Acidisarcina polymorpha strain SBC82 plasmid pACPOL2, complete sequence.
Bacteria; Acidobacteriota; Terriglobia; Terriglobales; Acidobacteriaceae; Acidisarcina.
Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
Erratum:[Front Microbiol. 2022 Feb 24;13:856396. PMID: 35283817] Publication Status: Online-Only
Submitted (09-JUL-2018) Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP030842.1.\nBacteria and source DNA available from Dr. S.N. Dedysh.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: Newbler v. 3.0; npScarf v. 1.0\nExpected Final Version :: yes\nGenome Coverage :: 124.0x\nSequencing Technology :: 454; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 14:33:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,307\nCDSs (total) :: 6,251\nGenes (coding) :: 6,145\nCDSs (with protein) :: 6,145\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 48 of 106\nPseudo Genes (incomplete) :: 74 of 106\nPseudo Genes (internal stop) :: 18 of 106\nPseudo Genes (multiple problems) :: 29 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Nadym region of northwest Siberia, Yamalo-Nenets AO
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013573103.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF021637.2
COORDINATES: protein motif:HMM:NF012257.2
cyclic nucleotide-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_018419524.1
COORDINATES: similar to AA sequence:RefSeq:WP_014263744.1
COORDINATES: similar to AA sequence:RefSeq:WP_012365488.1
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_020708441.1
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: protein motif:HMM:NF012894.2
COORDINATES: similar to AA sequence:RefSeq:WP_008346666.1
COORDINATES: protein motif:HMM:NF022789.2
COORDINATES: similar to AA sequence:RefSeq:WP_014493249.1
COORDINATES: protein motif:HMM:NF012922.2
COORDINATES: similar to AA sequence:RefSeq:WP_014263654.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
CGNR zinc finger domain-containing protein
COORDINATES: protein motif:HMM:NF025120.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007406331.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: protein motif:HMM:NF019322.2
COORDINATES: similar to AA sequence:RefSeq:WP_013700100.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000824704.1
COORDINATES: protein motif:HMM:NF023165.2
COORDINATES: protein motif:HMM:NF025389.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF016241.2
COORDINATES: similar to AA sequence:RefSeq:WP_003880833.1
phospholipase D-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002714141.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012516.2
GO:0004650 - polygalacturonase activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02284.1
COORDINATES: similar to AA sequence:RefSeq:WP_008920893.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009476145.1
COORDINATES: protein motif:HMM:NF027952.2
COORDINATES: similar to AA sequence:RefSeq:WP_018826048.1
COORDINATES: similar to AA sequence:RefSeq:WP_006949122.1
COORDINATES: similar to AA sequence:RefSeq:WP_011842133.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_020714526.1
COORDINATES: protein motif:HMM:NF020390.2
COORDINATES: similar to AA sequence:RefSeq:WP_013573186.1
COORDINATES: protein motif:HMM:NF024934.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016430.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014266102.1
Crp/Fnr family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013567768.1
COORDINATES: similar to AA sequence:RefSeq:WP_015898345.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017758.2
COORDINATES: protein motif:HMM:NF021523.2
COORDINATES: similar to AA sequence:RefSeq:WP_003613487.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012824483.1
COORDINATES: similar to AA sequence:RefSeq:WP_014266101.1
HAMP domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_076611840.1
GO:0015074 - DNA integration [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020262505.1
COORDINATES: similar to AA sequence:RefSeq:WP_020707672.1
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:TIGR00254.1
COORDINATES: similar to AA sequence:RefSeq:WP_020716832.1
COORDINATES: similar to AA sequence:RefSeq:WP_015896194.1
GO:0006378 - mRNA polyadenylation [Evidence IEA]; GO:0016070 - RNA metabolic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_013580898.1
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
COORDINATES: similar to AA sequence:RefSeq:WP_014263547.1
PDDEXK nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014786605.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF024929.2