDINATES: similar to AA sequence:RefSeq:WP_019256312.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: similar to AA sequence:RefSeq:WP_003149800.1
cbb3-type cytochrome c oxidase subunit II
COORDINATES: protein motif:HMM:NF012264.2
COORDINATES: similar to AA sequence:RefSeq:WP_020423861.1
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01511.1
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: similar to AA sequence:RefSeq:WP_011661525.1
COORDINATES: similar to AA sequence:RefSeq:WP_005854060.1
COORDINATES: similar to AA sequence:RefSeq:WP_009541310.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015928977.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007005083.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_008944506.1
COORDINATES: similar to AA sequence:RefSeq:WP_002630328.1
COORDINATES: protein motif:HMM:NF016184.2
protein tyrosine phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010583581.1
COORDINATES: similar to AA sequence:RefSeq:WP_005004498.1
COORDINATES: similar to AA sequence:RefSeq:WP_014072611.1
COORDINATES: similar to AA sequence:RefSeq:WP_018321809.1
GO:0070069 - cytochrome complex [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0016669 - oxidoreductase activity, acting on a sulfur group of donors, cytochrome as acceptor [Evidence IEA]
GO:0019417 - sulfur oxidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012113546.1
thiosulfate oxidation carrier protein SoxY
COORDINATES: similar to AA sequence:RefSeq:WP_009503194.1
thiosulfate oxidation carrier complex protein SoxZ
COORDINATES: similar to AA sequence:RefSeq:WP_018316051.1
GO:0030145 - manganese ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018316052.1
GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008967369.1
COORDINATES: similar to AA sequence:RefSeq:WP_008960794.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_006937179.1
COORDINATES: similar to AA sequence:RefSeq:WP_008598657.1
COORDINATES: protein motif:HMM:NF014672.2
COORDINATES: similar to AA sequence:RefSeq:WP_019171648.1
COORDINATES: protein motif:HMM:NF026177.2
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009540312.1
COORDINATES: protein motif:HMM:NF015437.2
COORDINATES: similar to AA sequence:RefSeq:WP_015241498.1
COORDINATES: similar to AA sequence:RefSeq:WP_012522039.1
COORDINATES: protein motif:HMM:TIGR01941.1
GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
NADH:ubiquinone reductase (Na(+)-transporting) subunit F
COORDINATES: similar to AA sequence:RefSeq:WP_005185115.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568376.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568377.1
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012568379.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF023036.2
COORDINATES: similar to AA sequence:RefSeq:WP_008037698.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012269846.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
copper resistance system multicopper oxidase
COORDINATES: similar to AA sequence:RefSeq:WP_014745749.1
COORDINATES: protein motif:HMM:NF013695.2
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012751925.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: protein motif:HMM:TIGR01730.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: similar to AA sequence:RefSeq:WP_013525143.1
COORDINATES: similar to AA sequence:RefSeq:WP_009763213.1
methanol/ethanol family PQQ-dependent dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_012567721.1
COORDINATES: protein motif:HMM:NF014689.2
manganese efflux pump MntP family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006658462.1
COORDINATES: similar to AA sequence:RefSeq:WP_012554517.1
COORDINATES: similar to AA sequence:RefSeq:WP_012701101.1
COORDINATES: protein motif:HMM:NF024491.2
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014259418.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248177.1
COORDINATES: similar to AA sequence:RefSeq:WP_003896382.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589792.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
TIGR03571 family LLM class oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_018698650.1
COORDINATES: similar to AA sequence:RefSeq:WP_009541007.1
COORDINATES: similar to AA sequence:RefSeq:WP_009541004.1
GO:0009027 - tartrate dehydrogenase activity [Evidence IEA]
GO:0046395 - carboxylic acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018600329.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008833808.1
COORDINATES: similar to AA sequence:RefSeq:WP_012028727.1
COORDINATES: similar to AA sequence:RefSeq:WP_014747896.1
COORDINATES: protein motif:HMM:NF018408.2
COORDINATES: similar to AA sequence:RefSeq:WP_012567201.1
glutathionylspermidine synthase family protein
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: similar to AA sequence:RefSeq:WP_012523530.1
COORDINATES: protein motif:HMM:NF014763.2
COORDINATES: protein motif:HMM:NF015338.2
endonuclease/exonuclease/phosphatase family protein
COORDINATES: protein motif:HMM:NF012436.2
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014249313.1
COORDINATES: similar to AA sequence:RefSeq:WP_018043373.1
COORDINATES: protein motif:HMM:NF016291.2
COORDINATES: similar to AA sequence:RefSeq:WP_019461879.1
COORDINATES: similar to AA sequence:RefSeq:WP_011750607.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: protein motif:HMM:NF015131.2
COORDINATES: similar to AA sequence:RefSeq:WP_004209494.1
aspartate/tyrosine/aromatic aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008093924.1
COORDINATES: similar to AA sequence:RefSeq:WP_019923812.1
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: similar to AA sequence:RefSeq:WP_011251538.1
COORDINATES: similar to AA sequence:RefSeq:WP_016703074.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007671575.1
COORDINATES: similar to AA sequence:RefSeq:YP_002517488.1
COORDINATES: similar to AA sequence:RefSeq:WP_007712302.1
COORDINATES: similar to AA sequence:RefSeq:WP_004272352.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_005991266.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_011575334.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: protein motif:HMM:NF012863.2
COORDINATES: similar to AA sequence:RefSeq:WP_013533727.1
COORDINATES: protein motif:HMM:TIGR01782.1
COORDINATES: similar to AA sequence:RefSeq:WP_018149524.1
GO:0008675 - 2-dehydro-3-deoxy-phosphogluconate aldolase activity [Evidence IEA]; GO:0008700 - 4-hydroxy-2-oxoglutarate aldolase activity [Evidence IEA]
GO:0009255 - Entner-Doudoroff pathway through 6-phosphogluconate [Evidence IEA]; GO:0009084 - glutamine family amino acid biosynthetic process [Evidence IEA]
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: similar to AA sequence:RefSeq:YP_002516888.1
COORDINATES: similar to AA sequence:RefSeq:YP_002516887.1
COORDINATES: similar to AA sequence:RefSeq:WP_011642176.1
COORDINATES: similar to AA sequence:RefSeq:WP_018113199.1
COORDINATES: similar to AA sequence:RefSeq:WP_020400184.1
COORDINATES: similar to AA sequence:RefSeq:WP_004615017.1
COORDINATES: similar to AA sequence:RefSeq:WP_001027069.1
GO:0055085 - transmembrane transport [Evidence IEA]; GO:0042908 - xenobiotic transport [Evidence IEA]
multidrug efflux RND transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013913062.1
COORDINATES: similar to AA sequence:RefSeq:WP_012536372.1
GH3 auxin-responsive promoter family protein
COORDINATES: protein motif:HMM:NF013927.2
COORDINATES: similar to AA sequence:RefSeq:WP_012223674.1
COORDINATES: similar to AA sequence:RefSeq:WP_008939807.1
COORDINATES: similar to AA sequence:RefSeq:WP_014240897.1
COORDINATES: similar to AA sequence:RefSeq:WP_007438085.1
COORDINATES: similar to AA sequence:RefSeq:YP_002515450.1
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012566925.1
COORDINATES: similar to AA sequence:RefSeq:WP_007041259.1
osmoprotectant NAGGN system M42 family peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_005220241.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018260815.1
N-acetylglutaminylglutamine amidotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_009489482.1
COORDINATES: similar to AA sequence:RefSeq:WP_019461914.1
COORDINATES: protein motif:HMM:NF013694.2
COORDINATES: similar to AA sequence:RefSeq:WP_013165118.1
COORDINATES: protein motif:HMM:NF012245.2
GGDEF domain-containing phosphodiesterase
COORDINATES: similar to AA sequence:RefSeq:WP_011712521.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004274235.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_010116017.1
COORDINATES: similar to AA sequence:RefSeq:WP_018262906.1
COORDINATES: protein motif:HMM:NF013731.2
COORDINATES: protein motif:HMM:NF013867.2
protein-glutamate O-methyltransferase CheR
COORDINATES: protein motif:HMM:NF014207.2
flagellar hook-length control protein FliK
COORDINATES: protein motif:HMM:NF025229.2
COORDINATES: protein motif:HMM:NF024252.2
COORDINATES: similar to AA sequence:RefSeq:WP_012565460.1
GO:0009427 - bacterial-type flagellum basal body, distal rod, L ring [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]
flagellar basal body L-ring protein FlgH
COORDINATES: protein motif:HMM:TIGR03170.1
GO:0009428 - bacterial-type flagellum basal body, distal rod, P ring [Evidence IEA]
flagellar basal body P-ring formation chaperone FlgA
COORDINATES: similar to AA sequence:RefSeq:WP_012565458.1
GO:0009426 - bacterial-type flagellum basal body, distal rod [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012978223.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565454.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: protein motif:HMM:NF025033.2
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012565449.1
COORDINATES: similar to AA sequence:RefSeq:WP_012111477.1
flagellar basal body P-ring protein FlgI
COORDINATES: similar to AA sequence:RefSeq:WP_017504613.1
COORDINATES: protein motif:HMM:NF009435.1
GO:0044781 - bacterial-type flagellum organization [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014249883.1
COORDINATES: protein motif:HMM:NF025069.2
COORDINATES: similar to AA sequence:RefSeq:WP_012978251.1
COORDINATES: protein motif:HMM:NF012674.2
COORDINATES: similar to AA sequence:RefSeq:WP_012978253.1
GO:0009425 - bacterial-type flagellum basal body [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012565435.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]
GO:0003774 - cytoskeletal motor activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
flagellar hook-basal body complex protein FliE
COORDINATES: similar to AA sequence:RefSeq:WP_012565434.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009493589.1
COORDINATES: similar to AA sequence:RefSeq:WP_005416518.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199657.1
COORDINATES: protein motif:HMM:NF013478.2
GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014199659.1
COORDINATES: similar to AA sequence:RefSeq:WP_009541825.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009541824.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188354.1
lysophospholipid acyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007427312.1
COORDINATES: similar to AA sequence:RefSeq:WP_012974203.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_010686104.1
COORDINATES: similar to AA sequence:RefSeq:WP_015928531.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014247760.1
COORDINATES: similar to AA sequence:RefSeq:WP_008215510.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565414.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198729.1
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014241721.1
COORDINATES: similar to AA sequence:RefSeq:WP_020088132.1
COORDINATES: protein motif:HMM:NF025605.2
COORDINATES: protein motif:HMM:NF025611.2
COORDINATES: similar to AA sequence:RefSeq:WP_011920099.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
COORDINATES: similar to AA sequence:RefSeq:WP_015498222.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927585.1
COORDINATES: protein motif:HMM:NF025001.2
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:NF012360.2
COORDINATES: protein motif:HMM:NF013434.2
COORDINATES: similar to AA sequence:RefSeq:WP_009507354.1
COORDINATES: protein motif:HMM:NF015651.2
lysylphosphatidylglycerol synthase transmembrane domain-containing protein
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_011749831.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_014189972.1
COORDINATES: similar to AA sequence:RefSeq:WP_007866358.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_043767036.1
COORDINATES: protein motif:HMM:NF033594.2
COORDINATES: similar to AA sequence:RefSeq:WP_018209585.1
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF033550.5
COORDINATES: similar to AA sequence:RefSeq:WP_009756438.1
COORDINATES: similar to AA sequence:RefSeq:WP_004272952.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611592.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007293395.1
COORDINATES: similar to AA sequence:RefSeq:WP_011388302.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565420.1
GO:0009306 - protein secretion [Evidence IEA]
EscU/YscU/HrcU family type III secretion system export apparatus switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_011662985.1
The bacterial flagellar biogenesis protein FliP forms a type III secretion system (T3SS)-type pore required for flagellar assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.
flagellar type III secretion system pore protein FliP
COORDINATES: similar to AA sequence:RefSeq:WP_020399784.1
COORDINATES: protein motif:HMM:NF014196.2
COORDINATES: similar to AA sequence:RefSeq:WP_012978234.1
GO:0009431 - bacterial-type flagellum basal body, MS ring [Evidence IEA]
flagellar basal-body MS-ring/collar protein FliF
COORDINATES: protein motif:HMM:NF015693.2
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]; GO:0006935 - chemotaxis [Evidence IEA]
flagellar basal body-associated FliL family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019012776.1
COORDINATES: protein motif:HMM:NF039465.1
COORDINATES: protein motif:HMM:NF017119.2
COORDINATES: similar to AA sequence:RefSeq:WP_008946280.1
GO:0005507 - copper ion binding [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018928145.1
COORDINATES: protein motif:HMM:NF018933.2
COORDINATES: similar to AA sequence:RefSeq:YP_002517009.1
COORDINATES: similar to AA sequence:RefSeq:WP_014250137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004272810.1
BMP family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_009494559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004273507.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565491.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565492.1
GO:0008663 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity [Evidence IEA]; GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009166 - nucleotide catabolic process [Evidence IEA]
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
COORDINATES: protein motif:HMM:NF016874.2
COORDINATES: similar to AA sequence:RefSeq:WP_014189593.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945921.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004329 - formate-tetrahydrofolate ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018322911.1
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012566922.1
COORDINATES: similar to AA sequence:RefSeq:WP_018391401.1
COORDINATES: similar to AA sequence:RefSeq:WP_017594779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568564.1
GO:0008199 - ferric iron binding [Evidence IEA]; GO:0004322 - ferroxidase activity [Evidence IEA]
GO:0006880 - intracellular sequestering of iron ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012972723.1
GO:0009433 - bacterial-type flagellum basal body, C ring [Evidence IEA]
GO:0006935 - chemotaxis [Evidence IEA]; GO:0001539 - cilium or flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016855337.1
COORDINATES: protein motif:HMM:NF012385.2
sigma-54-dependent Fis family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014197524.1
COORDINATES: protein motif:HMM:NF016230.2
COORDINATES: similar to AA sequence:RefSeq:WP_015067427.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
Rho termination factor N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008965774.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004273359.1
branched-chain amino acid ABC transporter permease
COORDINATES: similar to AA sequence:RefSeq:WP_007876295.1
COORDINATES: similar to AA sequence:RefSeq:WP_014197556.1
COORDINATES: similar to AA sequence:RefSeq:WP_011237755.1
COORDINATES: protein motif:HMM:NF015585.2
COORDINATES: similar to AA sequence:RefSeq:WP_013168359.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188299.1
COORDINATES: similar to AA sequence:RefSeq:WP_001206197.1
GO:0019619 - 3,4-dihydroxybenzoate catabolic process [Evidence IEA]
HAMP domain-containing methyl-accepting chemotaxis protein
COORDINATES: similar to AA sequence:RefSeq:WP_019643858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007067804.1
TRAP transporter substrate-binding protein DctP
COORDINATES: similar to AA sequence:RefSeq:WP_009540998.1
COORDINATES: similar to AA sequence:RefSeq:WP_009175794.1
COORDINATES: similar to AA sequence:RefSeq:WP_008945593.1
COORDINATES: similar to AA sequence:RefSeq:WP_004299448.1
GO:0016034 - maleylacetoacetate isomerase activity [Evidence IEA]
GO:0006559 - L-phenylalanine catabolic process [Evidence IEA]; GO:0006572 - tyrosine catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013106421.1
COORDINATES: protein motif:HMM:NF016513.2
COORDINATES: similar to AA sequence:RefSeq:WP_006158036.1
COORDINATES: similar to AA sequence:RefSeq:WP_011993042.1
COORDINATES: similar to AA sequence:RefSeq:WP_008961715.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_012926925.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_014188912.1
COORDINATES: similar to AA sequence:RefSeq:WP_011787146.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018316234.1
COORDINATES: similar to AA sequence:RefSeq:WP_015688820.1
phytanoyl-CoA dioxygenase family protein
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: similar to AA sequence:RefSeq:WP_011909283.1
COORDINATES: similar to AA sequence:RefSeq:WP_019015137.1
COORDINATES: similar to AA sequence:RefSeq:WP_017907194.1
COORDINATES: similar to AA sequence:RefSeq:WP_018916493.1
COORDINATES: similar to AA sequence:RefSeq:WP_020680231.1
COORDINATES: similar to AA sequence:RefSeq:WP_011330957.1
class III extradiol ring-cleavage dioxygenase
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: similar to AA sequence:RefSeq:WP_012977372.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018408400.1
COORDINATES: similar to AA sequence:RefSeq:WP_010218750.1
COORDINATES: similar to AA sequence:RefSeq:WP_018046053.1
COORDINATES: protein motif:HMM:NF012786.2
COORDINATES: similar to AA sequence:RefSeq:WP_019459327.1
COORDINATES: protein motif:HMM:NF021134.2
COORDINATES: protein motif:HMM:NF025182.2
COORDINATES: protein motif:HMM:NF024950.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF013714.2
COORDINATES: protein motif:HMM:NF006088.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007436428.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013648.2
COORDINATES: similar to AA sequence:RefSeq:WP_002970131.1
COORDINATES: similar to AA sequence:RefSeq:WP_012565555.1
COORDINATES: similar to AA sequence:RefSeq:WP_013531119.1
GO:0043752 - adenosylcobinamide kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_014247582.1
GO:0008817 - cob(I)yrinic acid a,c-diamide adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_012456952.1
COORDINATES: similar to AA sequence:RefSeq:WP_019401238.1
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: similar to AA sequence:RefSeq:WP_011927726.1
GO:0048472 - threonine-phosphate decarboxylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014237247.1
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: similar to AA sequence:RefSeq:WP_008956388.1
COORDINATES: similar to AA sequence:RefSeq:WP_008967174.1
COORDINATES: protein motif:HMM:NF015867.2
COORDINATES: protein motif:HMM:NF012485.2
COORDINATES: protein motif:HMM:NF015891.2
COORDINATES: protein motif:HMM:NF013632.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF040576.1
COORDINATES: similar to AA sequence:RefSeq:WP_014779214.1
COORDINATES: protein motif:HMM:NF023444.2
GO:0015627 - type II protein secretion system complex [Evidence IEA]
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013031524.1
type II secretion system major pseudopilin GspG
COORDINATES: similar to AA sequence:RefSeq:WP_076611358.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019352.2
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: similar to AA sequence:RefSeq:WP_010263388.1
twin-arginine translocase TatA/TatE family subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018230143.1
COORDINATES: similar to AA sequence:RefSeq:WP_013819125.1
COORDINATES: similar to AA sequence:RefSeq:WP_009493164.1
COORDINATES: similar to AA sequence:RefSeq:WP_020093486.1
COORDINATES: similar to AA sequence:RefSeq:WP_020709150.1
COORDINATES: similar to AA sequence:RefSeq:WP_014242298.1
COORDINATES: similar to AA sequence:RefSeq:WP_008943708.1
GO:0003839 - gamma-glutamylcyclotransferase activity [Evidence IEA]
GO:0006751 - glutathione catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013590164.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567293.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_011314249.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006610461.1
PAS domain-containing methyl-accepting chemotaxis protein
COORDINATES: protein motif:HMM:NF012876.2
COORDINATES: protein motif:HMM:NF017077.2
COORDINATES: protein motif:HMM:TIGR00765.1
YihY/virulence factor BrkB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010910228.1
COORDINATES: similar to AA sequence:RefSeq:WP_015670058.1
COORDINATES: similar to AA sequence:RefSeq:WP_009539280.1
COORDINATES: similar to AA sequence:RefSeq:WP_009819810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008138590.1
COORDINATES: similar to AA sequence:RefSeq:WP_014743941.1
GO:0022877 - protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
fructose-specific PTS transporter subunit EIIC
COORDINATES: similar to AA sequence:RefSeq:WP_007675448.1
GO:0008662 - 1-phosphofructokinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003471263.1
GO:0008965 - phosphoenolpyruvate-protein phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]; GO:0006808 - regulation of nitrogen utilization [Evidence IEA]
phosphoenolpyruvate--protein phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_007675452.1
COORDINATES: protein motif:HMM:NF022526.2
COORDINATES: similar to AA sequence:RefSeq:WP_014242255.1
COORDINATES: similar to AA sequence:RefSeq:WP_018389547.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189453.1
COORDINATES: similar to AA sequence:RefSeq:WP_014748171.1
COORDINATES: similar to AA sequence:RefSeq:WP_015765153.1
COORDINATES: similar to AA sequence:RefSeq:WP_011615914.1
COORDINATES: similar to AA sequence:RefSeq:WP_012974434.1
COORDINATES: similar to AA sequence:RefSeq:WP_013525145.1
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: similar to AA sequence:RefSeq:WP_006635068.1
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF020137.2
GO:0005615 - extracellular space [Evidence IEA]
GO:0005509 - calcium ion binding [Evidence IEA]
M10 family metallopeptidase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006102972.1
COORDINATES: similar to AA sequence:RefSeq:WP_001199800.1
COORDINATES: similar to AA sequence:RefSeq:WP_020009095.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02532.1
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: similar to AA sequence:RefSeq:WP_002812958.1
COORDINATES: protein motif:HMM:NF024946.2
COORDINATES: protein motif:HMM:NF019351.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008963278.1
COORDINATES: protein motif:HMM:TIGR02517.1
COORDINATES: protein motif:HMM:NF017277.2
COORDINATES: protein motif:HMM:NF015377.2
COORDINATES: similar to AA sequence:RefSeq:WP_012646874.1
COORDINATES: similar to AA sequence:RefSeq:WP_019953372.1
COORDINATES: similar to AA sequence:RefSeq:WP_017482494.1
COORDINATES: similar to AA sequence:RefSeq:WP_019404673.1
COORDINATES: similar to AA sequence:RefSeq:WP_013503045.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006614577.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015466.2
COORDINATES: similar to AA sequence:RefSeq:WP_002924366.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198040.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF019335.2
TonB-dependent receptor plug domain-containing protein
COORDINATES: protein motif:HMM:NF012356.2
COORDINATES: similar to AA sequence:RefSeq:WP_004271513.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568110.1
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012567306.1
COORDINATES: similar to AA sequence:RefSeq:WP_013865505.1
COORDINATES: similar to AA sequence:RefSeq:WP_014239415.1
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: similar to AA sequence:RefSeq:WP_020050887.1
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007539776.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012567583.1
COORDINATES: similar to AA sequence:RefSeq:WP_009208506.1
COORDINATES: similar to AA sequence:RefSeq:WP_015929050.1
COORDINATES: similar to AA sequence:RefSeq:WP_014246976.1
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:NF004792.0
COORDINATES: protein motif:HMM:NF013936.2
COORDINATES: similar to AA sequence:RefSeq:WP_012569070.1
This protein belongs to the uracil DNA glycosylase superfamily, members of which act in excision repair of DNA. However, it belongs more specifically to UdgX branch, whose founding member was found to bind uracil in DNA (where it does not belong), without cleaving it, appears to promote DNA repair by a pathway involving RecA, rather than base excision; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012569067.1
COORDINATES: similar to AA sequence:RefSeq:WP_014198387.1
COORDINATES: similar to AA sequence:RefSeq:WP_014766392.1
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
3-isopropylmalate dehydratase large subunit
COORDINATES: similar to AA sequence:RefSeq:WP_020178669.1
COORDINATES: similar to AA sequence:RefSeq:WP_007296670.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_009831443.1
RNA-binding S4 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011387835.1
COORDINATES: similar to AA sequence:RefSeq:WP_012567573.1
COORDINATES: protein motif:HMM:NF018508.2
COORDINATES: protein motif:HMM:NF023338.2
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_014625088.1
COORDINATES: similar to AA sequence:RefSeq:WP_012568371.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012972907.1
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF013933.2
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014335.2
COORDINATES: similar to AA sequence:RefSeq:WP_019407115.1
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: similar to AA sequence:RefSeq:WP_014242478.1
COORDINATES: similar to AA sequence:RefSeq:WP_015459056.1
COORDINATES: protein motif:HMM:NF015912.2
RNA polymerase sigma factor region1.1 domain-containing protein
COORDINATES: protein motif:HMM:NF023984.2
COORDINATES: similar to AA sequence:RefSeq:WP_019831225.1
COORDINATES: similar to AA sequence:RefSeq:WP_013166372.1
dicarboxylate transporter/tellurite-resistance protein TehA
COORDINATES: similar to AA sequence:RefSeq:WP_006249746.1
COORDINATES: similar to AA sequence:RefSeq:WP_013341041.1
COORDINATES: similar to AA sequence:RefSeq:WP_015927739.1
COORDINATES: similar to AA sequence:RefSeq:WP_012321363.1
COORDINATES: similar to AA sequence:RefSeq:WP_020201653.1
COORDINATES: similar to AA sequence:RefSeq:WP_006020190.1
Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008124210.1
COORDINATES: similar to AA sequence:RefSeq:WP_007822880.1
COORDINATES: similar to AA sequence:RefSeq:WP_014189154.1
COORDINATES: similar to AA sequence:RefSeq:WP_008274946.1
COORDINATES: similar to AA sequence:RefSeq:WP_012606213.1
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:TIGR04433.1
COORDINATES: similar to AA sequence:RefSeq:WP_010474427.1
homocysteine S-methyltransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002632301.1
COORDINATES: similar to AA sequence:RefSeq:WP_002615149.1
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024808.2
COORDINATES: similar to AA sequence:RefSeq:WP_007088445.1
COORDINATES: similar to AA sequence:RefSeq:WP_016914518.1
COORDINATES: similar to AA sequence:RefSeq:WP_010914575.1
COORDINATES: similar to AA sequence:RefSeq:WP_008955303.1
COORDINATES: protein motif:HMM:NF013179.2
COORDINATES: similar to AA sequence:RefSeq:WP_020591714.1
COORDINATES: similar to AA sequence:RefSeq:WP_011941910.1
GO:0008812 - choline dehydrogenase activity [Evidence IEA]
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015451808.1
GO:0008802 - betaine-aldehyde dehydrogenase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF001978.0
GO:0019285 - glycine betaine biosynthetic process from choline [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006934323.1
choline ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_018387682.1
choline ABC transporter permease subunit
COORDINATES: similar to AA sequence:RefSeq:WP_019727050.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0015220 - choline transmembrane transporter activity [Evidence IEA]
GO:0015871 - choline transport [Evidence IEA]
choline ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014198913.1
COORDINATES: similar to AA sequence:RefSeq:WP_011512087.1
COORDINATES: similar to AA sequence:RefSeq:WP_018229710.1
pyridoxamine 5'-phosphate oxidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018183800.1
COORDINATES: similar to AA sequence:RefSeq:WP_019517325.1
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004579186.1
COORDINATES: similar to AA sequence:RefSeq:WP_008613384.1
COORDINATES: similar to AA sequence:RefSeq:WP_006763850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004579669.1
COORDINATES: similar to AA sequence:RefSeq:WP_009337067.1
COORDINATES: similar to AA sequence:RefSeq:WP_012837589.1
COORDINATES: protein motif:HMM:NF015737.2
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011502357.1
class II aldolase/adducin family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019446010.1
COORDINATES: similar to AA sequence:RefSeq:WP_016919874.1
COORDINATES: protein motif:HMM:NF012707.2
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011092410.1
COORDINATES: similar to AA sequence:RefSeq:WP_009114358.1
COORDINATES: similar to AA sequence:RefSeq:WP_012566380.1
COORDINATES: protein motif:HMM:NF021589.2
COORDINATES: similar to AA sequence:RefSeq:WP_019020285.1
SMP-30/gluconolactonase/LRE family protein