Azospirillum thermophilum strain CFH 70021 plasmid unnamed5.
Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales; Azospirillaceae; Azospirillum.
Azospirillum thermophilum sp. nov., isolated from a hot spring
Submitted (10-MAY-2018) College of Fisheries, Henan Normal University, Jianshe Road, Xinxiang, Henan 453007, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP029360.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. September-2017; SOAPdenovo v.\n September-2017\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio; Illumina HiSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/04/2023 06:29:32\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 6,291\nCDSs (total) :: 6,196\nGenes (coding) :: 5,954\nCDSs (with protein) :: 5,954\nGenes (RNA) :: 95\nrRNAs :: 6, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 7, 7 (5S, 16S, 23S)\ntRNAs :: 71\nncRNAs :: 4\nPseudo Genes (total) :: 242\nCDSs (without protein) :: 242\nPseudo Genes (ambiguous residues) :: 0 of 242\nPseudo Genes (frameshifted) :: 175 of 242\nPseudo Genes (incomplete) :: 84 of 242\nPseudo Genes (internal stop) :: 3 of 242\nPseudo Genes (multiple problems) :: 19 of 242\nCRISPR Arrays :: 8\n##Genome-Annotation-Data-END##
type material of Azospirillum thermophilum
COORDINATES: similar to AA sequence:RefSeq:WP_005879662.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018232519.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_015930611.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012972983.1
COORDINATES: similar to AA sequence:RefSeq:WP_014248848.1
COORDINATES: similar to AA sequence:RefSeq:WP_014413977.1
COORDINATES: similar to AA sequence:RefSeq:WP_014188159.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008027778.1
GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014238998.1
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF040389.1
COORDINATES: protein motif:HMM:NF019000.2
host-nuclease inhibitor Gam family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011391062.1
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:NF024212.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF012798.2
COORDINATES: similar to AA sequence:RefSeq:WP_014190012.1
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: protein motif:HMM:NF027249.2
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_014248863.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF028088.2
COORDINATES: similar to AA sequence:RefSeq:WP_014199161.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199162.1
COORDINATES: protein motif:HMM:NF018497.2
phage tail length tape measure family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015989347.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199165.1
COORDINATES: similar to AA sequence:RefSeq:WP_014199166.1
COORDINATES: similar to AA sequence:RefSeq:WP_012973459.1
COORDINATES: protein motif:HMM:TIGR01554.2
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016471.2
COORDINATES: protein motif:HMM:TIGR01537.1