Planococcus lenghuensis strain Y42 plasmid unnamed2, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Planococcaceae; Planococcus.
The complete genomic sequence of a novel cold adapted crude oil-degrading bacterium Planococcus qaidamina Y42
Submitted (07-FEB-2017) Key Laboratory of Extreme Environmental Microbiol Resources and Engineering, Northwest Institute of Eco-Environment and Resources,CAS, NO. 320 chengguan donggang West Road, Lanzhou, Gansu 730030, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP019642.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SPAdes v. 3.5.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 300.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/29/2022 04:32:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,188\nCDSs (total) :: 4,087\nGenes (coding) :: 4,002\nCDSs (with protein) :: 4,002\nGenes (RNA) :: 101\nrRNAs :: 9, 9, 9 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 9, 9 (5S, 16S, 23S)\ntRNAs :: 70\nncRNAs :: 4\nPseudo Genes (total) :: 85\nCDSs (without protein) :: 85\nPseudo Genes (ambiguous residues) :: 0 of 85\nPseudo Genes (frameshifted) :: 40 of 85\nPseudo Genes (incomplete) :: 39 of 85\nPseudo Genes (internal stop) :: 18 of 85\nPseudo Genes (multiple problems) :: 12 of 85\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013488526.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016203311.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF039645.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024642.2
COORDINATES: protein motif:HMM:NF024573.2
COORDINATES: similar to AA sequence:RefSeq:WP_010900089.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014479891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014664735.1
COORDINATES: protein motif:HMM:NF018485.2
COORDINATES: similar to AA sequence:RefSeq:WP_007084376.1
COORDINATES: similar to AA sequence:RefSeq:WP_003557265.1
COORDINATES: similar to AA sequence:RefSeq:WP_017473124.1
CGNR zinc finger domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017473123.1
COORDINATES: similar to AA sequence:RefSeq:WP_018395202.1
COORDINATES: protein motif:HMM:NF019241.2
COORDINATES: similar to AA sequence:RefSeq:WP_019413043.1
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_016205473.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828194.1
COORDINATES: protein motif:HMM:NF033517.1
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020059361.1
COORDINATES: similar to AA sequence:RefSeq:WP_019378885.1
COORDINATES: protein motif:HMM:NF036772.2
COORDINATES: similar to AA sequence:RefSeq:WP_017186671.1
COORDINATES: similar to AA sequence:RefSeq:WP_006831240.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010194190.1
COORDINATES: similar to AA sequence:RefSeq:WP_002127180.1
COORDINATES: similar to AA sequence:RefSeq:WP_008429671.1
COORDINATES: similar to AA sequence:RefSeq:WP_013058292.1
COORDINATES: similar to AA sequence:RefSeq:WP_003245536.1
COORDINATES: similar to AA sequence:RefSeq:WP_020063252.1
COORDINATES: similar to AA sequence:RefSeq:WP_020061064.1
COORDINATES: similar to AA sequence:RefSeq:WP_005550551.1
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002172482.1
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF020438.2
COORDINATES: similar to AA sequence:RefSeq:WP_009497630.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828293.1
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: protein motif:HMM:NF025027.2
COORDINATES: similar to AA sequence:RefSeq:WP_003353526.1
PBECR2 nuclease fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009361864.1
COORDINATES: similar to AA sequence:RefSeq:WP_018930900.1
COORDINATES: similar to AA sequence:RefSeq:WP_008498846.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF015354.2
COORDINATES: similar to AA sequence:RefSeq:WP_017895783.1
COORDINATES: similar to AA sequence:RefSeq:WP_018395686.1
COORDINATES: protein motif:HMM:NF024949.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF018653.2
COORDINATES: similar to AA sequence:RefSeq:WP_000495110.1
COORDINATES: similar to AA sequence:RefSeq:WP_008498890.1
COORDINATES: similar to AA sequence:RefSeq:WP_017380619.1
COORDINATES: similar to AA sequence:RefSeq:WP_017380618.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008498885.1
COORDINATES: protein motif:HMM:NF015947.2
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_008428002.1
COORDINATES: similar to AA sequence:RefSeq:WP_006830725.1
AlwI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_008299052.1
COORDINATES: similar to AA sequence:RefSeq:WP_013486832.1
COORDINATES: similar to AA sequence:RefSeq:WP_017762412.1
COORDINATES: protein motif:HMM:NF039412.1
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_014652742.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: protein motif:HMM:NF013263.2
bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
COORDINATES: protein motif:HMM:TIGR00813.1
COORDINATES: protein motif:HMM:NF013567.2
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:NF012488.2
aminotransferase class V-fold PLP-dependent enzyme