Acinetobacter cumulans strain WCHAc060092 plasmid p5_060092, complete sequence.
type: Entry
definition: Acinetobacter cumulans strain WCHAc060092 plasmid p5_060092, complete sequence.
sequence version: NZ_CP035940.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP035940.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08772519
keyword: RefSeq
source: Acinetobacter cumulans
organism: Acinetobacter cumulans
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30808586
reference: 2
reference: 3
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035940.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 10:33:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,514\nCDSs (total) :: 3,392\nGenes (coding) :: 3,314\nCDSs (with protein) :: 3,314\nGenes (RNA) :: 122\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 96\nncRNAs :: 5\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 24 of 78\nPseudo Genes (incomplete) :: 42 of 78\nPseudo Genes (internal stop) :: 23 of 78\nPseudo Genes (multiple problems) :: 11 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 8138
topology: circular
so has quality: SO_0000988
location: 1..8138
location: region:1-8138:1
RO_0002162: 2136182

NZ_CP035940
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08772519
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter cumulans sp. nov., isolated from hospital sewage and capable of acquisition of multiple antibiotic resistance genes
author: Qin, J.
author: Maixnerova, M.
author: Nemec, M.
author: Feng, Y.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Syst Appl Microbiol
volume: 42
issue: 3
pages: 319-325
year: 2019
pubmed: 30808586

30808586
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (13-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

3
title: Direct Submission
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (22-MAR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8138:1
position: 8138
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-8138:1:source
so part of: sequence
organism: Acinetobacter cumulans
mol type: genomic DNA
strain: WCHAc060092
isolation source: Sewage
type material: type strain of Acinetobacter cumulans
plasmid: p5_060092
country: China: Chengdu, Sichuan
collection date: 2018

2136182
type: Taxonomy
SIO_000068: taxonomy

C9E88_RS17410
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17410
old locus tag: C9E88_016670
so part of: sequence
location: 214..447
location: region:214-447:1
so has part: feature:214-447:1:exon
subclass of: SO_0000010

position:214:1
position: 214
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:447:1
position: 447
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:214-447:1:exon

C9E88_RS17410
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17410
old locus tag: C9E88_016670
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005074586.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MQESLKKDAEELALRKAWKRAQDIVCHSFDQKTIDACRQSSEERLERLISGESTFEEEDAVLMMQWRALNNRPKNQD
SIO_010081: C9E88_RS17410
subclass of: SO_0000673
so part of: C9E88_RS17410
location: 214..447
location: region:214-447:1
so has part: feature:214-447:1:exon

WP_106986738.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:214-447:1:exon

C9E88_RS17415
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17415
old locus tag: C9E88_016675
so part of: sequence
location: complement(431..1714)
location: region:431-1714:-1
so has part: feature:431-1714:-1:exon
subclass of: SO_0000010

position:431:-1
position: 431
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1714:-1
position: 1714
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:431-1714:-1:exon

C9E88_RS17415
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17415
old locus tag: C9E88_016675
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005175445.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobA/MobL family protein
translation: MFYCNLEHTAKKAIKTRSGKIKDGATAKNRFHYITRTSHFKSYKESVSEHIEFVKSGNLPSFAEGKPAEFWQAADVYERSNGRTCSSLVVALPKELNQAQRIELAEAFITEFADRYRFPFSCAIHNHAGLIAGIEQPHLHLMYSERHMDGIDRSAEQFFKRYNPKDPQKGGAQKLTADVLGMGKAQLQLYRQKTEELINDSLMRYAPMKQVEIRGIQIEVPSRVSCLSHRDYNKKYGTQLQDVPVMNKAVRFACENEPELWAKQQHMIEEIQRIRAENRYEQYRSFYEAELKNRKEIEELSKQAETPRTRQQWYAREKLLFLQQNMLQTLLKDPQTTEPITLIQHDLQRYIDLLNTESFDRLEKLGYLRDLGQNLEGSVIQIAPIDEELAFIQRQVIERVPLKMREKAVTSEKVRNHDQDNDFSPGF
SIO_010081: C9E88_RS17415
subclass of: SO_0000673
so part of: C9E88_RS17415
location: complement(431..1714)
location: region:431-1714:-1
so has part: feature:431-1714:-1:exon

WP_068911102.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:431-1714:-1:exon

C9E88_RS17420
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17420
old locus tag: C9E88_016680
so part of: sequence
location: 1937..2692
location: region:1937-2692:1
so has part: feature:1937-2692:1:exon
subclass of: SO_0000010

position:1937:1
position: 1937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2692:1
position: 2692
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1937-2692:1:exon

C9E88_RS17420
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17420
old locus tag: C9E88_016680
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004787789.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAARGRPAKILTSNDLMTLQQFLKNLPFLKKNQQQALTLLQQANGIFNDKQLNLLKAADRDKNQFLKRQALIEQIKLKDKNQQPLLANETEILALLTQEMDQDNFFRLDRALESYQKIEKAALENRIRLENEHKREILQKSHKELTDAQKKRNAENQLKYALGGAVLAAWNKLNLSTENIDPEKVKNTIVNNQNFFRMVSNTTLYQYIHPRTENYFRSRELFIKVIEGLCEYDDHGTELYIFEADSHLKPQ
SIO_010081: C9E88_RS17420
subclass of: SO_0000673
so part of: C9E88_RS17420
location: 1937..2692
location: region:1937-2692:1
so has part: feature:1937-2692:1:exon

WP_005175443.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1937-2692:1:exon

C9E88_RS17425
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17425
old locus tag: C9E88_016685
so part of: sequence
location: 3344..4243
location: region:3344-4243:1
so has part: feature:3344-4243:1:exon
subclass of: SO_0000010

position:3344:1
position: 3344
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4243:1
position: 4243
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3344-4243:1:exon

C9E88_RS17425
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17425
old locus tag: C9E88_016685
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016650500.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MMSTSKKELVVKSNQVIEASYQLSSTEQRIVLAAISKISRAEDITDDEIYRVTIDDLKKLGVHEKTAYRDLKDGVNRLYDRSINLAIDDESIKMRWIQSIRFLESKSVVGIRFSKEILPFISNLSREFTKYSLSDIAGMSSAYAIRIYELLSQYRSIGKREISIESLRSMLELGKRYPLSADLKRWVIDTAVVQINEHSPLNVSYEQIKTGRKVTHIHFTFKEKSKSIEHKSEQNNFYKLTDSQINMFGNQLSRLHEVSHLAQQGESYDDLAIKIKDMLRDPIKQKQLIPHLKNLGFKA
SIO_010081: C9E88_RS17425
subclass of: SO_0000673
so part of: C9E88_RS17425
location: 3344..4243
location: region:3344-4243:1
so has part: feature:3344-4243:1:exon

WP_004763517.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3344-4243:1:exon

C9E88_RS17430
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17430
old locus tag: C9E88_016690
so part of: sequence
location: 4320..4937
location: region:4320-4937:1
so has part: feature:4320-4937:1:exon
subclass of: SO_0000010

position:4320:1
position: 4320
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4937:1
position: 4937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4320-4937:1:exon

C9E88_RS17430
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17430
old locus tag: C9E88_016690
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017398013.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MKSLSVIELSNLYGITRQAIYKQVNKGNLSKNSDGKIDLSEAIRVFGEPSRNVNSSQTTETRKLSEVHLLEQQVYMLQKQLEQAHEREQFQREELKAKNDQLHVKDEQIEAIQRLLEAPKAYTTSSIDPKLDIATDTRSKSESNYDVLTTQPRETPVEVEIQTQPKDDGLTTPEQVENKRIPVPEHIDQEPEKRGFWSRFFKPYG
SIO_010081: C9E88_RS17430
subclass of: SO_0000673
so part of: C9E88_RS17430
location: 4320..4937
location: region:4320-4937:1
so has part: feature:4320-4937:1:exon

WP_106986739.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4320-4937:1:exon

C9E88_RS17435
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17435
old locus tag: C9E88_016695
so part of: sequence
location: complement(5157..6197)
location: region:5157-6197:-1
so has part: feature:5157-6197:-1:exon
subclass of: SO_0000010

position:5157:-1
position: 5157
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6197:-1
position: 6197
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5157-6197:-1:exon

C9E88_RS17435
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17435
old locus tag: C9E88_016695
inference: COORDINATES: protein motif:HMM:NF019371.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MDLKQVSPYKRRTLTVDEVITKLKSEGLNFSNETLAKSVLQKTTYHRFKFYLHPFLVSLDPKDKPKRFKENIDFKDALNLYLFNKELSNLLLSYISEIEVYLRKSLDQFFIDSGKGYFWYLDDGFIFQPTVAQLRGLKHKDPDYQTPLSKIQSIRKKLKAQFLKSKESHNEHYKNKYKNPEHDIFEQLPPFWHISEFMTLGQICDFIESINIGIFIQRSRENSLDNLAKSFGATKFQYWITWINGLREIRNRCAHHNRVFNANYAAVTLKDIKLQFPSHRPNRLYSILIALDAMYFKINRTHIKADLQELIDKYHVHSHLNSCGFPNNWAEDTYWNDSIVLVDESA
SIO_010081: C9E88_RS17435
subclass of: SO_0000673
so part of: C9E88_RS17435
location: complement(5157..6197)
location: region:5157-6197:-1
so has part: feature:5157-6197:-1:exon

WP_106986736.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5157-6197:-1:exon

C9E88_RS17440
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17440
old locus tag: C9E88_016700
so part of: sequence
location: 6452..7825
location: region:6452-7825:1
so has part: feature:6452-7825:1:exon
subclass of: SO_0000010

position:6452:1
position: 6452
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7825:1
position: 7825
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6452-7825:1:exon

C9E88_RS17440
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17440
old locus tag: C9E88_016700
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNFSDALLDIIISSKKSAISKQSLYREFIKLWLDKKYKNIDISDLRYNSKDYRKKFKRVLKELETSDKLKCIGDEIVGASYFINLTISPLDPLKIISDLYSLGYFSHFSAMKIHKLVDGASDIVYFSTVDRKVWKKHFLDNLEKDKSTRFDNDEKDILDLIPRFPTEENYLSQYLLVFTNKNFGHWEIVNGLKVRKISFLFLDMVRSPQYCGGVETVISVFEKYAPILLEEIIETAHKYGTNIDRARIGFILDELMGLTHPMLEQWKIEMVGLRGGSRKFVAYLPFDPEFSPIWNISLNHDSVKNSFHGVFIKKISETDISNKAYFEIKFAYIHTFIEYAKKKNLNDVTLLIHNLRIDDIRNAHPYEFPYKGDRIYLKNEEELNIFLEKFKMRFERNGFTINPIISSSLGNYKYWQFKITWENTRTSLLETTLNSLEYSWAEEFIKEYLISRGATFK
SIO_010081: C9E88_RS17440
subclass of: SO_0000673
so part of: C9E88_RS17440
location: 6452..7825
location: region:6452-7825:1
so has part: feature:6452-7825:1:exon

WP_106986737.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6452-7825:1:exon