Halobaculum roseum strain CGMCC 1.15501 plasmid unnamed1, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Halobaculum.
Halobaculum rubrum sp. nov. isolated from an inland salt lak
Submitted (27-AUG-2021) School of Food and Biological Engineering, Jiangsu University, No. 301 Xuefu Road, Jingkou District, Zhenjiang, Jiangsu 212013, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP082287.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 4\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 925.63x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 07/30/2023 11:19:40\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,782\nCDSs (total) :: 3,718\nGenes (coding) :: 3,670\nCDSs (with protein) :: 3,670\nGenes (RNA) :: 64\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 56\nncRNAs :: 2\nPseudo Genes (total) :: 48\nCDSs (without protein) :: 48\nPseudo Genes (ambiguous residues) :: 0 of 48\nPseudo Genes (frameshifted) :: 16 of 48\nPseudo Genes (incomplete) :: 39 of 48\nPseudo Genes (internal stop) :: 6 of 48\nPseudo Genes (multiple problems) :: 12 of 48\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008387649.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008458671.1
COORDINATES: protein motif:HMM:NF016831.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007980366.1
adenine deaminase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007188052.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865890.1
phage integrase SAM-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865891.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014865892.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006184771.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364405.1
GO:0009318 - exodeoxyribonuclease VII complex [Evidence IEA]
GO:0008855 - exodeoxyribonuclease VII activity [Evidence IEA]
GO:0006308 - DNA catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008364406.1
COORDINATES: similar to AA sequence:RefSeq:WP_008364407.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053094.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053095.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865899.1
COORDINATES: similar to AA sequence:RefSeq:WP_008457989.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444896.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904033.1
COORDINATES: similar to AA sequence:RefSeq:WP_009762230.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865841.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458711.1
COORDINATES: similar to AA sequence:RefSeq:WP_007143091.1
COORDINATES: similar to AA sequence:RefSeq:WP_010904232.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881810.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580532.1
COORDINATES: similar to AA sequence:RefSeq:WP_008580534.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053235.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053236.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048615.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182403.1
GO:0004803 - transposase activity [Evidence IEA]
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008309074.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053422.1
COORDINATES: similar to AA sequence:RefSeq:WP_005555660.1
GO:0004427 - inorganic diphosphate phosphatase activity [Evidence IEA]
manganese-dependent inorganic pyrophosphatase
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: similar to AA sequence:RefSeq:WP_006651152.1
COORDINATES: similar to AA sequence:RefSeq:WP_008094607.1
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006882720.1
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007976407.1
COORDINATES: similar to AA sequence:RefSeq:WP_015789271.1
GO:0006813 - potassium ion transport [Evidence IEA]
TrkA C-terminal domain-containing protein
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_007979696.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979694.1
GO:1903425 - fluoride transmembrane transporter activity [Evidence IEA]
GO:1903424 - fluoride transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008388025.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006184794.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_005040625.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667266.1
COORDINATES: similar to AA sequence:RefSeq:WP_006667271.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006667272.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594406.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865851.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183366.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048584.1
COORDINATES: protein motif:HMM:TIGR04126.1
PGF-CTERM sorting domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007276530.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011572285.1
COORDINATES: similar to AA sequence:RefSeq:WP_014865863.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008309913.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004045944.1
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014863781.1
COORDINATES: similar to AA sequence:RefSeq:WP_013881859.1
GO:0004519 - endonuclease activity [Evidence IEA]
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014053305.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458763.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966420.1
COORDINATES: similar to AA sequence:RefSeq:WP_008458767.1
COORDINATES: similar to AA sequence:RefSeq:WP_004968161.1
COORDINATES: similar to AA sequence:RefSeq:WP_005558189.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183436.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183342.1
COORDINATES: similar to AA sequence:RefSeq:WP_004517739.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183341.1
COORDINATES: protein motif:HMM:NF024431.2
COORDINATES: similar to AA sequence:RefSeq:WP_013881869.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006114742.1
COORDINATES: similar to AA sequence:RefSeq:WP_006114743.1
COORDINATES: similar to AA sequence:RefSeq:WP_007274158.1
COORDINATES: similar to AA sequence:RefSeq:WP_006114745.1
COORDINATES: similar to AA sequence:RefSeq:WP_008097104.1
GO:0050334 - thiaminase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007140130.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_017342099.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
thiamine-phosphate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006825214.1
COORDINATES: similar to AA sequence:RefSeq:WP_006054726.1
COORDINATES: similar to AA sequence:RefSeq:WP_008444941.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446344.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608490.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324396.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008443531.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048613.1
COORDINATES: similar to AA sequence:RefSeq:WP_008846865.1
type IV toxin-antitoxin system AbiEi family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_007344137.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514850.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514849.1
COORDINATES: similar to AA sequence:RefSeq:WP_006431778.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_007189769.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189770.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557034.1
COORDINATES: similar to AA sequence:RefSeq:WP_008446347.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_014865875.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183586.1
COORDINATES: similar to AA sequence:RefSeq:WP_004054293.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015499 - formate transmembrane transporter activity [Evidence IEA]
GO:0015724 - formate transport [Evidence IEA]
formate/nitrite transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006078555.1
COORDINATES: similar to AA sequence:RefSeq:WP_006629965.1
COORDINATES: similar to AA sequence:RefSeq:WP_004514844.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035178.1
COORDINATES: similar to AA sequence:RefSeq:WP_008572896.1
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF014758.2
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012873229.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013134.2
xanthine dehydrogenase family protein subunit M
COORDINATES: protein motif:HMM:TIGR00369.1
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040043.1
COORDINATES: similar to AA sequence:RefSeq:WP_013275212.1
GO:0042925 - benzoate transmembrane transporter activity [Evidence IEA]
GO:0042919 - benzoate transport [Evidence IEA]
benzoate/H(+) symporter BenE family transporter
COORDINATES: protein motif:HMM:NF017999.2
COORDINATES: similar to AA sequence:RefSeq:WP_006075790.1
COORDINATES: protein motif:HMM:NF024214.2
COORDINATES: similar to AA sequence:RefSeq:WP_008015529.1
COORDINATES: similar to AA sequence:RefSeq:WP_015408486.1
COORDINATES: similar to AA sequence:RefSeq:WP_008528502.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344019.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181499.1
COORDINATES: similar to AA sequence:RefSeq:WP_008320871.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010901974.1
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_007344156.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006885277.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847785.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885577.1
COORDINATES: similar to AA sequence:RefSeq:WP_014051375.1
COORDINATES: similar to AA sequence:RefSeq:WP_015790189.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557022.1
COORDINATES: similar to AA sequence:RefSeq:WP_006165229.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313223.1
COORDINATES: similar to AA sequence:RefSeq:WP_006183596.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024117.2
COORDINATES: similar to AA sequence:RefSeq:WP_006181788.1
TaqI-like C-terminal specificity domain-containing protein
COORDINATES: protein motif:HMM:NF024976.2
type I restriction enzyme HsdR N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF019814.2
COORDINATES: similar to AA sequence:RefSeq:WP_014053517.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057320.1
COORDINATES: protein motif:HMM:NF025448.2
COORDINATES: similar to AA sequence:RefSeq:WP_018257642.1
COORDINATES: similar to AA sequence:RefSeq:WP_013878400.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971372.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008327227.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572759.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004060441.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890448.1
COORDINATES: similar to AA sequence:RefSeq:WP_020221058.1
COORDINATES: similar to AA sequence:RefSeq:WP_014732632.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_005043648.1
COORDINATES: similar to AA sequence:RefSeq:WP_006825213.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006630676.1
COORDINATES: similar to AA sequence:RefSeq:WP_008015317.1
COORDINATES: similar to AA sequence:RefSeq:WP_008577303.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048645.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007693200.1
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007699871.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004043411.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488131.1
COORDINATES: similar to AA sequence:RefSeq:WP_004599327.1
bacterio-opsin activator domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004599328.1
rubrerythrin-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008385331.1
GO:0016639 - oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006666180.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043364.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008458786.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004213851.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213849.1
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008387653.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885431.1
COORDINATES: similar to AA sequence:RefSeq:WP_012660040.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885428.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885427.1
COORDINATES: similar to AA sequence:RefSeq:WP_006885426.1
COORDINATES: similar to AA sequence:RefSeq:WP_049897225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048679.1
type II restriction endonuclease subunit M
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014053516.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571096.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_008584015.1
tRNA (cytidine(56)-2'-O)-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_008013335.1
COORDINATES: similar to AA sequence:RefSeq:WP_008574128.1
GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009374512.1
COORDINATES: similar to AA sequence:RefSeq:WP_007979373.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015323269.1
COORDINATES: similar to AA sequence:RefSeq:WP_004969904.1
COORDINATES: similar to AA sequence:RefSeq:WP_014557033.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516371.1