Staphylococcus nepalensis strain JS11 plasmid pSNJS1101, complete sequence.
Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus.
Complete genome sequence of Staphylococcus nepalensis JS11
Submitted (30-SEP-2016) Fermentation and Functionality, Korea Food Research Institute, 516, Baekhyun-dong, Bundan-gu, Sungnam 463-746, Korea, Republic of
REFSEQ INFORMATION: The reference sequence is identical to\nCP017467.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\nThis genome has a base modification file available.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: FALCON v. 0.3.0\nAssembly Name :: FALCON 0.3.0\nGenome Coverage :: 235x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 07:03:14\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,910\nCDSs (total) :: 2,828\nGenes (coding) :: 2,776\nCDSs (with protein) :: 2,776\nGenes (RNA) :: 82\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 59\nncRNAs :: 4\nPseudo Genes (total) :: 52\nCDSs (without protein) :: 52\nPseudo Genes (ambiguous residues) :: 0 of 52\nPseudo Genes (frameshifted) :: 28 of 52\nPseudo Genes (incomplete) :: 22 of 52\nPseudo Genes (internal stop) :: 21 of 52\nPseudo Genes (multiple problems) :: 14 of 52\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_002319468.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000587616.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_002495832.1
type I toxin-antitoxin system Fst family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_019169032.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002447409.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002447393.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_002495974.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002485059.1
COORDINATES: similar to AA sequence:RefSeq:WP_001632021.1
COORDINATES: similar to AA sequence:RefSeq:WP_002485060.1
COORDINATES: similar to AA sequence:RefSeq:WP_002471380.1
COORDINATES: similar to AA sequence:RefSeq:WP_001105942.1
GO:0004803 - transposase activity [Evidence IEA]
IS6-like element IS257 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_000475805.1
COORDINATES: similar to AA sequence:RefSeq:WP_017465246.1
CadD family cadmium resistance transporter
COORDINATES: similar to AA sequence:RefSeq:WP_020366422.1
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_000493114.1
COORDINATES: similar to AA sequence:RefSeq:WP_010276737.1
COORDINATES: similar to AA sequence:RefSeq:WP_007209103.1
heavy-metal-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010276748.1
DNA starvation/stationary phase protection protein
COORDINATES: similar to AA sequence:RefSeq:WP_003125448.1
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF013753.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015387309.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_000583532.1
COORDINATES: similar to AA sequence:RefSeq:WP_017464805.1
GO:0071949 - FAD binding [Evidence IEA]; GO:0050151 - oleate hydratase activity [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019236158.1
COORDINATES: similar to AA sequence:RefSeq:WP_002508680.1
COORDINATES: similar to AA sequence:RefSeq:WP_011304038.1
COORDINATES: similar to AA sequence:RefSeq:WP_019467786.1
COORDINATES: similar to AA sequence:RefSeq:WP_002508682.1
COORDINATES: similar to AA sequence:RefSeq:WP_002508711.1
COORDINATES: similar to AA sequence:RefSeq:YP_498732.1
COORDINATES: protein motif:HMM:NF014794.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002512570.1
COORDINATES: similar to AA sequence:RefSeq:WP_002440810.1
COORDINATES: similar to AA sequence:RefSeq:WP_002440813.1
COORDINATES: similar to AA sequence:RefSeq:WP_001568503.1
GO:0006260 - DNA replication [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017174779.1
COORDINATES: similar to AA sequence:RefSeq:WP_012657379.1
COORDINATES: similar to AA sequence:RefSeq:WP_002512549.1
COORDINATES: similar to AA sequence:RefSeq:WP_000084139.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003378761.1