Wolbachia endosymbiont of Corcyra cephalonica isolate SYLI2103 plasmid unnamed1, complete sequence.
type: Entry
definition: Wolbachia endosymbiont of Corcyra cephalonica isolate SYLI2103 plasmid unnamed1, complete sequence.
sequence version: NZ_CP087955.1
sequence date: 2023-08-08
sequence: sequence
division: CON
label: NZ_CP087955.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN23133155
keyword: RefSeq
source: Wolbachia endosymbiont of Corcyra cephalonica
organism: Wolbachia endosymbiont of Corcyra cephalonica
taxonomy: Bacteria; Pseudomonadota; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Wolbachieae; Wolbachia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP087955.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. v0.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 923.0x\nSequencing Technology :: Illumina NovaSeq; PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 08/07/2023 02:55:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,319\nCDSs (total) :: 1,278\nGenes (coding) :: 1,206\nCDSs (with protein) :: 1,206\nGenes (RNA) :: 41\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 34\nncRNAs :: 4\nPseudo Genes (total) :: 72\nCDSs (without protein) :: 72\nPseudo Genes (ambiguous residues) :: 0 of 72\nPseudo Genes (frameshifted) :: 44 of 72\nPseudo Genes (incomplete) :: 44 of 72\nPseudo Genes (internal stop) :: 15 of 72\nPseudo Genes (multiple problems) :: 26 of 72\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 16648
topology: circular
so has quality: SO_0000988
location: 1..16648
location: region:1-16648:1
RO_0002162: 218111

NZ_CP087955
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN23133155
type: BioSample
SIO_000068: biosample

1
title: Genomic analysis of the wCcep Wolbachia strain from Corcyra cephalonica reveals insights into its unique cytoplasmic incompatibility-inducing mechanism
author: Li, Z.
author: Li, J.
journal: Unpublished

2
title: Direct Submission
author: Li, Z.
author: Li, J.
journal: Submitted (15-NOV-2021) College of Plant Protection, China Agricultural University, yuanmingyuanxilu, bejing, haidianqu 100193, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16648:1
position: 16648
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-16648:1:source
so part of: sequence
organism: Wolbachia endosymbiont of Corcyra cephalonica
mol type: genomic DNA
isolate: SYLI2103
host: Corcyra cephalonica
plasmid: unnamed1
country: China
collection date: 2021-03-03

218111
type: Taxonomy
SIO_000068: taxonomy

LOK48_RS06520
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06520
old locus tag: LOK48_06520
so part of: sequence
location: complement(1869..2042)
location: region:1869-2042:-1
so has part: feature:1869-2042:-1:exon
subclass of: SO_0000010

position:1869:-1
position: 1869
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2042:-1
position: 2042
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1869-2042:-1:exon

LOK48_RS06520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06520
old locus tag: LOK48_06520
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQWIKDERRRIKLINMLLELIKIKILGMKPNIGGSPIKFIIDTVRIMFMYKGKELIV
SIO_010081: LOK48_RS06520
subclass of: SO_0000673
so part of: LOK48_RS06520
location: complement(1869..2042)
location: region:1869-2042:-1
so has part: feature:1869-2042:-1:exon

WP_230609296.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1869-2042:-1:exon

LOK48_RS06525
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06525
old locus tag: LOK48_06525
so part of: sequence
location: complement(8240..8455)
location: region:8240-8455:-1
so has part: feature:8240-8455:-1:exon
subclass of: SO_0000010

position:8240:-1
position: 8240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8455:-1
position: 8455
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8240-8455:-1:exon

LOK48_RS06525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06525
old locus tag: LOK48_06525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKFDPKMLSLIENSLYWYSVYCKKEKLIPRVIVRIRDLVESINLFVIMEKWHQVTDAPDLRRIIVFKRGT
SIO_010081: LOK48_RS06525
subclass of: SO_0000673
so part of: LOK48_RS06525
location: complement(8240..8455)
location: region:8240-8455:-1
so has part: feature:8240-8455:-1:exon

WP_230609298.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8240-8455:-1:exon

LOK48_RS06530
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06530
old locus tag: LOK48_06530
pseudo: true
so part of: sequence
location: complement(9579..>10226)
location: region:9579-10226:-1
so has part: feature:9579-10226:-1:exon
subclass of: SO_0000010

position:9579:-1
position: 9579
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10226:-1
position: 10226
reference: sequence
type: ReverseStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9579-10226:-1:exon

LOK48_RS06530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06530
old locus tag: LOK48_06530
inference: COORDINATES: protein motif:HMM:NF012581.2
note: internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: proton-conducting transporter membrane subunit
SIO_010081: LOK48_RS06530
subclass of: SO_0000673
so part of: LOK48_RS06530
location: complement(9579..>10226)
location: region:9579-10226:-1
so has part: feature:9579-10226:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9579-10226:-1:exon

LOK48_RS06535
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06535
old locus tag: LOK48_06535
pseudo: true
so part of: sequence
location: complement(10936..11748)
location: region:10936-11748:-1
so has part: feature:10936-11748:-1:exon
subclass of: SO_0000010

position:10936:-1
position: 10936
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11748:-1
position: 11748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10936-11748:-1:exon

LOK48_RS06535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06535
old locus tag: LOK48_06535
inference: COORDINATES: protein motif:HMM:NF012581.2
note: internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: proton-conducting transporter membrane subunit
SIO_010081: LOK48_RS06535
subclass of: SO_0000673
so part of: LOK48_RS06535
location: complement(10936..11748)
location: region:10936-11748:-1
so has part: feature:10936-11748:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:10936-11748:-1:exon

LOK48_RS06540
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06540
old locus tag: LOK48_06540
so part of: sequence
location: complement(15061..15234)
location: region:15061-15234:-1
so has part: feature:15061-15234:-1:exon
subclass of: SO_0000010

position:15061:-1
position: 15061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15234:-1
position: 15234
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15061-15234:-1:exon

LOK48_RS06540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06540
old locus tag: LOK48_06540
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVIAPARTGKDKINRIVVIKMDQTNKDIWFKFIEQGRILTIVQIKLILPMIEEIPAI
SIO_010081: LOK48_RS06540
subclass of: SO_0000673
so part of: LOK48_RS06540
location: complement(15061..15234)
location: region:15061-15234:-1
so has part: feature:15061-15234:-1:exon

WP_230609292.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15061-15234:-1:exon

LOK48_RS06545
type: Gene
subclass of: SO_0000704
RO_0002162: 218111
locus tag: LOK48_RS06545
old locus tag: LOK48_06545
so part of: sequence
location: complement(15481..15708)
location: region:15481-15708:-1
so has part: feature:15481-15708:-1:exon
subclass of: SO_0000010

position:15481:-1
position: 15481
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15708:-1
position: 15708
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15481-15708:-1:exon

LOK48_RS06545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 218111
locus tag: LOK48_RS06545
old locus tag: LOK48_06545
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MISREELARIIPVTPPRENKKINPEFHKLVTLECIIDPDMVVSQEKILIPVGMAIIIVAVVKYARESTSIPTVNI
SIO_010081: LOK48_RS06545
subclass of: SO_0000673
so part of: LOK48_RS06545
location: complement(15481..15708)
location: region:15481-15708:-1
so has part: feature:15481-15708:-1:exon

WP_230609294.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15481-15708:-1:exon