Spiroplasma poulsonii strain MSRO_BK plasmid pSMSRO-BK, whole genome shotgun sequence.
Bacteria; Mycoplasmatota; Mollicutes; Entomoplasmatales; Spiroplasmataceae; Spiroplasma.
Blind killing of both male and female Drosophila embryos by a natural variant of the endosymbiotic bacterium Spiroplasma poulsonii
Submitted (10-APR-2019) Global Health Institute - Bruno Lemaitre Research Group, Ecole Polytechnique Federale de Lausanne, EPFL-SV-GHI-UPLEM, Bat SV, Station 19, Lausanne 1015, Switzerland
REFSEQ INFORMATION: The reference sequence is identical to\nCM020867.1.\nBacteria and source DNA available from Lemaitre's EPFL lab.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: HGAP v. 2\nReference-guided Assembly :: GCF_000820525.2\nGenome Coverage :: 122.72x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/13/2023 17:13:12\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,304\nCDSs (total) :: 2,267\nGenes (coding) :: 2,193\nCDSs (with protein) :: 2,193\nGenes (RNA) :: 37\nrRNAs :: 1, 1, 1 (5S, 16S, 23S)\ncomplete rRNAs :: 1, 1, 1 (5S, 16S, 23S)\ntRNAs :: 31\nncRNAs :: 3\nPseudo Genes (total) :: 74\nCDSs (without protein) :: 74\nPseudo Genes (ambiguous residues) :: 0 of 74\nPseudo Genes (frameshifted) :: 35 of 74\nPseudo Genes (incomplete) :: 29 of 74\nPseudo Genes (internal stop) :: 23 of 74\nPseudo Genes (multiple problems) :: 11 of 74\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_076611288.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF025001.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF040179.1
COORDINATES: protein motif:HMM:NF024752.2
COORDINATES: similar to AA sequence:RefSeq:WP_004028771.1
COORDINATES: similar to AA sequence:RefSeq:WP_004028772.1
COORDINATES: similar to AA sequence:RefSeq:WP_012504399.1