Acidisarcina polymorpha strain SBC82 plasmid pACPOL3, complete sequence.
Bacteria; Acidobacteriota; Terriglobia; Terriglobales; Acidobacteriaceae; Acidisarcina.
Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
Erratum:[Front Microbiol. 2022 Feb 24;13:856396. PMID: 35283817] Publication Status: Online-Only
Submitted (09-JUL-2018) Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP030844.1.\nBacteria and source DNA available from Dr. S.N. Dedysh.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: Newbler v. 3.0; npScarf v. 1.0\nExpected Final Version :: yes\nGenome Coverage :: 124.0x\nSequencing Technology :: 454; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 14:33:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,307\nCDSs (total) :: 6,251\nGenes (coding) :: 6,145\nCDSs (with protein) :: 6,145\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 48 of 106\nPseudo Genes (incomplete) :: 74 of 106\nPseudo Genes (internal stop) :: 18 of 106\nPseudo Genes (multiple problems) :: 29 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Nadym region of northwest Siberia, Yamalo-Nenets AO
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03696.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010306554.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025120.2
COORDINATES: protein motif:HMM:NF013740.2
COORDINATES: similar to AA sequence:RefSeq:WP_010955256.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_013573101.1
COORDINATES: protein motif:HMM:NF037199.2
COORDINATES: similar to AA sequence:RefSeq:WP_006495615.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_020707893.1
COORDINATES: similar to AA sequence:RefSeq:WP_014006133.1
carboxymuconolactone decarboxylase family protein
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014786680.1
COORDINATES: similar to AA sequence:RefSeq:WP_007741253.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007128372.1
COORDINATES: protein motif:HMM:NF012801.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020713595.1
COORDINATES: protein motif:HMM:NF015649.2
COORDINATES: protein motif:HMM:NF022623.2
COORDINATES: similar to AA sequence:RefSeq:WP_020722173.1
COORDINATES: similar to AA sequence:RefSeq:WP_020717466.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014786417.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015535 - fucose:proton symporter activity [Evidence IEA]
GO:0015756 - fucose transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020606079.1
zinc-binding alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020710989.1
COORDINATES: protein motif:HMM:NF013375.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020720913.1
COORDINATES: similar to AA sequence:RefSeq:WP_013580898.1
COORDINATES: similar to AA sequence:RefSeq:WP_013568891.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013580895.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013252.2
COORDINATES: protein motif:HMM:NF024865.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:NF025292.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
lipocalin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012333997.1
COORDINATES: similar to AA sequence:RefSeq:WP_019734924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006162686.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: similar to AA sequence:RefSeq:WP_015244198.1
COORDINATES: similar to AA sequence:RefSeq:WP_015249734.1
COORDINATES: similar to AA sequence:RefSeq:WP_020473560.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_012384817.1
COORDINATES: similar to AA sequence:RefSeq:WP_013568284.1
COORDINATES: protein motif:HMM:NF019350.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: protein motif:HMM:NF019886.2
sigma-70 region 4 domain-containing protein
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF033542.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02771.1
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0008233 - peptidase activity [Evidence IEA]
conjugative transfer signal peptidase TraF
COORDINATES: protein motif:HMM:NF014566.2
CPBP family intramembrane metalloprotease
COORDINATES: protein motif:HMM:NF016836.2
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF016670.2
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: protein motif:HMM:NF015487.2
GO:0009291 - unidirectional conjugation [Evidence IEA]
P-type conjugative transfer protein TrbG
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:TIGR02783.1
P-type conjugative transfer protein TrbL
COORDINATES: protein motif:HMM:TIGR02780.1
P-type conjugative transfer protein TrbJ
COORDINATES: protein motif:HMM:NF015118.2
COORDINATES: protein motif:HMM:NF010395.0
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF012652.2
COORDINATES: similar to AA sequence:RefSeq:WP_014786542.1
COORDINATES: similar to AA sequence:RefSeq:WP_014341989.1
COORDINATES: similar to AA sequence:RefSeq:WP_014786605.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020706869.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_047389784.1
COORDINATES: similar to AA sequence:RefSeq:WP_013579695.1
COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
COORDINATES: protein motif:HMM:NF015824.2