Aythya fuligula voucher JS04 mitochondrion, complete genome.
type: Entry
definition: Aythya fuligula voucher JS04 mitochondrion, complete genome.
sequence version: NC_024595.1
sequence date: 2023-04-03
sequence: sequence
division: VRT
label: NC_024595.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Aythya fuligula (tufted duck)
organism: Aythya fuligula
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Anseriformes; Anatidae; Aythyinae; Aythya.
reference: 1
references: 24972046
reference: 2
reference: 3
comment: REVIEWED REFSEQ: This record has been curated by NCBI staff. The\nreference sequence is identical to KJ722069.\n\n##Assembly-Data-START##\nSequencing Technology :: Sanger dideoxy sequencing\n##Assembly-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 16616
topology: circular
so has quality: SO_0000988
location: 1..16616
location: region:1-16616:1
RO_0002162: 219594

NC_024595
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete mitochondrial genome of Aythya fuligula (Anatidae: Aythya)
author: Ding, L.
author: Zhang, C.
author: Chang, Q.
author: Yan, L.
author: Zhang, B.
journal: Mitochondrial DNA (2014) In press
pubmed: 24972046
comments: Publication Status: Available-Online prior to print

24972046
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (28-JUL-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Zhang, B.
author: Ding, L.
author: Yan, L.
journal: Submitted (16-APR-2014) School of Life Science, Anhui University, Jiulong Road 111, Hefei, Hefei, Anhui 230039, P.R. China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16616:1
position: 16616
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16616:1:source
so part of: sequence
organism: Aythya fuligula
organelle: mitochondrion
mol type: genomic DNA
specimen voucher: JS04

219594
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Phe
so part of: sequence
location: 1..70
location: region:1-70:1
so has part: feature:1-70:1:region

position:70:1
position: 70
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-70:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 219594
product: s-rRNA
note: 12S ribosomal RNA
so part of: sequence
location: 71..1054
location: region:71-1054:1
so has part: feature:71-1054:1:region

position:71:1
position: 71
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1054:1
position: 1054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:71-1054:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Val
so part of: sequence
location: 1055..1125
location: region:1055-1125:1
so has part: feature:1055-1125:1:region

position:1055:1
position: 1055
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1125:1
position: 1125
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1055-1125:1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 219594
product: l-rRNA
note: 16S ribosomal RNA
so part of: sequence
location: 1126..2728
location: region:1126-2728:1
so has part: feature:1126-2728:1:region

position:1126:1
position: 1126
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2728:1
position: 2728
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1126-2728:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2729..2802
location: region:2729-2802:1
so has part: feature:2729-2802:1:region

position:2729:1
position: 2729
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2802:1
position: 2802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2729-2802:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND1
so part of: sequence
location: 2807..3784
location: region:2807-3784:1
so has part: feature:2807-3784:1:exon
subclass of: SO_0000010

19909408
type: Gene
SIO_000068: ncbigene

position:2807:1
position: 2807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3784:1
position: 3784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2807-3784:1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND1
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 1
translation: MPQMTMMSYLIMSLLYAIPILIAVAFLTLVERKILSYMQSRKGPNIVGPFGLLQPIADGIKLFIKEPIRPSTSSPLLFITMPMLALLLALTVWVPLPLPFSLVDLNLGVLFMVAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLALILLSVIMLTGNYTLSTFAVAQEPLYLIFSSWPLAMMWYVSTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANIMLMNTLTAIIFLNPSALGPSPELFPIILATKVLLLSSGFLWVRASYPRFRYDQLMHLLWKNFLPLTLALCLWHTSLPICYAGLPPSM
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: 2807..3784
location: region:2807-3784:1
so has part: feature:2807-3784:1:exon

YP_009049079.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2807-3784:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Ile
so part of: sequence
location: 3783..3854
location: region:3783-3854:1
so has part: feature:3783-3854:1:region

position:3783:1
position: 3783
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3854:1
position: 3854
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3783-3854:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Gln
so part of: sequence
location: complement(3863..3933)
location: region:3863-3933:-1
so has part: feature:3863-3933:-1:region

position:3863:-1
position: 3863
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3933:-1
position: 3933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3863-3933:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Met
so part of: sequence
location: 3933..4001
location: region:3933-4001:1
so has part: feature:3933-4001:1:region

position:3933:1
position: 3933
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4001:1
position: 4001
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3933-4001:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND2
so part of: sequence
location: 4002..5040
location: region:4002-5040:1
so has part: feature:4002-5040:1:exon
subclass of: SO_0000010

19909396
type: Gene
SIO_000068: ncbigene

position:4002:1
position: 4002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5040:1
position: 5040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4002-5040:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND2
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:5040,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 2
translation: MNPHATPILVLSLMLGTTITISSNHWVLAWTGLEINTLAIIPMISKSHHPRAEEAATKYFLTQAAASALVLFSSMTNAWATGQWDITQLNHPTSCLLLTAAIAIKLGLVPFHFWFPEVLQGSPLMTALLLSTLMKFPPLTLLVMTSKSLNPSLLTAMALASAALGGWMGLNQTQTRKILAFSSISHLGWIAIILVYSPKLALLTFYLYTIMTSAVFMALNKIKALNLSMILTSWTKTPVLNATLMLVLLSLAGLPPLTGFMPKWLIIQELTKQEMTPAAMVIAMLSLLSLFFYLRLAYHSTITLPPNSSNHMKQWYTSKPPSTPTAILASLSILLLPLSPMVHAIV
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 4002..5040
location: region:4002-5040:1
so has part: feature:4002-5040:1:exon

YP_009049080.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4002-5040:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Trp
so part of: sequence
location: 5041..5116
location: region:5041-5116:1
so has part: feature:5041-5116:1:region

position:5041:1
position: 5041
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5116:1
position: 5116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5041-5116:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Ala
so part of: sequence
location: complement(5120..5188)
location: region:5120-5188:-1
so has part: feature:5120-5188:-1:region

position:5120:-1
position: 5120
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5188:-1
position: 5188
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5120-5188:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Asn
so part of: sequence
location: complement(5191..5263)
location: region:5191-5263:-1
so has part: feature:5191-5263:-1:region

position:5191:-1
position: 5191
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5263:-1
position: 5263
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5191-5263:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Cys
so part of: sequence
location: complement(5264..5329)
location: region:5264-5329:-1
so has part: feature:5264-5329:-1:region

position:5264:-1
position: 5264
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5329:-1
position: 5329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5264-5329:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Tyr
so part of: sequence
location: complement(5329..5399)
location: region:5329-5399:-1
so has part: feature:5329-5399:-1:region

position:5399:-1
position: 5399
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5329-5399:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: COX1
so part of: sequence
location: 5401..6951
location: region:5401-6951:1
so has part: feature:5401-6951:1:exon
subclass of: SO_0000010

19909397
type: Gene
SIO_000068: ncbigene

position:5401:1
position: 5401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6951:1
position: 6951
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5401-6951:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: COX1
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit I
translation: MTFINRWLFSTNHKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGVSSILGAINFITTAINMKPPALSQYQTPLFVWSVLITAILLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIISHVVTYYSGKKEPFGYMGMVWAMLSIGFLGFIVWAHHMFTVGMDVDTRAYFTSATMIIAIPTGIKVFSWLATLHGGTIKWDPPMLWALGFIFLFTIGGLTGIVLANSSLDIALHDTYYVVAHFHYVLSMGAVFAILAGFTHWFPLLTGFTLHQTWAKAHFGVMFTGVNLTFFPQHFLGLAGMPRRYSDYPDAYTLWNTISSIGSLISMVAVIMLMFIIWEAFSAKRKVLQPELTATNIEWIHGCPPPYHTFEEPAFVQVQE
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: 5401..6951
location: region:5401-6951:1
so has part: feature:5401-6951:1:exon

YP_009049081.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5401-6951:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: complement(6943..7015)
location: region:6943-7015:-1
so has part: feature:6943-7015:-1:region

position:6943:-1
position: 6943
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7015:-1
position: 7015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6943-7015:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Asp
so part of: sequence
location: 7018..7086
location: region:7018-7086:1
so has part: feature:7018-7086:1:region

position:7018:1
position: 7018
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7086:1
position: 7086
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7018-7086:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: COX2
so part of: sequence
location: 7088..7774
location: region:7088-7774:1
so has part: feature:7088-7774:1:exon
subclass of: SO_0000010

19909398
type: Gene
SIO_000068: ncbigene

position:7088:1
position: 7088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7774:1
position: 7774
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7088-7774:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: COX2
codon start: 1
transl table: 2
product: cytochrome c oxidase subunit II
translation: MANHSQLGFQDASSPIMEELVEFHDHALIVALAICSLVLYLLAHMLVEKLSSNAVDAQEVELIWTILPAIVLVLLALPSLQILYMMDEIDEPDLTLKAIGHQWYWSYEYTDFKDLSFDSYMIPTTDLPNGHFRLLEVDHRVVVPMESPIRVIITAGDVLHSWAVPTLGVKTDAIPGRLNQTSFITTRPGIFYGQCSEICGANHSYMPIVVESTPLPHFEAWSSLLSSS
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 7088..7774
location: region:7088-7774:1
so has part: feature:7088-7774:1:exon

YP_009049082.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7088-7774:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Lys
so part of: sequence
location: 7776..7843
location: region:7776-7843:1
so has part: feature:7776-7843:1:region

position:7776:1
position: 7776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7843:1
position: 7843
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7776-7843:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ATP8
so part of: sequence
location: 7845..8012
location: region:7845-8012:1
so has part: feature:7845-8012:1:exon
subclass of: SO_0000010

19909399
type: Gene
SIO_000068: ncbigene

position:7845:1
position: 7845
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8012:1
position: 8012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7845-8012:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ATP8
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 8
translation: MPQLNPAPWFSIMIMTWLTLALLIQPKLLTFTTTNPPSSKPSLTTKPTPWAWPWT
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 7845..8012
location: region:7845-8012:1
so has part: feature:7845-8012:1:exon

YP_009049083.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7845-8012:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ATP6
so part of: sequence
location: 8003..8686
location: region:8003-8686:1
so has part: feature:8003-8686:1:exon
subclass of: SO_0000010

19909400
type: Gene
SIO_000068: ncbigene

position:8003:1
position: 8003
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8686:1
position: 8686
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8686:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ATP6
codon start: 1
transl table: 2
product: ATP synthase F0 subunit 6
translation: MNLSFFDQFSSPYLLGIPLILLSLLFPALLFPSPGNRWVSNRLSTIQLWLLHLITKQLMIPLNKNGHKWALMLTSLMTMLLTINLLGLLPYTFTPTTQLSMNMALAFPLWLATLLTGLRNKPSASLAHLLPEGTPTPLIPALILIETTSLLIRPLALGVRLTANLTAGHLLIQLISTASIALMPILPAVSILTMVILLLLTILEVAVAMIQAYVFVLLLSLYLQENI
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 8003..8686
location: region:8003-8686:1
so has part: feature:8003-8686:1:exon

YP_009049084.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8003-8686:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: COX3
so part of: sequence
location: 8686..9469
location: region:8686-9469:1
so has part: feature:8686-9469:1:exon
subclass of: SO_0000010

19909401
type: Gene
SIO_000068: ncbigene

position:9469:1
position: 9469
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8686-9469:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: COX3
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:9469,aa:TERM)
transl table: 2
product: cytochrome c oxidase subunit III
translation: MAHQAHSYHMVDPSPWPIFGAAAALLTTSGLIMWFHYNSSALLATGLLSMLLVMLQWWRDIVRESTFQGHHTPTVQKGLRYGMILFITSEAFFFLGFFWAFFHSSLVPTPELGGQWPPTGIKPLNPMEVPLLNTAILLASGVTVTWAHHSITEGNRKHAIHALTLTILLGFYFTALQAMEYYEAPFSIADSVYGSTFFVATGFHGLHVIIGSTFLTVCLLRLIKFHFTSNHHFGFEAAAWYWHFVDVIWLFLYMTIYWWGS
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 8686..9469
location: region:8686-9469:1
so has part: feature:8686-9469:1:exon

YP_009049085.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8686-9469:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Gly
so part of: sequence
location: 9470..9538
location: region:9470-9538:1
so has part: feature:9470-9538:1:region

position:9470:1
position: 9470
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9538:1
position: 9538
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9470-9538:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND3
so part of: sequence
location: 9539..9890
location: region:9539-9890:1
so has part: feature:9539-9890:1:exon
subclass of: SO_0000010

19909402
type: Gene
SIO_000068: ncbigene

position:9539:1
position: 9539
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9890:1
position: 9890
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9539-9890:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND3
note: frameshift mechanism unknown (Mindell et al., 1998, Mol. Biol. Evol., 15:1568-1571)
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 3
translation: MNMLTFMLSLSLALSAILTALNFWLAQMTPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQLQSPLMTLAWTAAILFLLTLGLAYEWAQGGLEWAE
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: join(9539..9712,9714..9890)
location: region:9539-9890:1
so has part: feature:9539-9712:1:exon
so has part: feature:9714-9890:1:exon

YP_009049086.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9539-9712:1:exon

position:9712:1
position: 9712
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:9714-9890:1:exon

position:9714:1
position: 9714
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Arg
so part of: sequence
location: 9892..9961
location: region:9892-9961:1
so has part: feature:9892-9961:1:region

position:9892:1
position: 9892
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9961:1
position: 9961
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9892-9961:1:region

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND4L
so part of: sequence
location: 9962..10258
location: region:9962-10258:1
so has part: feature:9962-10258:1:exon
subclass of: SO_0000010

19909403
type: Gene
SIO_000068: ncbigene

position:9962:1
position: 9962
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10258:1
position: 10258
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9962-10258:1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND4L
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 4L
translation: MSPLHLSFYSAFILSGLGLAFHRTHLVSALLCLESMMLSMFVGLTMWAIESQTPSFTTVPIIMLTFSACEAGTGLAILVASTRTHGSDHLHNLNLLQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: 9962..10258
location: region:9962-10258:1
so has part: feature:9962-10258:1:exon

YP_009049087.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9962-10258:1:exon

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND4
so part of: sequence
location: 10252..11629
location: region:10252-11629:1
so has part: feature:10252-11629:1:exon
subclass of: SO_0000010

19909404
type: Gene
SIO_000068: ncbigene

position:10252:1
position: 10252
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11629:1
position: 11629
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10252-11629:1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:11629,aa:TERM)
transl table: 2
product: NADH dehydrogenase subunit 4
translation: MLKIILPTIMLLPTALLSPPKFLWTNTTMYSLLIAALSLQWLIPTYYPHKFLSHWTGIDQISSPLLVLSCWLLPLMIMASQNHLQQEPLSRKRTFISTLIMVQPFILLAFSTTELALFYIAFEATLIPTLILITRWGNQPERLSAGTYLLFYTLVSSLPLLITIMHLYVKIGTLHLPTLELTHPTLSTSWTSILSGLALLMAFMVKAPLYGLHLWLPKAHVEAPIAGSMLLAALLLKLGGYGIMRVTLLMGPLSNLLHYPFLTLALWGALMTSSICLRQTDLKSLIAYSSVSHMGLVIAAGMIQTHWSFSGAMILMISHGLTSSMLFCLANTNYERTHSRILLLTRGLQPLLPLMATWWLLANLTNMALPPTTNLMAELTIMVTLFNWSALTIILTGIATLLTASYTLFMLLITQRGSIPSHITSIQNSTTREHLLMTLHIIPMFLLILKPELISGTPL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: 10252..11629
location: region:10252-11629:1
so has part: feature:10252-11629:1:exon

YP_009049088.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10252-11629:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-His
so part of: sequence
location: 11630..11698
location: region:11630-11698:1
so has part: feature:11630-11698:1:region

position:11630:1
position: 11630
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11698:1
position: 11698
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11630-11698:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Ser
codon recognized: AGY
so part of: sequence
location: 11699..11764
location: region:11699-11764:1
so has part: feature:11699-11764:1:region

position:11699:1
position: 11699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11764:1
position: 11764
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11699-11764:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: 11764..11834
location: region:11764-11834:1
so has part: feature:11764-11834:1:region

position:11834:1
position: 11834
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11764-11834:1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND5
so part of: sequence
location: 11835..13658
location: region:11835-13658:1
so has part: feature:11835-13658:1:exon
subclass of: SO_0000010

19909405
type: Gene
SIO_000068: ncbigene

position:11835:1
position: 11835
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13658:1
position: 13658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11835-13658:1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND5
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 5
translation: MNTTLLINSLTLLTLATLLTPIVLPLLFKNFKNTPLTITRTVKAAFLTSLLPATTFIYSGLESITCHWEWKFIMNFKIPLSLKMDQYSMTFLPIALFVTWSILQFAMWYMASEPYVTKFFTYLLTFLIAMLLLTTANNMFLLFIGWEGVGIMSFLLIGWWQGRAEANTAALQAVIYNRIGDIGLILSMAWLASTFNTWEIQQAVHPHQTPILPLMGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRMHPLLATNQTALTTCLCLGALSTLFAATCALTQNDIKKIIAFSTSSQLGLMMVAIGLNLPQLAFLHISTHAFFKAMLFLCSGSIIHSLNGEQDIRKMGGLQKMLPVTTSCLTIGNLALMGTPFLAGFYSKDLIIESLNTSYLNTWALSLTLLATAFTATYSIRMTLLVQAGQTRIPPMMPVNENNPLITAPLTRLALGSITAGMLITSFITPAKTPPMTMPLVTKTAAILVTILGIILALELSNMTHTLTHPKPNHLMNFSSLLGYFNPLVHRFCSKTLLEKGQNIALHLIDLSWLKKMGPEGLAELQVAASKAATLAHTGLIKTYLGSFALSILVMILTTQTL
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: 11835..13658
location: region:11835-13658:1
so has part: feature:11835-13658:1:exon

YP_009049089.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11835-13658:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: CYTB
so part of: sequence
location: 13658..14800
location: region:13658-14800:1
so has part: feature:13658-14800:1:exon
subclass of: SO_0000010

19909406
type: Gene
SIO_000068: ncbigene

position:14800:1
position: 14800
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13658-14800:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: CYTB
codon start: 1
transl table: 2
product: cytochrome b
translation: MAPNIRKSHPLLKMINNSLIDLPAPSNISAWWNFGSLLAVCLATQILTGLLLAMHYTADTSLAFSSVANTCRNVQYGWLIRNLHANGASFFFICIYLHIGRGFYYGSYLYKETWNTGVILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSALPYIGQTLVEWAWGGFSVDNPTLTRFFAIHFLLPFLIAGITLVHLTFLHESGSNNPLGIVSDCDKIPFHPYFSFKDILGFILMLTPLMALALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLIPFLHKSKQRTMTFRPLSQLLFWTLVANLLVLTWVGSQPVEHPFIIIGQLASITYFTILLFLFPAVSALENKMLNC
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 13658..14800
location: region:13658-14800:1
so has part: feature:13658-14800:1:exon

YP_009049090.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13658-14800:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Thr
so part of: sequence
location: 14803..14871
location: region:14803-14871:1
so has part: feature:14803-14871:1:region

position:14803:1
position: 14803
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14871:1
position: 14871
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14803-14871:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Pro
so part of: sequence
location: complement(14882..14951)
location: region:14882-14951:-1
so has part: feature:14882-14951:-1:region

position:14882:-1
position: 14882
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14951:-1
position: 14951
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14882-14951:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 219594
gene: ND6
so part of: sequence
location: complement(14962..15483)
location: region:14962-15483:-1
so has part: feature:14962-15483:-1:exon
subclass of: SO_0000010

19909407
type: Gene
SIO_000068: ncbigene

position:14962:-1
position: 14962
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15483:-1
position: 15483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14962-15483:-1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 219594
gene: ND6
codon start: 1
transl table: 2
product: NADH dehydrogenase subunit 6
translation: MTYFVFFLGVCFVVGVLGVASNPSPYYGVVGLVLASVAGCGWLLSLGVSFVALVLFMVYLGGMLVVFVYSVALAAEPFPEAWGDWRVAGYAVALAAVVLAGLVLGGFVGSWGFGVVTVDSVGMFTVRLDFSGVAMLYSRGVGMFLVAGWGLLLTLFVVLELVRGLSRGAIRAV
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: complement(14962..15483)
location: region:14962-15483:-1
so has part: feature:14962-15483:-1:exon

YP_009049091.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14962-15483:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 219594
product: tRNA-Glu
so part of: sequence
location: complement(15484..15551)
location: region:15484-15551:-1
so has part: feature:15484-15551:-1:region

position:15484:-1
position: 15484
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15551:-1
position: 15551
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15484-15551:-1:region