Staphylococcus nepalensis strain JS11 plasmid pSNJS1102, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Complete genome sequence of Staphylococcus nepalensis JS11
Submitted (30-SEP-2016) Fermentation and Functionality, Korea Food Research Institute, 516, Baekhyun-dong, Bundan-gu, Sungnam 463-746, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP017468.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.3.0\nAssembly Name :: FALCON 0.3.0\nGenome Coverage :: 63x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:03:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,910\nCDSs (total) :: 2,828\nGenes (coding) :: 2,776\nCDSs (with protein) :: 2,776\nGenes (RNA) :: 82\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 28 of 52\nPseudo Genes (incomplete) :: 22 of 52\nPseudo Genes (internal stop) :: 21 of 52\nPseudo Genes (multiple problems) :: 14 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002484659.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002459199.1
COORDINATES: similar to AA sequence:RefSeq:WP_002512172.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002512171.1
COORDINATES: similar to AA sequence:RefSeq:WP_002456912.1
COORDINATES: protein motif:HMM:NF022117.2
BppU family phage baseplate upper protein
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002462648.1
COORDINATES: similar to AA sequence:RefSeq:WP_002498290.1
prophage endopeptidase tail family protein
COORDINATES: protein motif:HMM:NF017520.2
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:TIGR01760.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016032 - viral process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002442368.1
COORDINATES: similar to AA sequence:RefSeq:WP_001642704.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722731.1
COORDINATES: protein motif:HMM:NF016511.2
COORDINATES: similar to AA sequence:RefSeq:WP_001023807.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722728.1
COORDINATES: similar to AA sequence:RefSeq:WP_017722725.1
GO:0044423 - virion component [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.