Planococcus lenghuensis strain Y42 plasmid unnamed3, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
The complete genomic sequence of a novel cold adapted crude oil-degrading bacterium Planococcus qaidamina Y42
Submitted (07-FEB-2017) Key Laboratory of Extreme Environmental Microbiol Resources and Engineering, Northwest Institute of Eco-Environment and Resources,CAS, NO. 320 chengguan donggang West Road, Lanzhou, Gansu 730030, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019643.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 04:32:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,188\nCDSs (total) :: 4,087\nGenes (coding) :: 4,002\nCDSs (with protein) :: 4,002\nGenes (RNA) :: 101\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 40 of 85\nPseudo Genes (incomplete) :: 39 of 85\nPseudo Genes (internal stop) :: 18 of 85\nPseudo Genes (multiple problems) :: 12 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024244.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009536076.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_000808211.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008498534.1
COORDINATES: similar to AA sequence:RefSeq:WP_006837151.1
COORDINATES: protein motif:HMM:NF022261.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2