Halobaculum roseum strain CGMCC 1.15501 plasmid unnamed3, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halobaculum.
Halobaculum rubrum sp. nov. isolated from an inland salt lak
Submitted (27-AUG-2021) School of Food and Biological Engineering, Jiangsu University, No. 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP082289.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 925.63x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:19:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,782\nCDSs (total) :: 3,718\nGenes (coding) :: 3,670\nCDSs (with protein) :: 3,670\nGenes (RNA) :: 64\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 2\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 16 of 48\nPseudo Genes (incomplete) :: 39 of 48\nPseudo Genes (internal stop) :: 6 of 48\nPseudo Genes (multiple problems) :: 12 of 48\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008313916.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004966858.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183428.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006077804.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018257777.1
GO:0008490 - arsenite secondary active transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013607.2
low molecular weight phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008014316.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594626.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364385.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364388.1
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364390.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594621.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008848061.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387748.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594617.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594616.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594615.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594614.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594613.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0009055 - electron transfer activity [Evidence IEA]
plastocyanin/azurin family copper-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594612.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048650.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048649.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594609.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011844707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594607.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008002768.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF016130.2
COORDINATES: similar to AA sequence:RefSeq:WP_011222412.1
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594603.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594602.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054258.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308331.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222451.1
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004048647.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008005422.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594594.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594592.1
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222419.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515577.1
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008364398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183484.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183483.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183511.1
COORDINATES: similar to AA sequence:RefSeq:WP_012943191.1
COORDINATES: similar to AA sequence:RefSeq:WP_008418820.1
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF025700.2
COORDINATES: protein motif:HMM:NF016047.2
cell wall-binding repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007982608.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009487679.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881843.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007977256.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432891.1
GO:0005267 - potassium channel activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006432890.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011222424.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594579.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004594578.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594577.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594575.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_014051874.1
COORDINATES: similar to AA sequence:RefSeq:WP_004518545.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594571.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: protein motif:HMM:NF014566.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0071586 - CAAX-box protein processing [Evidence IEA]
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594569.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004594568.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594566.1
TFIIB-type zinc ribbon-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594565.1
COORDINATES: similar to AA sequence:RefSeq:WP_008387949.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594563.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594562.1
COORDINATES: similar to AA sequence:RefSeq:WP_008523610.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594560.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
cation diffusion facilitator family transporter
COORDINATES: similar to AA sequence:RefSeq:WP_004594559.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594558.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594557.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594556.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594555.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594554.1
COORDINATES: similar to AA sequence:RefSeq:WP_009365844.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594552.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378317.1
twin-arginine translocation signal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004594550.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594549.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594548.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053092.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594541.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592043.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592042.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594537.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594536.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594535.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594534.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222440.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594522.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594521.1
COORDINATES: similar to AA sequence:RefSeq:WP_008443524.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517773.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594519.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594528.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517770.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517762.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014557028.1
COORDINATES: similar to AA sequence:RefSeq:WP_006433271.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594506.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048595.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444945.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825398.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825399.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183447.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594499.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183361.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048585.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580586.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008444956.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524600.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524598.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524597.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184805.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524593.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594491.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183436.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222467.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222468.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594486.1
GO:0016152 - mercury (II) reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012659227.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012659225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444978.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008524579.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184813.1
COORDINATES: similar to AA sequence:RefSeq:WP_006184814.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_006092956.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007276461.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
COORDINATES: protein motif:HMM:NF013006.2
NFYB/HAP3 family transcription factor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006182478.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054132.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233855.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006183520.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825236.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557033.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1