Chromobacterium phragmitis strain IIBBL 112-1 plasmid unnamed, complete sequence.
type: Entry
definition: Chromobacterium phragmitis strain IIBBL 112-1 plasmid unnamed, complete sequence.
sequence version: NZ_CP029496.1
sequence date: 2022-12-31
sequence: sequence
division: CON
label: NZ_CP029496.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN09210928
keyword: RefSeq
source: Chromobacterium phragmitis
organism: Chromobacterium phragmitis
taxonomy: Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP029496.1.\nBacteria available from Michael Blackburn, USDA-ARS-IIBBL,\nBeltsville, MD, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-MAY-2015\nAssembly Method :: MAY-2015 v. MAY-2015\nAssembly Name :: 112-1 SMRT Analysis assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 01:56:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,637\nCDSs (total) :: 4,509\nGenes (coding) :: 4,489\nCDSs (with protein) :: 4,489\nGenes (RNA) :: 128\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 6 of 20\nPseudo Genes (incomplete) :: 14 of 20\nPseudo Genes (internal stop) :: 3 of 20\nPseudo Genes (multiple problems) :: 3 of 20\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 17589
topology: circular
so has quality: SO_0000988
location: 1..17589
location: region:1-17589:1
RO_0002162: 2202141

NZ_CP029496
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN09210928
type: BioSample
SIO_000068: biosample

1
title: 112-1 strain of Chromobacterium phragmitis
author: Sparks, M.E.
author: Blackburn, M.B.
author: Gundersen-Rindal, D.E.
journal: Unpublished

2
title: Direct Submission
author: Sparks, M.E.
author: Blackburn, M.B.
author: Gundersen-Rindal, D.E.
journal: Submitted (18-MAY-2018) IIBBL, USDA-ARS, 10300 Baltimore Ave, Bldg 007, Rm 005, BARC-West, Beltsville, MD 20705, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17589:1
position: 17589
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-17589:1:source
so part of: sequence
organism: Chromobacterium phragmitis
mol type: genomic DNA
strain: IIBBL 112-1
isolation source: tidal marsh
type material: type material of Chromobacterium phragmitis
plasmid: unnamed
country: USA: Potomac River near Nanjemoy, MD
altitude: 0 m
collection date: 2014-08-08
collected by: R. R. Farrar Jr.

2202141
type: Taxonomy
SIO_000068: taxonomy

DK842_RS22750
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22750
old locus tag: DK842_22750
so part of: sequence
location: 30..284
location: region:30-284:1
so has part: feature:30-284:1:exon
subclass of: SO_0000010

position:30:1
position: 30
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:284:1
position: 284
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30-284:1:exon

DK842_RS22750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22750
old locus tag: DK842_22750
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MREITDDQNVVFLHGDPADNSKVVFLSIHDGKPEDDRVLPRSAAIDAAIQFIQEVGAGVTILGISTTSESRLRVTSILPTSRPL
SIO_010081: DK842_RS22750
subclass of: SO_0000673
so part of: DK842_RS22750
location: 30..284
location: region:30-284:1
so has part: feature:30-284:1:exon

WP_145964145.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:30-284:1:exon

DK842_RS22755
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22755
old locus tag: DK842_22755
so part of: sequence
location: 365..1093
location: region:365-1093:1
so has part: feature:365-1093:1:exon
subclass of: SO_0000010

position:365:1
position: 365
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1093:1
position: 1093
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:365-1093:1:exon

DK842_RS22755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22755
old locus tag: DK842_22755
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGGTLGGVWWWSDASEKEAQARIAEAEAAKPDPVVEYRAQLKKALDQEPLNHGVQYARSVQRLIQVLPSEAGGWKVDRLLCKDQACILVWKRGAGGTFETLLKERQVSQFQDMDTASESLTIPESQARQVVPIPQDQFYLKGGVRMQILVDAGKQIEQGKEMMSVSLSKLQPLIAEPPALKNRRGAIELVSKGDWSLKGHLAFIDSIAGLLERAGNMSLTEVTVVINEKSPEFSAQGRFYVK
SIO_010081: DK842_RS22755
subclass of: SO_0000673
so part of: DK842_RS22755
location: 365..1093
location: region:365-1093:1
so has part: feature:365-1093:1:exon

WP_168194985.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:365-1093:1:exon

DK842_RS23240
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23240
so part of: sequence
location: 1083..1466
location: region:1083-1466:1
so has part: feature:1083-1466:1:exon
subclass of: SO_0000010

position:1083:1
position: 1083
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1466:1
position: 1466
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1083-1466:1:exon

DK842_RS23240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23240
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MLSKFFVVLSLASSIASADTIDTFAKGTLTTPAPSAGVSMPGGLPAIPSVSPPIPMQGTAVPGKDGASQVFDIVFIQGSGNVRKAYLVVDGKYGKIVSRNEVVQGWKVVQIGGILSTSAKVENERDY
SIO_010081: DK842_RS23240
subclass of: SO_0000673
so part of: DK842_RS23240
location: 1083..1466
location: region:1083-1466:1
so has part: feature:1083-1466:1:exon

WP_145964142.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1083-1466:1:exon

DK842_RS22760
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22760
old locus tag: DK842_22760
so part of: sequence
location: 1529..3265
location: region:1529-3265:1
so has part: feature:1529-3265:1:exon
subclass of: SO_0000010

position:1529:1
position: 1529
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3265:1
position: 3265
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1529-3265:1:exon

DK842_RS22760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22760
old locus tag: DK842_22760
inference: COORDINATES: protein motif:HMM:NF012652.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MFNKWLAKFSGTGTAPPSHVMQSARERSAGIKGGLPVRRVASLKSETIRHYGWKQESDLSLSGYENNSMVLGSAKARQYILLLEDIAYRQLKATDLLQRFDSGVHARAKLNCLGVFVGTMEEILLIHSQLQQHSTEASSRDGDPKTGGYRNFDLIVEKAIELKASDVHFEFRDKNQVVVKFRIHSKLREADARDRLSRDFNAMMDAVSTAFNSRADSSSRSHGHFDPHKHQSCSIPISVKGRDYQLRFQSIKENRGVDVILRILLNEAVESDIMSLSQLGYAEDHIEILEDGVHRSPGLLVIAGETGSGKTTSLRTLMTYERDSGKKFYSIEDPVEYIQPHVTQIPIQRKAEDGKKESGETPFGAAAKVVLRGDPDKIMSGEVRDRETGAFAKSMTETGHQVLSTVHASSCFGIIPRLSGDEIGMPLHAMASPDFLVALVYQKLVPVLCPECCRPGMEVLDEELLMTIASMGLDIEKIRAEGEGCPHCRHLGTVGQTVVAEVCEVTEEMLPMIREGRFWEAERYWRSLSNGKLYDAGMFGKTAMEHAIYKMSLGLLDPRDVESAFRKLKKYHPFNPAN
SIO_010081: DK842_RS22760
subclass of: SO_0000673
so part of: DK842_RS22760
location: 1529..3265
location: region:1529-3265:1
so has part: feature:1529-3265:1:exon

WP_114059529.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1529-3265:1:exon

DK842_RS22770
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22770
old locus tag: DK842_22770
so part of: sequence
location: 3633..5168
location: region:3633-5168:1
so has part: feature:3633-5168:1:exon
subclass of: SO_0000010

position:3633:1
position: 3633
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5168:1
position: 5168
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3633-5168:1:exon

DK842_RS22770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22770
old locus tag: DK842_22770
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MALLQRVAQEARGESASAAEAFDMGYSEDISFAAPEEAPGGDVAGDVAREHQSLPEWARVAIKSGMLGRDSVQMSQCLDALGLVDGESHAAHAAASWPVPALHLAFSDLAAVAVSARGELPAFLRMEDRLGGDGYFFMRGEHWGKDLLIVADASRGDASDQVRRACDQAEAERLTVQVVALSSHVYAWALRRFLWQEIVEAGEVAHAVDICDAFRVYAATAGWGRRLLLQESAYGLEPLAVADDAAARELLGRLGAVHSLNGDALWLCEPTMSLERKGKAAPLSAFGLTDRVAIDRLLAELTRPGAIVFVSGSMAWRLTASLLAEAWRGGVPAAYGEESAIAGVATVLANPDADCLRGFSSPVIAVYPSRQANAESALMFLLGERPEWAKGRVLMGVNTRRVPALCPICANPVDAEQAARELTEVVNDFRGASFERVRTRNTEAPCCGTGYAGEVWLSEVWDGRVFQKEIGLVTLGDLVEKGLRQDQRISAKLLQAIQAGTVDYRLAGGAR
SIO_010081: DK842_RS22770
subclass of: SO_0000673
so part of: DK842_RS22770
location: 3633..5168
location: region:3633-5168:1
so has part: feature:3633-5168:1:exon

WP_114063860.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3633-5168:1:exon

DK842_RS22775
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22775
old locus tag: DK842_22775
so part of: sequence
location: 5252..6268
location: region:5252-6268:1
so has part: feature:5252-6268:1:exon
subclass of: SO_0000010

position:5252:1
position: 5252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6268:1
position: 6268
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5252-6268:1:exon

DK842_RS22775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22775
old locus tag: DK842_22775
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: type II secretion system F family protein
translation: MKLRAKFYSDLADSIEDGANPYELFSQKHALARERGNSMAPLFALWRDRAASKNLKSAWEGTVPADDLMVIGSGERGDLPSALRFLAKVVKIRERNAKAIKLAVSLPIFLLMLMTGVQLGVALGMMPIMEQIMPPDKFPLIGRILYWMSHVIRDFWYLIYGVPACLLVAYFWSLPRWTGPMRNRLDRRLPYSIYRDLKASEFLVSLAAMSQAHTATFDAVCLLEQGATPWMRWHLARIRVSLTDNRSILKAMDTGLFSEEIFDRIAEYAERSNFEDGIRKIGLGTIEEIAEMIAERSSMIRNILIVIVGGFIMLTVAGMLLTALESSNQIQQMTGGPI
SIO_010081: DK842_RS22775
subclass of: SO_0000673
so part of: DK842_RS22775
location: 5252..6268
location: region:5252-6268:1
so has part: feature:5252-6268:1:exon

WP_168194782.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5252-6268:1:exon

DK842_RS22780
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22780
old locus tag: DK842_22780
so part of: sequence
location: 6341..6916
location: region:6341-6916:1
so has part: feature:6341-6916:1:exon
subclass of: SO_0000010

position:6341:1
position: 6341
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6916:1
position: 6916
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6341-6916:1:exon

DK842_RS22780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22780
old locus tag: DK842_22780
inference: COORDINATES: protein motif:HMM:NF020384.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type 4 pilus major pilin
translation: MNHMQSIRKTGVRSSLKRQAGFDLVQISVAVAIIAFIMAIAFLAVPTVMTNIKVNAETGDLQQMVSNAGRVAGTGADLSGLNAAAAINLRLAPPDRVFGGNINNRFGGTVAWALSNLFGSNDGISITSRGYGPEACSKLIPNVQTMFTRITVGSTVVKNLAAATPVPLSATGMANACAAANSQDIVFEFTR
SIO_010081: DK842_RS22780
subclass of: SO_0000673
so part of: DK842_RS22780
location: 6341..6916
location: region:6341-6916:1
so has part: feature:6341-6916:1:exon

WP_114059526.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6341-6916:1:exon

DK842_RS22785
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22785
old locus tag: DK842_22785
so part of: sequence
location: 6977..7930
location: region:6977-7930:1
so has part: feature:6977-7930:1:exon
subclass of: SO_0000010

position:6977:1
position: 6977
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7930:1
position: 7930
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6977-7930:1:exon

DK842_RS22785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22785
old locus tag: DK842_22785
inference: COORDINATES: protein motif:HMM:NF012652.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATPase, T2SS/T4P/T4SS family
translation: MSQQQQIFTDVQLHVRDWQQSVLFPGQVKPGEQFKGFLTKMTEAVLIEQQAVGRRTAFPVTLQGMRWRVQRIQQYRYACRLVMNRAPRLAELKLLDCHANMMLSDELRKSGGLVLFSGLTGSGKTTTMNAMVVSRLEKFGGFAQTVEDPIEIVIEGWHGEGYCTQIDVGESPSGQEFNFDRRYAESITAALRSFPARDRSMLMIGEVRDGHSAAELLRIAVDGHLVLSTIHSRDISSGLRRLAALARSGGESQADEFIADALRMSFHQRLDNGIPQVLSLDLRERKDLSQFIARGEYARLDGEIESQRRRNVQSRGV
SIO_010081: DK842_RS22785
subclass of: SO_0000673
so part of: DK842_RS22785
location: 6977..7930
location: region:6977-7930:1
so has part: feature:6977-7930:1:exon

WP_168194781.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6977-7930:1:exon

DK842_RS22790
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22790
old locus tag: DK842_22790
so part of: sequence
location: 7930..9024
location: region:7930-9024:1
so has part: feature:7930-9024:1:exon
subclass of: SO_0000010

position:9024:1
position: 9024
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7930-9024:1:exon

DK842_RS22790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22790
old locus tag: DK842_22790
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRRKQAGEILIGVAIAVVMIGMVLSYFGVRQVNEWRVSRGEIVGGALAELGKGVNSYVVQYHPQIVSALFGGPSQVKDAGGRVIVQNAAAPTAAEIASIAGLSGFGATPPIPGGNYVIRLSRGGSCVDQATCNVNALTYIDRPLLMPFPGASDRVDYMATGAAVQAIGINGGASFLSPSNANSNANLTFHSPGGAVEAIPNPVAGAPGGIVAMRGGYIRADFDEFLRRDGTKPMTGNLNMDAHDILNAKDILGSGTITMGGDVKAGASVFANMNVSAGRDVAAGGKVTAGQNVEAGQDVVAAHDVRASNDVKAAQNVVAGNMVQGNTLYPNKVVAENEPGCSPEGAIARSSAGLILSCQSGVEL
SIO_010081: DK842_RS22790
subclass of: SO_0000673
so part of: DK842_RS22790
location: 7930..9024
location: region:7930-9024:1
so has part: feature:7930-9024:1:exon

WP_114063861.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7930-9024:1:exon

DK842_RS22795
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22795
old locus tag: DK842_22795
so part of: sequence
location: complement(10733..11866)
location: region:10733-11866:-1
so has part: feature:10733-11866:-1:exon
subclass of: SO_0000010

position:10733:-1
position: 10733
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11866:-1
position: 11866
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10733-11866:-1:exon

DK842_RS22795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22795
old locus tag: DK842_22795
inference: COORDINATES: similar to AA sequence:RefSeq:WP_003451616.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MDKTQKLKETLDHYRRRVSILKKGYAQERYRIDQLSRSFLGQLVTNEISTVDVATYRDQRLAQINPKTNKPISAATVRLEMSLLSNCLDIARIEWGVCDGNPVKNVKKPKTPPGRERRLTAREERLILRYCHNHSNQELYSIVVLALETAMRQGEILKLEWEHINLKTRIAHLPDTKNGSKRDVPLSVKARDALIRLGVKSKGRVMSYGPNGLKSTWRFMVIKLGIEDLHFHDLRHEAISRLVELGTLDLLEVAAISGHKSLAMLKRYTHLRAQRLVRKLEGNKHKGKQAVLDHLIPYPACMEERNNHIELRLLDFDNLVTRAATEEQAIHSAQDILLRTILTSMRDAKPIPQPDQYLEAIDERKVIMIDPLASQHA
SIO_010081: DK842_RS22795
subclass of: SO_0000673
so part of: DK842_RS22795
location: complement(10733..11866)
location: region:10733-11866:-1
so has part: feature:10733-11866:-1:exon

WP_114063532.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10733-11866:-1:exon

DK842_RS22800
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22800
old locus tag: DK842_22800
so part of: sequence
location: complement(12648..13490)
location: region:12648-13490:-1
so has part: feature:12648-13490:-1:exon
subclass of: SO_0000010

position:12648:-1
position: 12648
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13490:-1
position: 13490
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12648-13490:-1:exon

DK842_RS22800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22800
old locus tag: DK842_22800
inference: COORDINATES: protein motif:HMM:NF012772.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: EAL domain-containing protein
translation: MIPSELVRSTPTRDTLDAALRNNEFRLHYQPQLSCSSLQLTGAEALTRWKQSPSSSKLTNPSHFIPQAEENGFIMALGDWCLQTAIQTTSAWERGSLPPHFRTAINLSVRQITPELPKRIDSLIREAGLDPWRIELEITESFLFQDLPTMTDIARQLRNLGVRVAIDDFGTGFSVLEHLRHIPATTIKIDRSFTQRMLRIERDHIIMRNLIRMIRDLGMESICEGVETAEQLKAVQDMGADHWQGFLFSPAIPAENLTLLLPSESDTPPSPRAARANNYP
SIO_010081: DK842_RS22800
subclass of: SO_0000673
so part of: DK842_RS22800
location: complement(12648..13490)
location: region:12648-13490:-1
so has part: feature:12648-13490:-1:exon

WP_168194986.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12648-13490:-1:exon

DK842_RS23245
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23245
so part of: sequence
location: 14198..14542
location: region:14198-14542:1
so has part: feature:14198-14542:1:exon
subclass of: SO_0000010

position:14198:1
position: 14198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14542:1
position: 14542
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14542:1:exon

DK842_RS23245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23245
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MWQTSQAGEAATGGLEPVGYAGGRGEVKRNAFLSTIKFNRFDYVAAVTSPGLDLYDPALQRPDNAACGVMADRMSEALFAGLKHDKTDEAYYARHRAAIDAVRSVWRKMDELEK
SIO_010081: DK842_RS23245
subclass of: SO_0000673
so part of: DK842_RS23245
location: 14198..14542
location: region:14198-14542:1
so has part: feature:14198-14542:1:exon

WP_145964143.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14198-14542:1:exon

DK842_RS23505
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23505
so part of: sequence
location: 14539..14784
location: region:14539-14784:1
so has part: feature:14539-14784:1:exon
subclass of: SO_0000010

position:14539:1
position: 14539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14784:1
position: 14784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14539-14784:1:exon

DK842_RS23505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23505
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKTFLSCFALTLVALSIGGLGVVGMSLPAGAAADAGGNGGGGKSGFCFAKPFTIPMRISSHATPLREQPRQGNTGPTMATT
SIO_010081: DK842_RS23505
subclass of: SO_0000673
so part of: DK842_RS23505
location: 14539..14784
location: region:14539-14784:1
so has part: feature:14539-14784:1:exon

WP_168194987.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14539-14784:1:exon

DK842_RS23510
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23510
so part of: sequence
location: 14787..15146
location: region:14787-15146:1
so has part: feature:14787-15146:1:exon
subclass of: SO_0000010

position:14787:1
position: 14787
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15146:1
position: 15146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14787-15146:1:exon

DK842_RS23510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23510
EC number: 3.4.-.-
inference: COORDINATES: protein motif:HMM:NF013700.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: M23 family metallopeptidase
translation: MPSNTPIYAPADGVIQTVARNRPGRQLLNIQHPSGYLTRYLHLNSISVRNGQRVKTGELLGYSGMTGGVSTGPHLHWEAHIPVYKKPFPPVGPTYMFVKALPRLSRRKKPRKRATRLKR
SIO_010081: DK842_RS23510
subclass of: SO_0000673
so part of: DK842_RS23510
location: 14787..15146
location: region:14787-15146:1
so has part: feature:14787-15146:1:exon

WP_168194988.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14787-15146:1:exon

DK842_RS23515
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23515
so part of: sequence
location: 15285..15425
location: region:15285-15425:1
so has part: feature:15285-15425:1:exon
subclass of: SO_0000010

position:15285:1
position: 15285
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15425:1
position: 15425
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15285-15425:1:exon

DK842_RS23515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23515
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNILRNLNKSSLRKKAVVIALGGVLIMTPVAAYADWGDILGKILNA
SIO_010081: DK842_RS23515
subclass of: SO_0000673
so part of: DK842_RS23515
location: 15285..15425
location: region:15285-15425:1
so has part: feature:15285-15425:1:exon

WP_168194989.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15285-15425:1:exon

DK842_RS23520
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23520
old locus tag: DK842_22815
so part of: sequence
location: 15688..15864
location: region:15688-15864:1
so has part: feature:15688-15864:1:exon
subclass of: SO_0000010

position:15688:1
position: 15688
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15864:1
position: 15864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15688-15864:1:exon

DK842_RS23520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23520
old locus tag: DK842_22815
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MADNLDHSTAIQGYYGAVTGWYQAASPDERRQAMQPPSFEPGYIPTPQENQMADYNAN
SIO_010081: DK842_RS23520
subclass of: SO_0000673
so part of: DK842_RS23520
location: 15688..15864
location: region:15688-15864:1
so has part: feature:15688-15864:1:exon

WP_168194990.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15688-15864:1:exon

DK842_RS22820
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS22820
old locus tag: DK842_22820
so part of: sequence
location: 16087..16653
location: region:16087-16653:1
so has part: feature:16087-16653:1:exon
subclass of: SO_0000010

position:16087:1
position: 16087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16653:1
position: 16653
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16087-16653:1:exon

DK842_RS22820
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS22820
old locus tag: DK842_22820
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKAQVQLLAIQSGLLLSQYQSSLRQERLLAVMASNNAKMAMKERLRKLLRGSRCKVMRSEDAGMRAAIRNGCKGQAARCWRPARVSNAAGTCALYCGCRRKVGRRGLGRSDLAQRLDALAESQVWAITPSCSRKYLPSKSKRCQGSEQLKNSPRRRFQNAVETFVGEGANFRGGQLGYTVSRKQLRMN
SIO_010081: DK842_RS22820
subclass of: SO_0000673
so part of: DK842_RS22820
location: 16087..16653
location: region:16087-16653:1
so has part: feature:16087-16653:1:exon

WP_114063866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16087-16653:1:exon

DK842_RS23250
type: Gene
subclass of: SO_0000704
RO_0002162: 2202141
locus tag: DK842_RS23250
so part of: sequence
location: 17029..17541
location: region:17029-17541:1
so has part: feature:17029-17541:1:exon
subclass of: SO_0000010

position:17029:1
position: 17029
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17541:1
position: 17541
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17029-17541:1:exon

DK842_RS23250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2202141
locus tag: DK842_RS23250
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNQLIRMAEKRRRQADRKKIEYENKMKRQEATYLGQAAAQAIRGDRFFIYGTSGGMNANQRVIEQFANQDRGSLAEWLFYGESTCFFLWLVGRLSPERRKEIMTPYEIGPNLDAEGSRLNRRRRIRRMSDESMADSCIEPCLPLRHGLARRLSGGVGDSGPVRFGVDAEL
SIO_010081: DK842_RS23250
subclass of: SO_0000673
so part of: DK842_RS23250
location: 17029..17541
location: region:17029-17541:1
so has part: feature:17029-17541:1:exon

WP_145964144.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17029-17541:1:exon