Acidisarcina polymorpha strain SBC82 plasmid pACPOL4, complete sequence.
Bacteria; Acidobacteriota; Terriglobia; Terriglobales; Acidobacteriaceae; Acidisarcina.
Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
Erratum:[Front Microbiol. 2022 Feb 24;13:856396. PMID: 35283817] Publication Status: Online-Only
Submitted (09-JUL-2018) Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP030843.1.\nBacteria and source DNA available from Dr. S.N. Dedysh.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: Newbler v. 3.0; npScarf v. 1.0\nExpected Final Version :: yes\nGenome Coverage :: 124.0x\nSequencing Technology :: 454; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 14:33:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,307\nCDSs (total) :: 6,251\nGenes (coding) :: 6,145\nCDSs (with protein) :: 6,145\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 48 of 106\nPseudo Genes (incomplete) :: 74 of 106\nPseudo Genes (internal stop) :: 18 of 106\nPseudo Genes (multiple problems) :: 29 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Nadym region of northwest Siberia, Yamalo-Nenets AO
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:TIGR03696.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
RHS repeat-associated core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008920893.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015824.2
COORDINATES: similar to AA sequence:RefSeq:WP_004091417.1
COORDINATES: similar to AA sequence:RefSeq:WP_013579695.1
COORDINATES: similar to AA sequence:RefSeq:WP_047389784.1
COORDINATES: protein motif:HMM:NF020387.2
COORDINATES: similar to AA sequence:RefSeq:WP_020706869.1
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: protein motif:HMM:NF024929.2
COORDINATES: similar to AA sequence:RefSeq:WP_014786607.1
COORDINATES: protein motif:HMM:NF012366.2
chitobiase/beta-hexosaminidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012464.2
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025341.2
COORDINATES: similar to AA sequence:RefSeq:WP_020710100.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014786605.1
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: similar to AA sequence:RefSeq:WP_015325864.1
COORDINATES: protein motif:HMM:NF013676.2
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF016876.2
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_014266102.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011842133.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_013567768.1
COORDINATES: similar to AA sequence:RefSeq:WP_000824704.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:TIGR01180.1
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: similar to AA sequence:RefSeq:WP_013338212.1
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_018620321.1
COORDINATES: similar to AA sequence:RefSeq:WP_020712688.1
COORDINATES: protein motif:HMM:NF014010.2
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015918564.1
COORDINATES: protein motif:HMM:NF019229.2
COORDINATES: protein motif:HMM:NF027814.2
COORDINATES: similar to AA sequence:RefSeq:WP_019092528.1
COORDINATES: protein motif:HMM:NF024686.2
COORDINATES: similar to AA sequence:RefSeq:WP_014786408.1
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: similar to AA sequence:RefSeq:WP_007688715.1
COORDINATES: similar to AA sequence:RefSeq:WP_006949122.1
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024934.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011349270.1
COORDINATES: protein motif:HMM:NF025049.2
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:TIGR00621.2
COORDINATES: similar to AA sequence:RefSeq:WP_020720913.1
COORDINATES: protein motif:HMM:TIGR02246.1
COORDINATES: protein motif:HMM:NF012698.2
COORDINATES: similar to AA sequence:RefSeq:WP_012926317.1
COORDINATES: protein motif:HMM:NF023431.2
COORDINATES: similar to AA sequence:RefSeq:WP_019087267.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018445319.1
COORDINATES: similar to AA sequence:RefSeq:WP_007557785.1
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016614 - oxidoreductase activity, acting on CH-OH group of donors [Evidence IEA]
GMC family oxidoreductase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014263655.1
COORDINATES: similar to AA sequence:RefSeq:WP_002650863.1
COORDINATES: similar to AA sequence:RefSeq:WP_015247128.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020715067.1
COORDINATES: similar to AA sequence:RefSeq:WP_013581461.1
COORDINATES: similar to AA sequence:RefSeq:WP_018990218.1
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: similar to AA sequence:RefSeq:WP_011687283.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018264170.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0004672 - protein kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF028103.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: similar to AA sequence:RefSeq:WP_013697136.1
COORDINATES: similar to AA sequence:RefSeq:WP_008904918.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013635075.1
COORDINATES: similar to AA sequence:RefSeq:WP_013567923.1
COORDINATES: similar to AA sequence:RefSeq:WP_020706842.1
COORDINATES: similar to AA sequence:RefSeq:WP_011142671.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015469132.1
COORDINATES: protein motif:HMM:NF025006.2
COORDINATES: similar to AA sequence:RefSeq:WP_005918986.1
COORDINATES: similar to AA sequence:RefSeq:WP_020716240.1
GO:0004559 - alpha-mannosidase activity [Evidence IEA]
GO:0006013 - mannose metabolic process [Evidence IEA]
glycoside hydrolase family 38 C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020715511.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015616.2
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014265891.1
COORDINATES: protein motif:HMM:NF012312.2
COORDINATES: similar to AA sequence:RefSeq:WP_013573305.1
COORDINATES: similar to AA sequence:RefSeq:WP_011399999.1
COORDINATES: similar to AA sequence:RefSeq:WP_020715943.1
GO:0005267 - potassium channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018684.2
COORDINATES: protein motif:HMM:NF025433.2
LssY C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012145784.1
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_006402677.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008378942.1
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: protein motif:HMM:NF024602.2
COORDINATES: protein motif:HMM:NF014376.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF025397.2
COORDINATES: similar to AA sequence:RefSeq:WP_076612088.1
COORDINATES: protein motif:HMM:NF027116.2
COORDINATES: protein motif:HMM:NF019149.2
COORDINATES: protein motif:HMM:NF039408.1
COORDINATES: protein motif:HMM:NF033587.1
COORDINATES: similar to AA sequence:RefSeq:WP_007919242.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: similar to AA sequence:RefSeq:WP_020706930.1
COORDINATES: similar to AA sequence:RefSeq:WP_020709689.1
COORDINATES: similar to AA sequence:RefSeq:WP_014265746.1
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF039485.1
COORDINATES: similar to AA sequence:RefSeq:WP_012680884.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014006133.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_020707893.1
COORDINATES: protein motif:HMM:NF014068.2
COORDINATES: similar to AA sequence:RefSeq:WP_006495615.1
COORDINATES: protein motif:HMM:NF037199.2
COORDINATES: similar to AA sequence:RefSeq:WP_013573101.1
COORDINATES: similar to AA sequence:RefSeq:WP_010955256.1
COORDINATES: protein motif:HMM:NF013740.2