Saccharobesus litoralis strain CCB-QB4 plasmid unnamed1, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Saccharobesus.
Genome sequence of a Cantenovulum-like bacteria
Submitted (25-JAN-2018) Centre of Chemical Biology, University Sains Malaysia, 10, Persiaran Bukit Jambul, Bayan Lepas, Penang 11900, Malaysia
REFSEQ INFORMATION: The reference sequence is identical to\nCP026605.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP3 v. SMRT analysis v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 280.0x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/16/2022 03:40:00\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,456\nCDSs (total) :: 4,369\nGenes (coding) :: 4,311\nCDSs (with protein) :: 4,311\nGenes (RNA) :: 87\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 62\nncRNAs :: 4\nPseudo Genes (total) :: 58\nCDSs (without protein) :: 58\nPseudo Genes (ambiguous residues) :: 0 of 58\nPseudo Genes (frameshifted) :: 7 of 58\nPseudo Genes (incomplete) :: 54 of 58\nPseudo Genes (internal stop) :: 4 of 58\nPseudo Genes (multiple problems) :: 6 of 58\nCRISPR Arrays :: 5\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_010904455.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012822233.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009029636.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004908657.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004295476.1
COORDINATES: similar to AA sequence:RefSeq:WP_008466696.1
COORDINATES: similar to AA sequence:RefSeq:WP_010389204.1
GO:0008733 - L-arabinose isomerase activity [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018983741.1
COORDINATES: similar to AA sequence:RefSeq:WP_011467255.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
phosphate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF015431.2
COORDINATES: similar to AA sequence:RefSeq:WP_011770938.1
COORDINATES: similar to AA sequence:RefSeq:WP_000681609.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_005653200.1
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012587005.1
COORDINATES: protein motif:HMM:NF012546.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: similar to AA sequence:RefSeq:WP_012275971.1
GO:0004802 - transketolase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016954310.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016954309.1
COORDINATES: similar to AA sequence:RefSeq:WP_013071415.1
COORDINATES: protein motif:HMM:NF019349.2
FadR/GntR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_016954115.1
GO:0015486 - glycoside-pentoside-hexuronide:cation symporter activity [Evidence IEA]
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0006812 - cation transport [Evidence IEA]
glycoside-pentoside-hexuronide (GPH):cation symporter
COORDINATES: similar to AA sequence:RefSeq:WP_016954117.1
COORDINATES: similar to AA sequence:RefSeq:WP_016954116.1
COORDINATES: similar to AA sequence:RefSeq:WP_011789286.1
COORDINATES: similar to AA sequence:RefSeq:WP_018983731.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957737.1
COORDINATES: similar to AA sequence:RefSeq:WP_016954113.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011468183.1
GO:0005576 - extracellular region [Evidence IEA]
GO:0030570 - pectate lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007376805.1
COORDINATES: protein motif:HMM:NF014850.2
COORDINATES: similar to AA sequence:RefSeq:WP_019808861.1
type II toxin-antitoxin system HipA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004744160.1
COORDINATES: similar to AA sequence:RefSeq:WP_008135549.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016954107.1
COORDINATES: similar to AA sequence:RefSeq:WP_018277298.1
COORDINATES: similar to AA sequence:RefSeq:WP_013958574.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033592.1
COORDINATES: similar to AA sequence:RefSeq:WP_012069449.1
COORDINATES: similar to AA sequence:RefSeq:WP_017446788.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015030704.1
COORDINATES: similar to AA sequence:RefSeq:WP_016955028.1
COORDINATES: similar to AA sequence:RefSeq:WP_016954570.1
COORDINATES: similar to AA sequence:RefSeq:WP_012089951.1
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: similar to AA sequence:RefSeq:WP_016956132.1
COORDINATES: similar to AA sequence:RefSeq:WP_012587001.1
COORDINATES: protein motif:HMM:NF019365.2
GO:0015926 - glucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016957630.1
COORDINATES: similar to AA sequence:RefSeq:WP_016708713.1
RpiB/LacA/LacB family sugar-phosphate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_003855844.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_012486661.1
COORDINATES: similar to AA sequence:RefSeq:WP_007349577.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: protein motif:HMM:NF017300.2
GO:0006274 - DNA replication termination [Evidence IEA]
DNA replication terminus site-binding protein
COORDINATES: protein motif:HMM:NF016330.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025323.2
type II toxin-antitoxin system YafO family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_016956127.1
COORDINATES: protein motif:HMM:NF012801.2
COORDINATES: protein motif:HMM:NF024777.2
COORDINATES: protein motif:HMM:NF013460.2
GO:0009055 - electron transfer activity [Evidence IEA]
cytochrome b/b6 domain-containing protein
COORDINATES: protein motif:HMM:NF013487.2
COORDINATES: similar to AA sequence:RefSeq:WP_008446170.1
COORDINATES: similar to AA sequence:RefSeq:WP_020167228.1
DUF1549 and DUF1553 domain-containing protein
COORDINATES: protein motif:HMM:NF019113.2
COORDINATES: protein motif:HMM:NF014653.2
COORDINATES: protein motif:HMM:NF018190.2
carbohydrate binding family 9 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010553342.1
COORDINATES: similar to AA sequence:RefSeq:WP_006645195.1
type II toxin-antitoxin system antitoxin HipB
COORDINATES: similar to AA sequence:RefSeq:WP_001125439.1
COORDINATES: protein motif:HMM:NF013276.2
GO:0030599 - pectinesterase activity [Evidence IEA]
GO:0042545 - cell wall modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008608816.1
COORDINATES: similar to AA sequence:RefSeq:WP_010178010.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956498.1
COORDINATES: similar to AA sequence:RefSeq:WP_016956497.1
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006795632.1
GO:0008697 - 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
5-dehydro-4-deoxy-D-glucuronate isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_014976831.1
GO:0008678 - 2-deoxy-D-gluconate 3-dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0000272 - polysaccharide catabolic process [Evidence IEA]
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD
COORDINATES: similar to AA sequence:RefSeq:WP_008608828.1
COORDINATES: similar to AA sequence:RefSeq:WP_019392528.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_016957595.1
COORDINATES: similar to AA sequence:RefSeq:WP_013786003.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957833.1
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007987300.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_016957831.1
COORDINATES: protein motif:HMM:NF024778.2
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016957829.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
nickel pincer cofactor biosynthesis protein LarB
COORDINATES: similar to AA sequence:RefSeq:WP_016957828.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957826.1
GO:0050043 - lactate racemase activity [Evidence IEA]
lactate racemase domain-containing protein
COORDINATES: protein motif:HMM:TIGR01313.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008486149.1
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014998182.1
GO:0016668 - oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor [Evidence IEA]
GO:0009398 - FMN biosynthetic process [Evidence IEA]; GO:0006805 - xenobiotic metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003656441.1
GO:0102039 - NADH-dependent peroxiredoxin activity [Evidence IEA]
GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007232823.1
hydrogen peroxide-inducible genes activator
COORDINATES: protein motif:HMM:NF025156.2
COORDINATES: similar to AA sequence:RefSeq:WP_007644707.1
COORDINATES: similar to AA sequence:RefSeq:WP_016955809.1
COORDINATES: similar to AA sequence:RefSeq:WP_020297016.1
COORDINATES: similar to AA sequence:RefSeq:WP_010955211.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010379420.1
COORDINATES: similar to AA sequence:RefSeq:WP_009627139.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017446774.1
COORDINATES: similar to AA sequence:RefSeq:WP_011469567.1
COORDINATES: similar to AA sequence:RefSeq:WP_007375321.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957526.1
COORDINATES: protein motif:HMM:NF019474.2
COORDINATES: protein motif:HMM:NF012516.2
GO:0004650 - polygalacturonase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008614931.1
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020738798.1
COORDINATES: similar to AA sequence:RefSeq:WP_016957128.1
COORDINATES: similar to AA sequence:RefSeq:WP_008897554.1
COORDINATES: similar to AA sequence:RefSeq:WP_014949929.1
GO:0004645 - 1,4-alpha-oligoglucan phosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024242.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011848238.1
COORDINATES: similar to AA sequence:RefSeq:WP_016707061.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2