Acidisarcina polymorpha strain SBC82 plasmid pACPOL1, complete sequence.
Bacteria; Acidobacteriota; Terriglobia; Terriglobales; Acidobacteriaceae; Acidisarcina.
Hydrolytic Capabilities as a Key to Environmental Success: Chitinolytic and Cellulolytic Acidobacteria From Acidic Sub-arctic Soils and Boreal Peatlands
Erratum:[Front Microbiol. 2022 Feb 24;13:856396. PMID: 35283817] Publication Status: Online-Only
Submitted (09-JUL-2018) Institute of Bioengineering, Research Center of Biotechnology of the Russian Academy of Sciences, Moscow 119071, Russia
REFSEQ INFORMATION: The reference sequence is identical to\nCP030841.1.\nBacteria and source DNA available from Dr. S.N. Dedysh.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: JUN-2018\nAssembly Method :: Newbler v. 3.0; npScarf v. 1.0\nExpected Final Version :: yes\nGenome Coverage :: 124.0x\nSequencing Technology :: 454; Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/08/2023 14:33:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,307\nCDSs (total) :: 6,251\nGenes (coding) :: 6,145\nCDSs (with protein) :: 6,145\nGenes (RNA) :: 56\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 3\nPseudo Genes (total) :: 106\nCDSs (without protein) :: 106\nPseudo Genes (ambiguous residues) :: 0 of 106\nPseudo Genes (frameshifted) :: 48 of 106\nPseudo Genes (incomplete) :: 74 of 106\nPseudo Genes (internal stop) :: 18 of 106\nPseudo Genes (multiple problems) :: 29 of 106\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Russia: Nadym region of northwest Siberia, Yamalo-Nenets AO
COORDINATES: similar to AA sequence:RefSeq:WP_012606256.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF033587.1
GO:0004803 - transposase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
leucine-rich repeat domain-containing protein
COORDINATES: protein motif:HMM:NF024209.2
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF037660.2
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: similar to AA sequence:RefSeq:WP_010981551.1
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007182944.1
COORDINATES: protein motif:HMM:NF018714.2
COORDINATES: similar to AA sequence:RefSeq:WP_015282507.1
DUF3991 and TOPRIM domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015898210.1
VirB3 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013573109.1
VirB4 family type IV secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013568916.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: similar to AA sequence:RefSeq:WP_013581510.1
COORDINATES: similar to AA sequence:RefSeq:WP_013569442.1
COORDINATES: similar to AA sequence:RefSeq:WP_013568910.1
COORDINATES: similar to AA sequence:RefSeq:WP_013581504.1
COORDINATES: similar to AA sequence:RefSeq:WP_013568905.1
COORDINATES: similar to AA sequence:RefSeq:WP_013573119.1
COORDINATES: similar to AA sequence:RefSeq:WP_013581499.1
COORDINATES: similar to AA sequence:RefSeq:WP_013568900.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013581497.1
COORDINATES: similar to AA sequence:RefSeq:WP_020711044.1
carboxypeptidase regulatory-like domain-containing protein
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF037501.2
Swt1 family HEPN domain-containing protein