Acinetobacter cumulans strain WCHAc060092 plasmid p6_060092, complete sequence.
type: Entry
definition: Acinetobacter cumulans strain WCHAc060092 plasmid p6_060092, complete sequence.
sequence version: NZ_CP035941.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP035941.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08772519
keyword: RefSeq
source: Acinetobacter cumulans
organism: Acinetobacter cumulans
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30808586
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035941.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 10:33:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,514\nCDSs (total) :: 3,392\nGenes (coding) :: 3,314\nCDSs (with protein) :: 3,314\nGenes (RNA) :: 122\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 96\nncRNAs :: 5\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 24 of 78\nPseudo Genes (incomplete) :: 42 of 78\nPseudo Genes (internal stop) :: 23 of 78\nPseudo Genes (multiple problems) :: 11 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 4692
topology: circular
so has quality: SO_0000988
location: 1..4692
location: region:1-4692:1
RO_0002162: 2136182

NZ_CP035941
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08772519
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter cumulans sp. nov., isolated from hospital sewage and capable of acquisition of multiple antibiotic resistance genes
author: Qin, J.
author: Maixnerova, M.
author: Nemec, M.
author: Feng, Y.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Syst Appl Microbiol
volume: 42
issue: 3
pages: 319-325
year: 2019
pubmed: 30808586

30808586
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (13-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (22-MAR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4692:1
position: 4692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-4692:1:source
so part of: sequence
organism: Acinetobacter cumulans
mol type: genomic DNA
strain: WCHAc060092
isolation source: Sewage
type material: type strain of Acinetobacter cumulans
plasmid: p6_060092
country: China: Chengdu, Sichuan
collection date: 2018

2136182
type: Taxonomy
SIO_000068: taxonomy

C9E88_RS17470
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17470
old locus tag: C9E88_016730
so part of: sequence
location: join(4444..4692,1..27)
location: region:1-4692:1
so has part: feature:4444-4692:1:exon
so has part: feature:1-27:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:4444-4692:1:exon

position:4444:1
position: 4444
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-27:1:exon

position:27:1
position: 27
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C9E88_RS17470
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17470
old locus tag: C9E88_016730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007159983.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system prevent-host-death family antitoxin
translation: MQILNFSQARACFKEVMEDVCRDHEPTVITRQRGNPVVVMSLDDFNGMKETIYLLSSKKNANRLLESVARIKAGQTTKRNLIENDCQTEAT
SIO_010081: C9E88_RS17470
subclass of: SO_0000673
so part of: C9E88_RS17470
location: join(4444..4692,1..27)
location: region:1-4692:1
so has part: feature:4444-4692:1:exon
so has part: feature:1-27:1:exon

WP_106986749.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4444-4692:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-27:1:exon

C9E88_RS17445
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17445
old locus tag: C9E88_016705
so part of: sequence
location: 2..310
location: region:2-310:1
so has part: feature:2-310:1:exon
subclass of: SO_0000010

position:2:1
position: 2
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:310:1
position: 310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2-310:1:exon

C9E88_RS17445
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17445
old locus tag: C9E88_016705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_019751770.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MTAKQKQRNKKQAQENVALSWDDHAWDDYQYWLKTSPEIFSKVNDLINESLKTPFSGTGKPEPLKENLSGFISRRITKEHRLVYMYEKGVLHIASCRYHYDD
SIO_010081: C9E88_RS17445
subclass of: SO_0000673
so part of: C9E88_RS17445
location: 2..310
location: region:2-310:1
so has part: feature:2-310:1:exon

WP_106986750.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2-310:1:exon

C9E88_RS17450
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17450
old locus tag: C9E88_016710
so part of: sequence
location: complement(404..592)
location: region:404-592:-1
so has part: feature:404-592:-1:exon
subclass of: SO_0000010

position:404:-1
position: 404
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:592:-1
position: 592
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:404-592:-1:exon

C9E88_RS17450
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17450
old locus tag: C9E88_016710
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010591710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVEKEITKFEKEILLQEKIEQLENELKEFSDLQKKVYSDRLQKSIVGLENRIQRIKKMLYTT
SIO_010081: C9E88_RS17450
subclass of: SO_0000673
so part of: C9E88_RS17450
location: complement(404..592)
location: region:404-592:-1
so has part: feature:404-592:-1:exon

WP_106986751.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:404-592:-1:exon

C9E88_RS17455
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17455
old locus tag: C9E88_016715
so part of: sequence
location: complement(592..1509)
location: region:592-1509:-1
so has part: feature:592-1509:-1:exon
subclass of: SO_0000010

position:1509:-1
position: 1509
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:592-1509:-1:exon

C9E88_RS17455
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17455
old locus tag: C9E88_016715
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004871874.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MLIVKDNALINASYNLELVEQRLILLAIIEARENGKGINANDPLTVHASTYIQTFNVEKHSAYTSLKEACKSLFARQFSYEEINKNGNLTQYTSRWVSKIGYTKNEATVEIIFAPDVVPLITRLEEHFTSYELEQVAQLQSKYATRLYEILIAWRSTGKTPVLTINEFRKQIGVIDSEYKIISNFKLRVLEPSIKQINDLTDIDVTYEQHKKGRTITGFSFNFKQKQQAKKIETNIDPDTADLFKKMTDAQRHMFSHKLSEMPEMSRYSQGTESYQQFAIRIAEMLLQPEKFRELYPLLEKAGFK
SIO_010081: C9E88_RS17455
subclass of: SO_0000673
so part of: C9E88_RS17455
location: complement(592..1509)
location: region:592-1509:-1
so has part: feature:592-1509:-1:exon

WP_106986752.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:592-1509:-1:exon

C9E88_RS17460
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17460
old locus tag: C9E88_016720
so part of: sequence
location: 2193..2702
location: region:2193-2702:1
so has part: feature:2193-2702:1:exon
subclass of: SO_0000010

position:2193:1
position: 2193
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2702:1
position: 2702
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2193-2702:1:exon

C9E88_RS17460
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17460
old locus tag: C9E88_016720
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005200081.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKNQCVVVLTARGKSRILKEGGSQAWRLNAHHAGKCSYVVCVQNRNKSWGQPEAKHHTAFLIGKISSISQSQEEGSQGRWIINISEYADISIPNVWDGNRNPVAYRTLEELNIDLENLQFNKLEQEPNVLEQANKPKEELEKISIPEAKRLLANYFDVPQENISITINM
SIO_010081: C9E88_RS17460
subclass of: SO_0000673
so part of: C9E88_RS17460
location: 2193..2702
location: region:2193-2702:1
so has part: feature:2193-2702:1:exon

WP_106986753.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2193-2702:1:exon

C9E88_RS17465
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
gene: mobV
locus tag: C9E88_RS17465
old locus tag: C9E88_016725
so part of: sequence
location: complement(2888..4021)
location: region:2888-4021:-1
so has part: feature:2888-4021:-1:exon
subclass of: SO_0000010

position:2888:-1
position: 2888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4021:-1
position: 4021
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2888-4021:-1:exon

C9E88_RS17465
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
gene: mobV
locus tag: C9E88_RS17465
old locus tag: C9E88_016725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005080191.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobV family relaxase
translation: MSFAILRIQKLKSFADVGGSLSHNYRNRETLNADDARTHLNEHELDTNEKCMTAIRDRIPEKRRKDAVLCIEHLITASPEWDGWGTEKETAFFEQSKKWLENKYGKNNVVSTTIHRDETTPHLVAYVVPVDEETGRLNAKKYIGGSRHTLSQMQTDFAVEVKDLGLDRGVQGSKAKHTSIQEYYEKLNNYENEPGIEKGLTYEVPEPEFFESKNAYGERVAKAMIDQIFDQIGPRFDNANLLASQSKKLKKELSDARRTLAEVQQRAKPYLDIINKYNNPNLTKQFDEQIFKLEQNFDRQLEHHIFLNEQREQERFNQQRELREQLRIEQEQKKQLAEQERQEKERLAFLRRQELEKQRKNEPKKPDNSNDNDYSPS
SIO_010081: C9E88_RS17465
subclass of: SO_0000673
so part of: C9E88_RS17465
location: complement(2888..4021)
location: region:2888-4021:-1
so has part: feature:2888-4021:-1:exon

WP_106986748.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2888-4021:-1:exon