Acinetobacter cumulans strain WCHAc060092 plasmid p4_060092, complete sequence.
type: Entry
definition: Acinetobacter cumulans strain WCHAc060092 plasmid p4_060092, complete sequence.
sequence version: NZ_CP035939.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP035939.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08772519
keyword: RefSeq
source: Acinetobacter cumulans
organism: Acinetobacter cumulans
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30808586
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035939.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 10:33:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,514\nCDSs (total) :: 3,392\nGenes (coding) :: 3,314\nCDSs (with protein) :: 3,314\nGenes (RNA) :: 122\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 96\nncRNAs :: 5\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 24 of 78\nPseudo Genes (incomplete) :: 42 of 78\nPseudo Genes (internal stop) :: 23 of 78\nPseudo Genes (multiple problems) :: 11 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 9699
topology: circular
so has quality: SO_0000988
location: 1..9699
location: region:1-9699:1
RO_0002162: 2136182

NZ_CP035939
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08772519
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter cumulans sp. nov., isolated from hospital sewage and capable of acquisition of multiple antibiotic resistance genes
author: Qin, J.
author: Maixnerova, M.
author: Nemec, M.
author: Feng, Y.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Syst Appl Microbiol
volume: 42
issue: 3
pages: 319-325
year: 2019
pubmed: 30808586

30808586
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (05-SEP-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
comments: Sequence update by submitter

3
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (13-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (22-MAR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9699:1
position: 9699
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-9699:1:source
so part of: sequence
organism: Acinetobacter cumulans
mol type: genomic DNA
strain: WCHAc060092
isolation source: Sewage
type material: type strain of Acinetobacter cumulans
plasmid: p4_060092
country: China: Chengdu, Sichuan
collection date: 2018

2136182
type: Taxonomy
SIO_000068: taxonomy

C9E88_RS17370
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17370
old locus tag: C9E88_016630
so part of: sequence
location: 343..1521
location: region:343-1521:1
so has part: feature:343-1521:1:exon
subclass of: SO_0000010

position:343:1
position: 343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1521:1
position: 1521
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:343-1521:1:exon

C9E88_RS17370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17370
old locus tag: C9E88_016630
inference: COORDINATES: protein motif:HMM:NF024700.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ATP-binding protein
translation: MLSSLQIKNFRSLKNVEIPKLGLINLIVGNNNSGKSSLIESLLILANNADEEILNTLAFSHGEPTLSDREEEEFTSPFQPFESFFPNRQFPREDNVKIVVGELDSSNFLTIEHAFEKEFLIKFEDEEGNILRRLKRDVISKLEIDEMLEDPEQNLQINSILKIENKGSVSRISLEPDRRRATTISRSLDSKLNIPYSYIPTSFLDPDELALDWDKLVLTPYQDYIIEALQIIEPNLENISFIKSVNYRRSRYRSSQRTPIVKLKDHSLPFPLSSMGDGILRILQLVLKLHSARGGILLIDEFDNGLHHSVQEKVWKLVFSLAESLKIQVFATTHSSDCVKAFSKVSKERTDIEGILIQIGKSTRKSNFGEVIANILDENQLATFIKSDFEVR
SIO_010081: C9E88_RS17370
subclass of: SO_0000673
so part of: C9E88_RS17370
location: 343..1521
location: region:343-1521:1
so has part: feature:343-1521:1:exon

WP_162368857.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:343-1521:1:exon

C9E88_RS17375
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17375
old locus tag: C9E88_016635
so part of: sequence
location: 1518..2180
location: region:1518-2180:1
so has part: feature:1518-2180:1:exon
subclass of: SO_0000010

position:1518:1
position: 1518
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2180:1
position: 2180
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1518-2180:1:exon

C9E88_RS17375
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17375
old locus tag: C9E88_016635
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKHLIVEGLGDKVFFEKYCQYYSYNVDVNILTPEDINPQYYTTKNGVISSSLDDLISQITLGIIKNLGIVIDADYIKDKSGIEKTKESLTQKLAPHGYMLVETDEGIIAKHNDGLIDIGIWIMPNNDEDGNIENWIAELISESETPLYEKAKLSVSELAEEGLQKFKPSRVQKAQIATWFAWQKSPGHGLDFFFNAPLIDMNHIKYTNFCTWFRRTFEIQ
SIO_010081: C9E88_RS17375
subclass of: SO_0000673
so part of: C9E88_RS17375
location: 1518..2180
location: region:1518-2180:1
so has part: feature:1518-2180:1:exon

WP_106986765.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1518-2180:1:exon

C9E88_RS17380
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17380
old locus tag: C9E88_016640
so part of: sequence
location: complement(2787..3428)
location: region:2787-3428:-1
so has part: feature:2787-3428:-1:exon
subclass of: SO_0000010

position:2787:-1
position: 2787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3428:-1
position: 3428
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2787-3428:-1:exon

C9E88_RS17380
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17380
old locus tag: C9E88_016640
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016927662.1
GO process: GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
translation: MSKKDIAPQRLTREIVLRTALDMLNEEGIDSITTRKLAQRLGIKSPTLYWHFKNKSLLMEAMAETIINEHHLVSLPIDGMTWQDWLLANSVSFRRALLAYRDGARLHARTSPSQGHFNTIEAQVALLSHAGFSPVEAVALLMTLGRFIVGWVLEEQQEEIRSDPPFEADPTIYPLMLQGVNTLQNMNADDIFENGIRMVIIGAERQLDIKMQT
SIO_010081: C9E88_RS17380
subclass of: SO_0000673
so part of: C9E88_RS17380
location: complement(2787..3428)
location: region:2787-3428:-1
so has part: feature:2787-3428:-1:exon

WP_004787586.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2787-3428:-1:exon

C9E88_RS17385
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17385
old locus tag: C9E88_016645
so part of: sequence
location: 3494..4681
location: region:3494-4681:1
so has part: feature:3494-4681:1:exon
subclass of: SO_0000010

position:3494:1
position: 3494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4681:1
position: 4681
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3494-4681:1:exon

C9E88_RS17385
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17385
old locus tag: C9E88_016645
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004856455.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tetracycline efflux MFS transporter Tet(39)
translation: MKKSLSVILITIFLDAVGIGLIMPILPELLRSLAGAEAGGVHYGALLAVYALMQFIFAPILGALSDRFGRRPVLIISIAGATADYLLMAAAPSLLWLYIGRIFAGITGANMAVATAYVSDITPAHERAKRFGLLGAVFGIGFIAGPVIGGVLGEWNLHAPFFAAAFMNGINLIMTAVLLKESKHSNKMTEKVQEQSILKKLSYLITQPNMAPLLGIFLIITLVSQVPATLWVIYGQDRYGWSIFIAGVSLASYGICHSIAQAFAIAPMVKRFGEKNTLLCGIACDAIGLLLLSIAVEEWVPFALLPLFALGGVAVPALQAMMSRGISDERQGELQGLLSSFNSLGAIIGPVLVTSLYFMTQASAPGMVWALAAILYVITLPLLLKYRLNKYSGVP
SIO_010081: C9E88_RS17385
subclass of: SO_0000673
so part of: C9E88_RS17385
location: 3494..4681
location: region:3494-4681:1
so has part: feature:3494-4681:1:exon

WP_004856455.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3494-4681:1:exon

C9E88_RS17390
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17390
old locus tag: C9E88_016650
so part of: sequence
location: complement(4911..5474)
location: region:4911-5474:-1
so has part: feature:4911-5474:-1:exon
subclass of: SO_0000010

position:4911:-1
position: 4911
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5474:-1
position: 5474
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4911-5474:-1:exon

C9E88_RS17390
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17390
old locus tag: C9E88_016650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_018680126.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid replication DNA-binding protein
translation: MNTTKFSVMDASKAFKKSRTTIYEAIKNGELSRDHDGLIDLSELIRVYGNPIGVQSNTRTEHVQKDVQVRVQSEIENVLKDQISLLKNQLDLANHREKALMQHIEDLTHRIEFKGQLEQPKTEVEEHKVAPPVHSEMTENPKLEPDQKDDGLTTPVETENKRIPVPEHVEQEPEKRGFWSRFFRPYD
SIO_010081: C9E88_RS17390
subclass of: SO_0000673
so part of: C9E88_RS17390
location: complement(4911..5474)
location: region:4911-5474:-1
so has part: feature:4911-5474:-1:exon

WP_227866004.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4911-5474:-1:exon

C9E88_RS17395
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17395
old locus tag: C9E88_016655
so part of: sequence
location: complement(5535..6452)
location: region:5535-6452:-1
so has part: feature:5535-6452:-1:exon
subclass of: SO_0000010

position:5535:-1
position: 5535
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6452:-1
position: 6452
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5535-6452:-1:exon

C9E88_RS17395
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
gene: repM
locus tag: C9E88_RS17395
old locus tag: C9E88_016655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005021644.1
GO function: GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO process: GO:0006270 - DNA replication initiation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein RepM
translation: MRDLVVKDNALINASYNLDLVEQRLILLAIVEARGSGRGINANDPLEVHAESYVNQFNVARQTAYQALKDACKDLFARQFSYQEVNKRGNIENVLSRWVSEIRYIDDEATVKLIFAPAIVPLITRLEEQFTKYELQQISDLSSAYAVRLYELLIAWRSTGQTPVIELAEFRQKIGVLDDEYTRMGNFKDRVLNLAIAQVNEHTDINVKCEQHKKGRNISGFSFTFKQKKVITSKSSTSLELFSKMTDAQRHRFANKLSELPDMNKYSQGTESYPQFAVRIAEMLKDKEKFEELLPHLKKVGFSTK
SIO_010081: C9E88_RS17395
subclass of: SO_0000673
so part of: C9E88_RS17395
location: complement(5535..6452)
location: region:5535-6452:-1
so has part: feature:5535-6452:-1:exon

WP_106986761.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5535-6452:-1:exon

C9E88_RS17400
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17400
old locus tag: C9E88_016660
so part of: sequence
location: 7660..8046
location: region:7660-8046:1
so has part: feature:7660-8046:1:exon
subclass of: SO_0000010

position:7660:1
position: 7660
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8046:1
position: 8046
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7660-8046:1:exon

C9E88_RS17400
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17400
old locus tag: C9E88_016660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005200047.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSTRTVAVRLDNQVAQEYERLAQLKGDKLGTYLRDLLTSNLQMASIERQASRIETLVNDFEKQINYSLDKFTEANYLNKKFFEDFGGVYMMLLSTLMHLKVERDDIRGMQRQGNAYAQRNYFEGKKP
SIO_010081: C9E88_RS17400
subclass of: SO_0000673
so part of: C9E88_RS17400
location: 7660..8046
location: region:7660-8046:1
so has part: feature:7660-8046:1:exon

WP_106986762.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7660-8046:1:exon

C9E88_RS17655
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17655
so part of: sequence
location: 8043..8213
location: region:8043-8213:1
so has part: feature:8043-8213:1:exon
subclass of: SO_0000010

position:8043:1
position: 8043
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8213:1
position: 8213
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8043-8213:1:exon

C9E88_RS17655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005200045.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNIIQLSKPCAFCDSRDNVQLFAGLMLCGNCQENIRITNPGMFEANNQIEQKAQD
SIO_010081: C9E88_RS17655
subclass of: SO_0000673
so part of: C9E88_RS17655
location: 8043..8213
location: region:8043-8213:1
so has part: feature:8043-8213:1:exon

WP_167514225.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8043-8213:1:exon

C9E88_RS17405
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17405
old locus tag: C9E88_016665
so part of: sequence
location: complement(8273..9607)
location: region:8273-9607:-1
so has part: feature:8273-9607:-1:exon
subclass of: SO_0000010

position:8273:-1
position: 8273
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9607:-1
position: 9607
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8273-9607:-1:exon

C9E88_RS17405
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17405
old locus tag: C9E88_016665
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016658832.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ISNCY family transposase
translation: MLITMSDKEIQRLAVLQDVRDHRITQVRAAEILNLSTRQITRLLQKLNQDGVSGMAHASRGQPGHRRHDDLLKSKCLSIIAEHLLGFGPTLAHEKLSSMFDLNIPVETLRRWMTANDLWIPRSKRLKRPYQPRYNRDCFGELIQIDGSYHDWFEGRAAKCCLLVYIDDATGKLLHLRFCEAETTFDYMLSTRAYIEQYGKPLAFYSDKHSVFRVNQKSSQDSQITQFGRILNELNIDIIFANSPQAKGRVERANRTLQDRLIKEMRLEGIGSIAEANIWLPCFIEQFNQKFAKCARNSKNLHRPLSESDLELDDIFTWQEPRKVTKNLTLTYDKCIYMLEPTELNHKLVGLYISFLEYPDGTVAIMHEGRKINYSVFNKLAGLQQNAVVENKRLGSVLAHIQQQHEELEKQNKRSRLKKSMPSRKAQKAVIEQRYLNPVLDSCS
SIO_010081: C9E88_RS17405
subclass of: SO_0000673
so part of: C9E88_RS17405
location: complement(8273..9607)
location: region:8273-9607:-1
so has part: feature:8273-9607:-1:exon

WP_137287915.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8273-9607:-1:exon