Gemmobacter aquarius strain HYN0069 plasmid unnamed2, complete sequence.
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Gemmobacter.
Submitted (17-APR-2018) College of Health Science, Korea University, Anam-ro 145, Seoul 02841, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP028920.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. v2.3\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 221.67x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/16/2022 03:16:07\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,135\nCDSs (total) :: 4,070\nGenes (coding) :: 3,916\nCDSs (with protein) :: 3,916\nGenes (RNA) :: 65\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 53\nncRNAs :: 3\nPseudo Genes (total) :: 154\nCDSs (without protein) :: 154\nPseudo Genes (ambiguous residues) :: 0 of 154\nPseudo Genes (frameshifted) :: 105 of 154\nPseudo Genes (incomplete) :: 61 of 154\nPseudo Genes (internal stop) :: 9 of 154\nPseudo Genes (multiple problems) :: 17 of 154\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008231077.1
frameshifted; incomplete; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007424879.1
GO:0043819 - precorrin-6A synthase (deacetylating) activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005981989.1
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003610535.1
GO:0042242 - cobyrinic acid a,c-diamide synthase activity [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017998764.1
GO:0046026 - precorrin-4 C11-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010406253.1
COORDINATES: similar to AA sequence:RefSeq:WP_002719984.1
GO:0046025 - precorrin-6Y C5,15-methyltransferase (decarboxylating) activity [Evidence IEA]
GO:0046140 - corrin biosynthetic process [Evidence IEA]
precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE
COORDINATES: similar to AA sequence:RefSeq:WP_013067766.1
GO:0016994 - precorrin-6A reductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013067767.1
GO:0030789 - precorrin-3B C17-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010393429.1
GO:0030788 - precorrin-2 C20-methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014496544.1
GO:0016993 - precorrin-8X methylmutase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015687213.1
GO:0016709 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen [Evidence IEA]
GO:0019250 - aerobic cobalamin biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011086047.1
COORDINATES: similar to AA sequence:RefSeq:WP_019298450.1
COORDINATES: similar to AA sequence:RefSeq:WP_007593166.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_011748809.1
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002720982.1
GO:0003824 - catalytic activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011907450.1
pyridoxal phosphate-dependent class II aminotransferase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_010969508.1
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]; GO:0032363 - FMN catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008336115.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009807475.1
Mu transposase C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007803215.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803213.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827262.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008030629.1
COORDINATES: similar to AA sequence:RefSeq:WP_011909417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398612.1
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
multicopper oxidase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009819817.1
COORDINATES: similar to AA sequence:RefSeq:WP_007817281.1
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: similar to AA sequence:RefSeq:WP_013384122.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030626.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030624.1
COORDINATES: similar to AA sequence:RefSeq:WP_009811941.1
COORDINATES: similar to AA sequence:RefSeq:WP_009807490.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005850831.1
COORDINATES: similar to AA sequence:RefSeq:WP_009570666.1
COORDINATES: similar to AA sequence:RefSeq:WP_005976864.1
COORDINATES: similar to AA sequence:RefSeq:WP_017927543.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030623.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008030622.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0046914 - transition metal ion binding [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
manganese-binding transcriptional regulator MntR
COORDINATES: similar to AA sequence:RefSeq:WP_008030621.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030619.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019645583.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF016107.2
COORDINATES: similar to AA sequence:RefSeq:WP_019965548.1
COORDINATES: similar to AA sequence:RefSeq:WP_010397158.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008030608.1
COORDINATES: similar to AA sequence:RefSeq:WP_015886967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007120879.1
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012631184.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
CusA/CzcA family heavy metal efflux RND transporter
COORDINATES: similar to AA sequence:RefSeq:WP_012187317.1
COORDINATES: similar to AA sequence:RefSeq:WP_009815008.1
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: protein motif:HMM:NF016957.2
VirB3 family type IV secretion system protein
COORDINATES: protein motif:HMM:NF015118.2
COORDINATES: protein motif:HMM:NF013618.2
COORDINATES: protein motif:HMM:NF019608.2
COORDINATES: protein motif:HMM:NF016491.2
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: protein motif:HMM:NF015487.2
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_008335602.1
COORDINATES: protein motif:HMM:NF014581.2
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004576825.1
GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003290589.1
COORDINATES: similar to AA sequence:RefSeq:WP_011090936.1
COORDINATES: protein motif:HMM:NF037530.2
COORDINATES: similar to AA sequence:RefSeq:WP_009803673.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008994200.1
COORDINATES: protein motif:HMM:NF015642.2
COORDINATES: protein motif:HMM:NF015397.2
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF017524.2
plasmid mobilization relaxosome protein MobC
COORDINATES: protein motif:HMM:NF018691.2
COORDINATES: similar to AA sequence:RefSeq:WP_013040315.1
COORDINATES: similar to AA sequence:RefSeq:WP_018001763.1
COORDINATES: similar to AA sequence:RefSeq:WP_009179450.1
COORDINATES: similar to AA sequence:RefSeq:WP_013479731.1
COORDINATES: similar to AA sequence:RefSeq:WP_018006749.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_019562445.1
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018403877.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008492786.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030512.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827196.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398702.1
COORDINATES: similar to AA sequence:RefSeq:WP_009820102.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398697.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030520.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030522.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803278.1
antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009820093.1
COORDINATES: similar to AA sequence:RefSeq:WP_008335997.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859716.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803272.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030536.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065906.1
COORDINATES: similar to AA sequence:RefSeq:WP_009827208.1
COORDINATES: similar to AA sequence:RefSeq:WP_012866382.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_019610894.1
COORDINATES: similar to AA sequence:RefSeq:WP_005859736.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030548.1
COORDINATES: similar to AA sequence:RefSeq:WP_006473457.1
IS1380-like element IS1247 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001747810.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018426325.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221011.1
tetracycline efflux MFS transporter Tet(G)
COORDINATES: similar to AA sequence:RefSeq:YP_005221012.1
tetracycline resistance transcriptional repressor TetR(G)
COORDINATES: similar to AA sequence:RefSeq:WP_000259026.1
COORDINATES: similar to AA sequence:RefSeq:WP_000214125.1
chloramphenicol/florfenicol efflux MFS transporter FloR
COORDINATES: protein motif:HMM:NF023271.2
COORDINATES: similar to AA sequence:RefSeq:WP_018426329.1
COORDINATES: similar to AA sequence:RefSeq:WP_018631768.1
COORDINATES: similar to AA sequence:RefSeq:WP_018426331.1
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010398665.1
COORDINATES: similar to AA sequence:RefSeq:WP_007677508.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013844596.1
GO:0051983 - regulation of chromosome segregation [Evidence IEA]
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009827215.1
COORDINATES: similar to AA sequence:RefSeq:WP_010398657.1
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_009827217.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030559.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030564.1
COORDINATES: similar to AA sequence:RefSeq:WP_010138187.1
COORDINATES: similar to AA sequence:RefSeq:WP_008030567.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956735.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001188957.1
GO:0008902 - hydroxymethylpyrimidine kinase activity [Evidence IEA]; GO:0008972 - phosphomethylpyrimidine kinase activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_019956736.1
GO:0004789 - thiamine-phosphate diphosphorylase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011841584.1
GO:0004417 - hydroxyethylthiazole kinase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_019956738.1
COORDINATES: similar to AA sequence:RefSeq:WP_019954435.1
COORDINATES: similar to AA sequence:RefSeq:WP_008314743.1
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
COORDINATES: similar to AA sequence:RefSeq:WP_008961502.1
zinc ABC transporter ATP-binding protein AztA
COORDINATES: similar to AA sequence:RefSeq:WP_008187596.1
COORDINATES: similar to AA sequence:RefSeq:WP_018387494.1
GO:0046872 - metal ion binding [Evidence IEA]
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_019956223.1
COORDINATES: protein motif:HMM:NF020431.2
COORDINATES: similar to AA sequence:RefSeq:WP_005859760.1
COORDINATES: similar to AA sequence:RefSeq:WP_015498712.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956226.1
COORDINATES: similar to AA sequence:RefSeq:WP_019956225.1
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_008206314.1
COORDINATES: similar to AA sequence:RefSeq:WP_009504257.1
COORDINATES: similar to AA sequence:RefSeq:WP_005850091.1
COORDINATES: similar to AA sequence:RefSeq:WP_007424883.1
COORDINATES: similar to AA sequence:RefSeq:WP_018065890.1
COORDINATES: similar to AA sequence:RefSeq:WP_007803448.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010138178.1
COORDINATES: similar to AA sequence:RefSeq:WP_009503821.1
COORDINATES: protein motif:HMM:NF013715.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009573580.1