Chromobacterium phragmitis strain IIBBL 112-1 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.
112-1 strain of Chromobacterium phragmitis
Submitted (18-MAY-2018) IIBBL, USDA-ARS, 10300 Baltimore Ave, Bldg 007, Rm 005, BARC-West, Beltsville, MD 20705, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP029496.1.\nBacteria available from Michael Blackburn, USDA-ARS-IIBBL,\nBeltsville, MD, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 20-MAY-2015\nAssembly Method :: MAY-2015 v. MAY-2015\nAssembly Name :: 112-1 SMRT Analysis assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 30x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/31/2022 01:56:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,637\nCDSs (total) :: 4,509\nGenes (coding) :: 4,489\nCDSs (with protein) :: 4,489\nGenes (RNA) :: 128\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 99\nncRNAs :: 4\nPseudo Genes (total) :: 20\nCDSs (without protein) :: 20\nPseudo Genes (ambiguous residues) :: 0 of 20\nPseudo Genes (frameshifted) :: 6 of 20\nPseudo Genes (incomplete) :: 14 of 20\nPseudo Genes (internal stop) :: 3 of 20\nPseudo Genes (multiple problems) :: 3 of 20\nCRISPR Arrays :: 3\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type material of Chromobacterium phragmitis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF012652.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF020384.2
COORDINATES: similar to AA sequence:RefSeq:WP_003451616.1
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF013700.2