Klebsiella huaxiensis strain WCHKl090001 plasmid p1_090001, complete sequence.
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
Klebsiella huaxiensis sp. nov., recovered from human urine
Submitted (15-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (03-APR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP036176.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 11/30/2022 06:30:31\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,932\nCDSs (total) :: 5,812\nGenes (coding) :: 5,686\nCDSs (with protein) :: 5,686\nGenes (RNA) :: 120\nrRNAs :: 9, 8, 8 (5S, 16S, 23S)\ncomplete rRNAs :: 9, 8, 8 (5S, 16S, 23S)\ntRNAs :: 85\nncRNAs :: 10\nPseudo Genes (total) :: 126\nCDSs (without protein) :: 126\nPseudo Genes (ambiguous residues) :: 0 of 126\nPseudo Genes (frameshifted) :: 46 of 126\nPseudo Genes (incomplete) :: 95 of 126\nPseudo Genes (internal stop) :: 21 of 126\nPseudo Genes (multiple problems) :: 29 of 126\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_017900946.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_016528858.1
COORDINATES: similar to AA sequence:RefSeq:WP_007871804.1
COORDINATES: similar to AA sequence:RefSeq:WP_020801688.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001568530.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000647571.1
COORDINATES: similar to AA sequence:RefSeq:WP_000790485.1
COORDINATES: similar to AA sequence:RefSeq:WP_003032875.1
copper/silver sensor histidine kinase SilS
COORDINATES: similar to AA sequence:RefSeq:WP_001572351.1
copper/silver response regulator transcription factor SilR
COORDINATES: similar to AA sequence:RefSeq:WP_001572989.1
Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC
COORDINATES: similar to AA sequence:RefSeq:WP_009654303.1
COORDINATES: similar to AA sequence:RefSeq:WP_017146627.1
Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit SilB
COORDINATES: similar to AA sequence:RefSeq:WP_011711636.1
Cu(+)/Ag(+) efflux RND transporter permease subunit SilA
COORDINATES: similar to AA sequence:RefSeq:WP_002436620.1
COORDINATES: similar to AA sequence:RefSeq:WP_008322814.1
COORDINATES: similar to AA sequence:RefSeq:WP_000843499.1
COORDINATES: similar to AA sequence:RefSeq:WP_002436617.1
peptidoglycan DD-metalloendopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004388333.1
COORDINATES: similar to AA sequence:RefSeq:WP_001480786.1
COORDINATES: similar to AA sequence:RefSeq:WP_001378118.1
copper resistance outer membrane transporter PcoB
COORDINATES: similar to AA sequence:RefSeq:WP_004098941.1
copper resistance system metallochaperone PcoC
COORDINATES: similar to AA sequence:RefSeq:WP_004098940.1
copper resistance inner membrane protein PcoD
transcriptional regulator responding to pcoS and pcoS*
COORDINATES: similar to AA sequence:RefSeq:WP_020239536.1
copper response regulator transcription factor PcoR
COORDINATES: similar to AA sequence:RefSeq:WP_001211179.1
copper resistance membrane spanning protein PcoS
COORDINATES: similar to AA sequence:RefSeq:WP_000723069.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152086.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011906492.1
type II toxin-antitoxin system ParD family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009654315.1
COORDINATES: similar to AA sequence:RefSeq:WP_012669180.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540106.1
COORDINATES: similar to AA sequence:RefSeq:WP_009310051.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118694.1
COORDINATES: similar to AA sequence:RefSeq:WP_020805591.1
COORDINATES: similar to AA sequence:RefSeq:WP_004197807.1
COORDINATES: similar to AA sequence:RefSeq:WP_002208622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004152107.1
COORDINATES: similar to AA sequence:RefSeq:WP_000019445.1
GO:0004803 - transposase activity [Evidence IEA]
IS5-like element ISKpn26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004152108.1
COORDINATES: similar to AA sequence:RefSeq:WP_004213599.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540079.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611902.1
COORDINATES: similar to AA sequence:RefSeq:WP_003032641.1
COORDINATES: similar to AA sequence:RefSeq:WP_003296361.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611102.1
GO:0015074 - DNA integration [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
integrase core domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003032086.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612066.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001219642.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]
Cd(II)/Pb(II)-responsive transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014702287.1
GO:0008324 - cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013504665.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076612056.1
ISL3-like element ISPpu12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001743396.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS1-like element IS1A family transposase
COORDINATES: protein motif:HMM:NF012457.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001549957.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020326821.1
Tn3-like element Tn5403 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011846847.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004878189.1
COORDINATES: similar to AA sequence:RefSeq:WP_004206572.1
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020192026.1
COORDINATES: similar to AA sequence:RefSeq:WP_012540054.1
arsenical efflux pump membrane protein ArsB
COORDINATES: similar to AA sequence:RefSeq:WP_000065799.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_086558215.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372656.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000928911.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000043178.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_007463798.1
COORDINATES: similar to AA sequence:RefSeq:WP_013095208.1
COORDINATES: similar to AA sequence:RefSeq:WP_001137910.1
COORDINATES: similar to AA sequence:RefSeq:WP_019677824.1
COORDINATES: similar to AA sequence:RefSeq:WP_011734096.1
COORDINATES: similar to AA sequence:RefSeq:WP_003056109.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_012204557.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_001647051.1
COORDINATES: similar to AA sequence:RefSeq:WP_019077272.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_002462980.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611474.1
COORDINATES: similar to AA sequence:RefSeq:WP_011839967.1
COORDINATES: similar to AA sequence:RefSeq:WP_007370961.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606053.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007749362.1
COORDINATES: similar to AA sequence:RefSeq:WP_013012058.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372634.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372635.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372636.1
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
COORDINATES: similar to AA sequence:RefSeq:WP_013095196.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0015446 - ATPase-coupled arsenite transmembrane transporter activity [Evidence IEA]
GO:0071722 - detoxification of arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000855179.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_013095198.1
COORDINATES: similar to AA sequence:RefSeq:WP_001114073.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013095200.1
COORDINATES: similar to AA sequence:RefSeq:WP_014236067.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_013095204.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372646.1
COORDINATES: similar to AA sequence:RefSeq:WP_007372647.1
COORDINATES: similar to AA sequence:RefSeq:WP_001066652.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786570.1
COORDINATES: similar to AA sequence:RefSeq:WP_020091927.1
COORDINATES: similar to AA sequence:RefSeq:WP_010911152.1
COORDINATES: similar to AA sequence:RefSeq:WP_016239947.1
COORDINATES: similar to AA sequence:RefSeq:WP_004119118.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0071705 - nitrogen compound transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009653904.1
GO:0006276 - plasmid maintenance [Evidence IEA]
incFII family plasmid replication initiator RepA
COORDINATES: similar to AA sequence:RefSeq:WP_012615301.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001473586.1
COORDINATES: similar to AA sequence:RefSeq:NP_417960.1
COORDINATES: similar to AA sequence:RefSeq:WP_004118473.1
COORDINATES: similar to AA sequence:RefSeq:WP_009654058.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229757.1
COORDINATES: similar to AA sequence:RefSeq:WP_020314632.1
COORDINATES: similar to AA sequence:RefSeq:WP_017694197.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229762.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229763.1
COORDINATES: similar to AA sequence:RefSeq:NP_490548.1
COORDINATES: similar to AA sequence:RefSeq:YP_005229766.1
COORDINATES: similar to AA sequence:RefSeq:WP_020804879.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_004152715.1
COORDINATES: similar to AA sequence:RefSeq:WP_020317126.1
COORDINATES: similar to AA sequence:RefSeq:WP_000817026.1
ParB/RepB/Spo0J family plasmid partition protein
COORDINATES: similar to AA sequence:RefSeq:NP_052640.1