Acinetobacter cumulans strain WCHAc060092 plasmid pNDM1_060092, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Acinetobacter.
Acinetobacter cumulans sp. nov., isolated from hospital sewage and capable of acquisition of multiple antibiotic resistance genes
Submitted (13-FEB-2019) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
Submitted (22-MAR-2018) Center of Infectious Diseases, West China Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan 610041, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP035935.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Unicycler v. 0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 200.0x\nSequencing Technology :: Illumina HiSeq; Oxford Nanopore MiniION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/23/2023 10:33:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,514\nCDSs (total) :: 3,392\nGenes (coding) :: 3,314\nCDSs (with protein) :: 3,314\nGenes (RNA) :: 122\nrRNAs :: 7, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 7, 7 (5S, 16S, 23S)\ntRNAs :: 96\nncRNAs :: 5\nPseudo Genes (total) :: 78\nCDSs (without protein) :: 78\nPseudo Genes (ambiguous residues) :: 0 of 78\nPseudo Genes (frameshifted) :: 24 of 78\nPseudo Genes (incomplete) :: 42 of 78\nPseudo Genes (internal stop) :: 23 of 78\nPseudo Genes (multiple problems) :: 11 of 78\nCRISPR Arrays :: 1\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005108919.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017480461.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108921.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108922.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060710.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005108924.1
COORDINATES: similar to AA sequence:RefSeq:WP_005404871.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108926.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060713.1
GO:0043684 - type IV secretion system complex [Evidence IEA]
GO:0044097 - secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005108928.1
COORDINATES: similar to AA sequence:RefSeq:WP_005108929.1
TrbG/VirB9 family P-type conjugative transfer protein
COORDINATES: protein motif:HMM:NF016238.2
COORDINATES: similar to AA sequence:RefSeq:WP_032072965.1
GO:0004803 - transposase activity [Evidence IEA]
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISAba14 family transposase
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005108931.1
GO:0030255 - protein secretion by the type IV secretion system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005000439.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000442.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000443.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000446.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000449.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000195.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000193.1
COORDINATES: similar to AA sequence:RefSeq:WP_005000189.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480466.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060716.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060717.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999734.1
COORDINATES: similar to AA sequence:RefSeq:WP_017480467.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060720.1
COORDINATES: similar to AA sequence:RefSeq:WP_005254881.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993231.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993232.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993319.1
COORDINATES: similar to AA sequence:RefSeq:WP_000422636.1
APH(3')-VI family aminoglycoside O-phosphotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_076611607.1
COORDINATES: similar to AA sequence:RefSeq:WP_032492661.1
subclass B1 metallo-beta-lactamase NDM-1
COORDINATES: similar to AA sequence:RefSeq:WP_004201167.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201168.1
GO:0004640 - phosphoribosylanthranilate isomerase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006399920.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
twin-arginine translocation (TAT) pathway signal sequence domain protein
COORDINATES: protein motif:HMM:NF022853.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
protein-disulfide reductase DsbD family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004201171.1
GO:0010038 - response to metal ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013534102.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005411226.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001137772.1
COORDINATES: similar to AA sequence:RefSeq:WP_004761801.1
COORDINATES: similar to AA sequence:RefSeq:WP_004993315.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004993314.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060705.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004993309.1
COORDINATES: similar to AA sequence:RefSeq:WP_015060707.1
COORDINATES: similar to AA sequence:RefSeq:WP_004999358.1