Acinetobacter cumulans strain WCHAc060092 plasmid p3_060092, complete sequence.
type: Entry
definition: Acinetobacter cumulans strain WCHAc060092 plasmid p3_060092, complete sequence.
sequence version: NZ_CP035938.1
sequence date: 2023-04-23
sequence: sequence
division: CON
label: NZ_CP035938.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN08772519
keyword: RefSeq
source: Acinetobacter cumulans
organism: Acinetobacter cumulans
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
reference: 1
references: 30808586
reference: 2
reference: 3
reference: 4
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP035938.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 10:33:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,514\nCDSs (total) :: 3,392\nGenes (coding) :: 3,314\nCDSs (with protein) :: 3,314\nGenes (RNA) :: 122\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 96\nncRNAs :: 5\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 24 of 78\nPseudo Genes (incomplete) :: 42 of 78\nPseudo Genes (internal stop) :: 23 of 78\nPseudo Genes (multiple problems) :: 11 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 12247
topology: circular
so has quality: SO_0000988
location: 1..12247
location: region:1-12247:1
RO_0002162: 2136182

NZ_CP035938
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN08772519
type: BioSample
SIO_000068: biosample

1
title: Acinetobacter cumulans sp. nov., isolated from hospital sewage and capable of acquisition of multiple antibiotic resistance genes
author: Qin, J.
author: Maixnerova, M.
author: Nemec, M.
author: Feng, Y.
author: Zhang, X.
author: Nemec, A.
author: Zong, Z.
journal: Syst Appl Microbiol
volume: 42
issue: 3
pages: 319-325
year: 2019
pubmed: 30808586

30808586
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (05-SEP-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
comments: Sequence update by submitter

3
title: Direct Submission
author: Qin, J.
author: Long, H.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (13-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

4
title: Direct Submission
author: Qin, J.
author: Feng, Y.
author: Zong, Z.
journal: Submitted (22-MAR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12247:1
position: 12247
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-12247:1:source
so part of: sequence
organism: Acinetobacter cumulans
mol type: genomic DNA
strain: WCHAc060092
isolation source: Sewage
type material: type strain of Acinetobacter cumulans
plasmid: p3_060092
country: China: Chengdu, Sichuan
collection date: 2018

2136182
type: Taxonomy
SIO_000068: taxonomy

C9E88_RS17340
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17340
old locus tag: C9E88_016600
so part of: sequence
location: join(10876..12247,1..3608)
location: region:1-12247:1
so has part: feature:10876-12247:1:exon
so has part: feature:1-3608:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:10876-12247:1:exon

position:10876:1
position: 10876
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-3608:1:exon

position:3608:1
position: 3608
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

C9E88_RS17340
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17340
old locus tag: C9E88_016600
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005204747.1
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type ISP restriction/modification enzyme
translation: MTALTQLLEKIQDVSVTQRDKGTSFENLMVQYFLNEPKYAELYTEVLSYSDWVEKYGEKLNITDKRDYGIDLVAVTIEGDFHPIQCKNYNTTKIQKKDIDSFLGGSGKSYFAYRYIVASTDDWSDNAKSSLVDAQPPVATISLLDLEGSLIDWSQFDFDPNVKPVFRDKKQLRQHQRPALNAVKHALTTADRGKLIMACGTGKTFTSLRIAEELAGRGKNVLFLVPSLALLSQTLDEWTQDTMIGIRSFAVCSDSDVGKKKDDDNIVVGISDLKFPATTNPQSLVRAFKARDLFKPNEANEDMNVVFSTYHSIDVIAEAQKAGFPEFDLIICDEAHRTTGATFEGDDESKFVRIHNNDYVQGKKRLYMTATPRIYGDTAKETEGVTLCSMDDKSLYGEDLYVITFSQAVKMGILCDYKVIVLAVEESHINRQLQSLLKDENNSLKVDDAAKIVGCWKALAKQGLYNPDGTVAKPMERAVAFCQVIEKEYKGKKHKVSSKQITEMFSAVVEAYQQAEMDHLYRTEEDPYIDLSLKLNCQVKHVDGGMNATEKKEKITWLKEQAPENTCRILSNVRCLSEGVDVPSLDAVLFLTPRNSQVDVVQSVGRVMRKAPNKELGYVILPVVIPAGVEPEQALNNNEAYRVVWQVLNALRAHDDRFDAMINKLEFNGKDVSRMEVVAIADKVVKKAKKVKAQATDGNETSVQSGLSEGKKRKAKAQARGGSSIGQAASPTPQQTEMEFEVGEIERALYAKIVKKCGNRHHWEDWASDVAKIAKTHIDRIQAILENPTNTNEIAAFNEFAHELRDDLNNSVSDAEIIEMLAQHLITKPVFDALFKDHSFAEHNPMSLAMQKVLNALNEHHLEKEADTLNSFYESVRMRAEGINTAEGKQSIILTLYDSFFKNAFPRMTEKLGIVYTPVEVVDFIIHSVNDVLKSEFGKTFADDNVHVLDPFTGTGTFINRLLQSGLIPADRLTYKYKNEIHANEIVLLAYYIASINIETVYHDQMKTVNPDLEYAPFEGICLTDTFEMYEKDDLVSKVLVDNSARRKRQKNLDITVIVGNPPYSAGQESANDNNANVAYPHLDERIRTTYAEHTTSTNKNSLYDSYIRAIRWASDRIQDCGVIGFVTNGGYIDSNSADGLRKCLADEFSSLYFFHLRGNARTSGEQRRKEKDNVFGQGTRTPILIAVLVKNPNAKQYGQIYFHDIGDYLSREEKLEKIADLVSINGITEVDGWTKITPDTHNDWLNQRDDSFNEFIEIGNKKDKNSISLFDSYSKGLMTGRDAWCVNSSSLKIISNLNKMITVFNNHVSENKNSNDNLTNDPSKISWNRSLLQTLDKGLSLNIDKINLRKYLYRPFTKTTVYFEKNLNEMTYRIPSMYPLNHNNLSIIINGIGVNKAFSALLTNAIPDVQNHANCQCFPLYLYEETSTENKADDLFSHAETNTADGQYTRKDAISDEGLKHFQDAYPTETISKEDIFYYVYGLLHSEDYRTRYADNLTKELPRIPCVKKSDDFWAFSKAGRDLAHWHLNYETVEPYKAKLDLGGKSLKQLEDKDFYVTKMKFPKKDQKDTVVYNNSITIREIPLEAYDYVVNGKSALEWVMERQGVSTHKDSGIVNDANDWAIETMGDAKYPLNLFLRVITVSLETMKIVKTLPKLDI
SIO_010081: C9E88_RS17340
subclass of: SO_0000673
so part of: C9E88_RS17340
location: join(10876..12247,1..3608)
location: region:1-12247:1
so has part: feature:10876-12247:1:exon
so has part: feature:1-3608:1:exon

WP_106986721.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10876-12247:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-3608:1:exon

C9E88_RS17345
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17345
old locus tag: C9E88_016605
so part of: sequence
location: 3780..4172
location: region:3780-4172:1
so has part: feature:3780-4172:1:exon
subclass of: SO_0000010

position:3780:1
position: 3780
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4172:1
position: 4172
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3780-4172:1:exon

C9E88_RS17345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17345
old locus tag: C9E88_016605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000147423.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTNRFKAARQNTEFTHNDVNSDVKENIEQSSKINIVTRNQSVITIEKNTLPVAKRVRTKHGRNLTTPLFVEELTAIEEAVKKLGQEQDISMATFIRQTILDQCKKVLGKEGFNEIMANQLNSVKPKKEKE
SIO_010081: C9E88_RS17345
subclass of: SO_0000673
so part of: C9E88_RS17345
location: 3780..4172
location: region:3780-4172:1
so has part: feature:3780-4172:1:exon

WP_171501797.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3780-4172:1:exon

C9E88_RS17350
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17350
old locus tag: C9E88_016610
so part of: sequence
location: 4240..4848
location: region:4240-4848:1
so has part: feature:4240-4848:1:exon
subclass of: SO_0000010

position:4240:1
position: 4240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4848:1
position: 4848
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4240-4848:1:exon

C9E88_RS17350
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17350
old locus tag: C9E88_016610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000807825.1
GO function: GO:0005524 - ATP binding [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAKIICVANRKGGVGKTTLATNLAVALNNKGKSILIDADEQQSASKWAKQRNDIECISVHSELLTKLEEIDSKYDYILIDVAGRDSTIFREALLVANTLIVPTQPSLLDLDVLEYMQDKIATARKMNSDLDAYVLINRASPRSNELPDAIDFIKDFDQFKLLKTVLFERKQFRDAIIESKSVTEMNSSKAKDELNKLIIEIL
SIO_010081: C9E88_RS17350
subclass of: SO_0000673
so part of: C9E88_RS17350
location: 4240..4848
location: region:4240-4848:1
so has part: feature:4240-4848:1:exon

WP_106986724.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4240-4848:1:exon

C9E88_RS17355
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17355
old locus tag: C9E88_016615
so part of: sequence
location: 5645..5917
location: region:5645-5917:1
so has part: feature:5645-5917:1:exon
subclass of: SO_0000010

position:5645:1
position: 5645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5917:1
position: 5917
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5645-5917:1:exon

C9E88_RS17355
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17355
old locus tag: C9E88_016615
inference: COORDINATES: protein motif:HMM:NF013855.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIEKVQQLPFLTERQTSVLRFLYDYMSQHRYMPTRREVAQFLKLKSDNASAYLSPLEKKGYLVRSEHTRRNLELTDLAYEKLNLTQNETL
SIO_010081: C9E88_RS17355
subclass of: SO_0000673
so part of: C9E88_RS17355
location: 5645..5917
location: region:5645-5917:1
so has part: feature:5645-5917:1:exon

WP_162368856.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5645-5917:1:exon

C9E88_RS17360
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17360
old locus tag: C9E88_016620
so part of: sequence
location: 6049..8076
location: region:6049-8076:1
so has part: feature:6049-8076:1:exon
subclass of: SO_0000010

position:6049:1
position: 6049
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8076:1
position: 8076
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6049-8076:1:exon

C9E88_RS17360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17360
old locus tag: C9E88_016620
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRQLTEKQIINQNSLFELHQNVCFHADRVLSNQSEKSILHLKDFSQRTCRLLCQFISDDANIFDILNDPEIITILDSFYKELANNKSITTVNSSRRAMNFILYEVWGYYKTKHWLPLHSKKFDEKLNVLDRFLLCIEAAKEIISLSYPNISTDRAYKYFMAQINDICGGNYVTSYSLRMNFYRKKMPIWVNDNIDIKPDFYLGKEHKPICIAKAIEKLSGAPKGYLIDLINISEIKKEKLSRIGVRADSFDILLINSTFRKELKLYAEYKTSAIINKKRNEKWTVRLQNNKTKQKYKTIMNATLIKELCVLNPEQSIPSFEVLIGYIIRISRYALDLKLLKADELSLYTVTQAEISEKILNHLINKDQFIPSHMYNYLSSFAALWFSNSPFFVEFADEVFSTRYNLSKDQLLQVSKDNQDRFKKLQSQVKSYVKQSKNSHKLLNRNVLELENPSMYILDILKNAKLDLNSVLDSKELSSNSATLIRNICIVSCLLCCPLRVRNWVNMKIGYHQDDECIYFDDNKKSYVLSIPKSQFKNFKQKNIPDVFSLVILPQFTQAITDYINEARPLLLKGEQSDYFLVSQHSSKIDTGSLNKMIKQFTYQYDDKNLRIGGINIHAFRAIVATTFLKKFKGSFAYAAFLLLDSEETIRESYGHLSPDDAFAEWGKIISVEAA
SIO_010081: C9E88_RS17360
subclass of: SO_0000673
so part of: C9E88_RS17360
location: 6049..8076
location: region:6049-8076:1
so has part: feature:6049-8076:1:exon

WP_137287952.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6049-8076:1:exon

C9E88_RS17365
type: Gene
subclass of: SO_0000704
RO_0002162: 2136182
locus tag: C9E88_RS17365
old locus tag: C9E88_016625
so part of: sequence
location: 8076..10766
location: region:8076-10766:1
so has part: feature:8076-10766:1:exon
subclass of: SO_0000010

position:10766:1
position: 10766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8076-10766:1:exon

C9E88_RS17365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 2136182
locus tag: C9E88_RS17365
old locus tag: C9E88_016625
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNSYKYDFEDINNRLIQSVDTICSHFWSNGKKQGIYWVVGDVYNTKSSKDGSFKITLSGAKKGLFHDFNGDKHYSPLDALAALYSVDVLEAAKIASSFLGLSVEERKNLKFVKPQLKVKEPDSKNTILPKKLNVSWSKKLEQRLAKNEVALAYLYGRSLTAETIKEFRLGLSTPYKNKDGVVSADALVYPIRCCNGDFLSSNGYYNISDLTQNPIDKNGWMKGSAQPYFTHAYTSQDAIFICEGVKDAWVIWQNLKDFNLLDKILVCTSTHGSAIPDAMKNESFWTRFETIYLAHDHDSAGDVMAEKLMPFIGRDAFRLKVPPHFAKPKYSVDGVLKDESEWGADWTDFFKANPGKTEFINHIQNAPLFSIRLEKASSNEELSVGRFNVAPVDINGAYLNGFMYYPIQTLVRKQEEDEYGSSFVSERYETVVVRSDKTVHKAIKSPAPKGTPDSERVIRLTDGTLIRSEPKANDYGTWKWNHIDAYINGKLKIRDIKSIFDDIYNFLKKSVWLPVKEDYTILSLTVLATYVQNIFESVPLIFLNGQAGTGKSQTGIIMSKLSCNGSVIGQVSAATAARHIDAARGFVVFDDLEGVASKGGKESQFSDLVQALKVSYNKHTAEKVWTDVKTMKTERLNFFGIKLLSNTSGADDILSTRMLRIQTLYMPDSEKGTIKKMNASDFTRIENLRQELHAWAFENCQKIEKIAQTHDEKTGRFDEIALPLRVIGSMISEECCKELEIALSKQRTVVFESNEPVEVLKEAVKNIIKDGFHRFTVTQLIMELRTLLDDNFGANMTNQIPEWQRPEWIGRQLRTLGLLDNVDLGRTTFYGKRLKVMQFNDYAINQVIEELGATIDHIKEPFDFCKGCSSCPYANSHCDFRSMRLQEEQKSKGKYS
SIO_010081: C9E88_RS17365
subclass of: SO_0000673
so part of: C9E88_RS17365
location: 8076..10766
location: region:8076-10766:1
so has part: feature:8076-10766:1:exon

WP_106986720.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8076-10766:1:exon